AT3G08980

signal peptidase I family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
2740745 .. 2742756
2012 bp
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UTR
Exon/CDS
Intron
AT3G08980.5

Sequence Viewer

Length: 465 bp
ATGGGAATCCAGAATATTTTATGGCAAGTGGCGAAGAAATCATTCACTGGAAGTATTATAGGGCTTACCATTTCAGATAGATGTTGTAGCGTTGTTCCAGTGAGAGGAGATTCCATGTCTCCCACATTTAATCCCCAGCGGAATTCTTATTTAGATGATTATGTACTTGTGGACAAATTTTGCCTTAAGGATTACAAGTTTGCGCGTGGTGATGTTGTAGTGTTCAGCTCTCCGACACATTTCGGAGATAGATACATAAAGAGGATAGTCGGGATGCCTGGTGAATGGATAAGTAGTTCTCGGGATGTGATCAGAGTCCCAGAAGGTCATTGTTGGGTAGAAGGAGATAACAAAACTTCCAGCTTAGACTCAAGATCCTTTGGCCCTATTCCTTTGGGTTTAATTCAAGGAAGGGTCACTCGTGTCATGTGGCCTCCTCAAAGAATAAGCAAGATCGGTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

17.33

Weight (kDa)

9.51

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 9 - 105 1.5e-14 Signal peptidase, peptidase S26
Peptidase_S26 PF10502 105 - 131 4.4e-06 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011438)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 205
AciI CCGC 1 cut(s) 139
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 2 cut(s) 142, 176
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 104
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 1 cut(s) 277
AloI GAACNNNNNNTCC 2 cut(s) 280, 312
AluBI AGCT 2 cut(s) 228, 363
AluI AGCT 2 cut(s) 228, 363
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 369
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 2 cut(s) 382, 431
ApoI RAATTY 2 cut(s) 142, 176
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 221, 293
AvaI CYCGRG 1 cut(s) 300
BauI CACGAG 1 cut(s) 420
BciT130I CCWGG 1 cut(s) 279
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 383
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 52, 98
BseBI CCWGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 279, 310
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 2 cut(s) 52, 98
BseRI GAGGAG 2 cut(s) 120, 426
BseYI CCCAGC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 205
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 2 cut(s) 384, 433
BsiEI CGRYCG 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 384, 433
BsoBI CYCGRG 1 cut(s) 300
Bsp143I GATC 3 cut(s) 309, 374, 453
BspACI CCGC 1 cut(s) 139
BspANI GGCC 2 cut(s) 384, 433
BspFNI CGCG 1 cut(s) 205
BspPI GGATC 1 cut(s) 369
BspTI CTTAAG 1 cut(s) 185
BsrI ACTGG 2 cut(s) 52, 98
BssMI GATC 3 cut(s) 309, 374, 453
BssSI CACGAG 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 279
BstAFI CTTAAG 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 279, 310
BstFNI CGCG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 3 cut(s) 312, 377, 456
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 3 cut(s) 309, 374, 453
BstMCI CGRYCG 1 cut(s) 460
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstUI CGCG 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 2 cut(s) 384, 433
BtsCI GGATG 2 cut(s) 279, 310
BtsIMutI CAGTG 2 cut(s) 45, 105
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 115, 427
CviJI RGCY 5 cut(s) 64, 228, 363, 384, 433
CviKI_1 RGCY 5 cut(s) 64, 228, 363, 384, 433
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 364
DpnI GATC 3 cut(s) 311, 376, 455
DpnII GATC 3 cut(s) 309, 374, 453
Eco88I CYCGRG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 277
FaeI CATG 2 cut(s) 118, 430
FaiI YATR 6 cut(s) 22, 59, 116, 162, 257, 428
FaqI GGGAC 1 cut(s) 302
FatI CATG 2 cut(s) 114, 426
FbaI TGATCA 1 cut(s) 309
FokI GGATG 2 cut(s) 286, 317
GlaI GCGC 1 cut(s) 204
GsaI CCCAGC 1 cut(s) 139
HaeIII GGCC 2 cut(s) 384, 433
HhaI GCGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 118, 430
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 4 cut(s) 6, 110, 315, 368
HphI GGTGA 2 cut(s) 221, 293
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 4 cut(s) 76, 234, 245, 314
Hpy188III TCNNGA 4 cut(s) 10, 271, 302, 372
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 3 cut(s) 317, 335, 405
HpyF3I CTNAG 1 cut(s) 364
Hsp92II CATG 2 cut(s) 118, 430
HspAI GCGC 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 3 cut(s) 309, 374, 453
LpnPI CCDG 8 cut(s) 23, 33, 111, 149, 264, 291, 333, 373
LweI GCATC 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 415
MalI GATC 3 cut(s) 311, 376, 455
MboI GATC 3 cut(s) 309, 374, 453
MboII GAAGA 1 cut(s) 46
MflI RGATCY 1 cut(s) 374
MluCI AATT 3 cut(s) 142, 176, 402
MlyI GAGTC 2 cut(s) 324, 362
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 4 cut(s) 98, 255, 444, 447
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 3 cut(s) 129, 186, 401
MspA1I CMGCKG 1 cut(s) 139
MspCI CTTAAG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 205
NdeII GATC 3 cut(s) 309, 374, 453
NlaIII CATG 2 cut(s) 118, 430
NmuCI GTSAC 1 cut(s) 415
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 6, 110
PleI GAGTC 2 cut(s) 323, 362
PpsI GAGTC 2 cut(s) 323, 362
Psp6I CCWGG 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 1 cut(s) 277
PspPI GGNCC 1 cut(s) 383
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 129, 186, 401
Sau3AI GATC 3 cut(s) 309, 374, 453
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 2 cut(s) 324, 362
ScrFI CCNGG 1 cut(s) 279
SetI ASST 3 cut(s) 230, 328, 365
SfaNI GCATC 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 185, 370
SmoI CTYRAG 2 cut(s) 185, 370
Sse9I AATT 3 cut(s) 142, 176, 402
SsiI CCGC 1 cut(s) 139
SspI AATATT 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 277
TaqI TCGA 1 cut(s) 460
TaqII GACCGA 1 cut(s) 446
TasI AATT 3 cut(s) 142, 176, 402
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 2 cut(s) 6, 110
Tru1I TTAA 3 cut(s) 129, 186, 401
Tru9I TTAA 3 cut(s) 129, 186, 401
TscAI CASTG 2 cut(s) 52, 105
TseFI GTSAC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 415
TspRI CASTG 2 cut(s) 52, 105
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 2 cut(s) 142, 176
XmnI GAANNNNTTC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.