FvH4_3g28030

Reactive mitochondrial oxygen species modulator 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017205
Physical Location & Seq
Forward (+)
21033335 .. 21036133
2799 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28030.t1

Sequence Viewer

Length: 225 bp
ATGGCCAAGGACAGCTGTTTGAGTCGCATGGCCGCCGGCGCGGCTGTCGGCGGCGCTGTTGGTTGTGCTGTTGGTGTGATGTATGGGTCGTTTGAGGCTATACGGTGTAAGGTGCCAGGGGTGGAGAAGATCAGGTTTGTTGGACAAAGGACGATTGGGACTGCAGCTGTTTTTGGTCTTTTCTTAAGTGCTGGGGCATTAATACATTGTGGAAAGTCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Romo1

Protein Analysis

75

Amino Acids

7.49

Weight (kDa)

9.38

Isoelectric Point (pI)

20.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Romo1 PF10247 5 - 70 6.6e-19 Reactive mitochondrial oxygen species modulator 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07910
fragaria_vesca FvH4_3g28030
malus_domestica MD00G1126200.v1.1 MD00G1154200.v1.1
prunus_persica Prupe.4G268400_v2.0.a1
pyrus_communis pycom03g12330 pycom11g16150
rosa_chinensis RchiOBHm_Chr5g0050711
rosa_multiflora Rmu_sc0002117.1_g000026
rosa_roxburghii Rroxscaffold_1G00030070
rosa_rugosa Rorug05G0263200
rosa_samantha Rh5BG344500
rosa_wichuraiana Rw5G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 112
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 33, 41, 51
AcoI YGGCCR 2 cut(s) 3, 30
AflII CTTAAG 1 cut(s) 184
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 15, 167
AluI AGCT 2 cut(s) 15, 167
AoxI GGCC 2 cut(s) 3, 30
ApeKI GCWGC 1 cut(s) 164
AseI ATTAAT 1 cut(s) 200
AspLEI GCGC 2 cut(s) 41, 56
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 57
BfrI CTTAAG 1 cut(s) 184
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 4 cut(s) 33, 42, 52, 165
BlsI GCNGC 4 cut(s) 34, 43, 53, 166
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 6, 116
Bse118I RCCGGY 1 cut(s) 35
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 6, 116
BseXI GCAGC 1 cut(s) 176
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 5, 32
BshNI GGYRCC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 2 cut(s) 5, 32
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 3 cut(s) 33, 41, 51
BspANI GGCC 2 cut(s) 5, 32
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 112
BspTI CTTAAG 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 6, 116
BssMI GATC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 37
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 41, 56
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 38, 41
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 5, 32
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 2 cut(s) 41, 56
Cfr10I RCCGGY 1 cut(s) 35
CviAII CATG 1 cut(s) 28
CviJI RGCY 6 cut(s) 5, 15, 32, 44, 98, 167
CviKI_1 RGCY 6 cut(s) 5, 15, 32, 44, 98, 167
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
EaeI YGGCCR 2 cut(s) 3, 30
Eco130I CCWWGG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 31
FaiI YATR 4 cut(s) 29, 84, 101, 220
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 33, 42, 52, 165
Fsp4HI GCNGC 4 cut(s) 33, 42, 52, 165
GlaI GCGC 2 cut(s) 40, 55
GluI GCNGC 4 cut(s) 33, 42, 52, 165
GsaI CCCAGC 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 2 cut(s) 5, 32
HapII CCGG 1 cut(s) 36
HhaI GCGC 2 cut(s) 41, 56
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 2 cut(s) 39, 54
HinP1I GCGC 2 cut(s) 39, 54
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 41
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 2 cut(s) 39, 54
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 5 cut(s) 49, 102, 118, 129, 177
Lsp1109I GCAGC 1 cut(s) 176
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 1 cut(s) 139
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 1 cut(s) 88
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 35
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 185, 200, 223
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 15, 167
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 38, 41
NaeI GCCGGC 1 cut(s) 37
NdeII GATC 1 cut(s) 129
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 114
PdiI GCCGGC 1 cut(s) 37
PkrI GCNGC 4 cut(s) 34, 43, 53, 166
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 114
PstI CTGCAG 1 cut(s) 166
PvuII CAGCTG 2 cut(s) 15, 167
SaqAI TTAA 3 cut(s) 185, 200, 223
SatI GCNGC 4 cut(s) 33, 42, 52, 165
Sau3AI GATC 1 cut(s) 129
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 117
SetI ASST 4 cut(s) 17, 114, 137, 169
SfcI CTRYAG 1 cut(s) 162
SgeI CNNG 8 cut(s) 19, 40, 48, 52, 128, 129, 145, 204
SgrAI CRCCGGYG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
SsiI CCGC 3 cut(s) 33, 41, 51
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 105
TauI GCSGC 3 cut(s) 35, 44, 54
Tru1I TTAA 3 cut(s) 185, 200, 223
Tru9I TTAA 3 cut(s) 185, 200, 223
TseI GCWGC 1 cut(s) 164
Vha464I CTTAAG 1 cut(s) 184
VspI ATTAAT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.