MD00G1126200.v1.1

Reactive oxygen species modulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0017205
Physical Location & Seq
Reverse (-)
26859734 .. 26863069
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1126200.v1.1.491

Sequence Viewer

Length: 228 bp
ATGGCTAAGGAAAACAGCTGCTTGACTCGCGTTGCCACCGGCGCTGTAATTGGCGGAGCTATCGGCGGTGCCGTCGGTTCAGTGTATGGGACGTACGAAGCTTTAAGGTTTAAGGTGCCAGGATTTCTGAAGATCAGGCACATTGGACAAAGAACAGTGTCGAGTGCGGCTCTATTCGGTCTTTTCTTAGGTGCTGGAAGCTTGATACATTGTGGGAAGTCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Romo1

Protein Analysis

76

Amino Acids

7.7

Weight (kDa)

9.92

Isoelectric Point (pI)

21.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Romo1 PF10247 6 - 71 6.3e-21 Reactive mitochondrial oxygen species modulator 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07910
fragaria_vesca FvH4_3g28030
malus_domestica MD00G1126200.v1.1 MD00G1154200.v1.1
prunus_persica Prupe.4G268400_v2.0.a1
pyrus_communis pycom03g12330 pycom11g16150
rosa_chinensis RchiOBHm_Chr5g0050711
rosa_multiflora Rmu_sc0002117.1_g000026
rosa_roxburghii Rroxscaffold_1G00030070
rosa_rugosa Rorug05G0263200
rosa_samantha Rh5BG344500
rosa_wichuraiana Rw5G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 68, 115
AccII CGCG 1 cut(s) 30
AciI CCGC 3 cut(s) 54, 66, 167
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 4 cut(s) 18, 59, 101, 201
AluI AGCT 4 cut(s) 18, 59, 101, 201
ApeKI GCWGC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 44
BanI GGYRCC 2 cut(s) 68, 115
BbvI GCAGC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 45
BisI GCNGC 2 cut(s) 19, 168
BlsI GCNGC 2 cut(s) 20, 169
Bme1390I CCNGG 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 70, 117
BmrFI CCNGG 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 154, 186
Bpu10I CCTNAGC 1 cut(s) 6
Bse118I RCCGGY 1 cut(s) 38
BseBI CCWGG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 30
BshNI GGYRCC 2 cut(s) 68, 115
BsiSI CCGG 1 cut(s) 39
BsiWI CGTACG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 3 cut(s) 54, 66, 167
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 70, 117
BspT107I GGYRCC 2 cut(s) 68, 115
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssMI GATC 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 157
BstDEI CTNAG 2 cut(s) 6, 187
BstFNI CGCG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 27, 41
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 87, 162
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 38
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 6 cut(s) 5, 18, 59, 101, 170, 201
CviKI_1 RGCY 6 cut(s) 5, 18, 59, 101, 170, 201
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 6, 187
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
EciI GGCGGA 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 118
FaiI YATR 2 cut(s) 87, 223
FaqI GGGAC 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 19, 168
Fsp4HI GCNGC 2 cut(s) 19, 168
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 19, 168
HaeII RGCGCY 1 cut(s) 45
HapII CCGG 1 cut(s) 39
HhaI GCGC 1 cut(s) 44
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 2 cut(s) 99, 199
HinfI GANTC 1 cut(s) 25
HpaII CCGG 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 129
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 41
HpyF3I CTNAG 2 cut(s) 6, 187
HpySE526I ACGT 1 cut(s) 92
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 5 cut(s) 52, 105, 121, 132, 180
Lsp1109I GCAGC 1 cut(s) 5
MaeII ACGT 1 cut(s) 92
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 1 cut(s) 142
MluCI AATT 1 cut(s) 48
MlyI GAGTC 1 cut(s) 19
MseI TTAA 2 cut(s) 104, 111
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 27, 41
NdeII GATC 1 cut(s) 132
NlaIV GGNNCC 2 cut(s) 70, 117
PcsI WCGNNNNNNNCGW 1 cut(s) 69
Pfl23II CGTACG 1 cut(s) 93
PkrI GCNGC 2 cut(s) 20, 169
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspLI CGTACG 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 70, 117
PvuII CAGCTG 1 cut(s) 18
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 104, 111
SatI GCNGC 2 cut(s) 19, 168
Sau3AI GATC 1 cut(s) 132
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 120
SetI ASST 8 cut(s) 20, 61, 95, 103, 110, 117, 193, 203
SgrAI CRCCGGYG 1 cut(s) 38
Sse9I AATT 1 cut(s) 48
SsiI CCGC 3 cut(s) 54, 66, 167
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 161
TaqII GACCGA 1 cut(s) 167
TasI AATT 1 cut(s) 48
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 104, 111
Tru9I TTAA 2 cut(s) 104, 111
TscAI CASTG 2 cut(s) 87, 162
TseI GCWGC 1 cut(s) 18
TspRI CASTG 2 cut(s) 87, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.