Prupe.6G276100_v2.0.a1

Mitochondrial inner membrane protease subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011438
Physical Location & Seq
Reverse (-)
25993291 .. 25996038
2748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G276100.1

Sequence Viewer

Length: 513 bp
ATGGGAACTCGAAGTGCGTTGTGGAGTTTTGCCAACAAGTTTTTCACATGTGGGGTCATAGGTGTCTATGTTTCAGATCGATTTGTGGGTGTTGCTCCGGTGCGCGGTTCCTCTATGTCACCTACGTTAAATCCTGGAACTACTTCTTTAATGGGCTTGGCAATTGATGACTATGTTTTGGTGGAGAAACGGTGTCTTCAAAACTACAAGTTTTCACATGGTGACGTGGTTGTTTTCAGTTCCCCAAGCAATCACAAGGAGAGGCACATAAAGAGAATAACTGCATTACCTGGTGAGTGGATTGGAACTCGTCATTCCTATGATGTGCTGAAAATTCCAGAAGGACATTGTTGGGTTGAGGGAGACAACTCATCTTCTAGCTTGGATTCAAGATCGTTTGGTCCAATTCCTCTAGGTCTAGTTCAAGGAAGGGTTACCCACATTGCGTGGCCTCCTCAGAGAATTGGTGCTGTTGAGAAAAGAACACCCCAAGACACAATTTCCTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24 Peptidase_S26

Protein Analysis

171

Amino Acids

18.65

Weight (kDa)

9.12

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08980 AT3G08980 AT3G08980 AT3G08980 AT3G08980
fragaria_vesca FvH4_6g11550 FvH4_6g28771
malus_domestica MD04G1151200.v1.1 MD12G1165200.v1.1
prunus_persica Prupe.6G276100_v2.0.a1
pyrus_communis pycom04g13710 pycom12g15790
rosa_chinensis RchiOBHm_Chr3g0463251
rosa_laevigata RLG00000024796
rosa_roxburghii Rroxscaffold_6G00416750
rosa_samantha Rh3AG121100 Rh3BG125600 Rh3CG127500 Rh3DG126700
rosa_wichuraiana Rw3G010280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 333
AdeI CACNNNGTG 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 3 cut(s) 200, 390, 425
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 133, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 1 cut(s) 381
AluI AGCT 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 357
AoxI GGCC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 333
Asp700I GAANNNNTTC 1 cut(s) 142
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 3 cut(s) 111, 233, 305
AvaII GGWCC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 135, 291
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 3 cut(s) 378, 413, 419
Bme1390I CCNGG 2 cut(s) 135, 291
Bme18I GGWCC 1 cut(s) 401
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 2 cut(s) 135, 291
BpiI GAAGAC 1 cut(s) 188
Bsa29I ATCGAT 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 2 cut(s) 135, 291
BseCI ATCGAT 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 444
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 451
BshVI ATCGAT 1 cut(s) 79
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 357
BsnI GGCC 1 cut(s) 451
Bsp143I GATC 2 cut(s) 76, 392
BspACI CCGC 1 cut(s) 105
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 1 cut(s) 469
BspDI ATCGAT 1 cut(s) 79
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 441
BssMI GATC 2 cut(s) 76, 392
Bst2UI CCWGG 2 cut(s) 135, 291
Bst4CI ACNGT 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 456
BstEII GGTNACC 1 cut(s) 433
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 79, 395
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 2 cut(s) 76, 392
BstNI CCWGG 2 cut(s) 135, 291
BstNSI RCATGY 1 cut(s) 51
BstPI GGTNACC 1 cut(s) 433
BstSCI CCNGG 2 cut(s) 133, 289
BstUI CGCG 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 188
Bsu15I ATCGAT 1 cut(s) 79
BsuRI GGCC 1 cut(s) 451
BsuTUI ATCGAT 1 cut(s) 79
BtrI CACGTC 1 cut(s) 226
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 79
CsiI ACCWGGT 1 cut(s) 289
CviAII CATG 2 cut(s) 48, 218
CviJI RGCY 3 cut(s) 156, 381, 451
CviKI_1 RGCY 3 cut(s) 156, 381, 451
DdeI CTNAG 1 cut(s) 456
DpnI GATC 2 cut(s) 78, 394
DpnII GATC 2 cut(s) 76, 392
DraIII CACNNNGTG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 401
Eco91I GGTNACC 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 133, 289
FaeI CATG 2 cut(s) 51, 221
FaiI YATR 9 cut(s) 49, 59, 69, 116, 174, 219, 269, 321, 511
FatI CATG 2 cut(s) 47, 217
FspBI CTAG 3 cut(s) 378, 413, 419
GlaI GCGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 451
HapII CCGG 1 cut(s) 98
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 51, 221
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 386
HpaII CCGG 1 cut(s) 98
HphI GGTGA 3 cut(s) 111, 233, 305
Hpy188I TCNGA 2 cut(s) 76, 459
Hpy188III TCNNGA 2 cut(s) 338, 390
HpyAV CCTTC 2 cut(s) 335, 423
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 2 cut(s) 125, 225
HpyCH4V TGCA 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 2 cut(s) 125, 225
Hsp92II CATG 2 cut(s) 51, 221
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 76, 392
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 111, 120, 147, 276, 303, 351
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 3 cut(s) 378, 413, 419
MaeII ACGT 2 cut(s) 125, 225
MaeIII GTNAC 3 cut(s) 117, 221, 433
MalI GATC 2 cut(s) 78, 394
MboI GATC 2 cut(s) 76, 392
MboII GAAGA 3 cut(s) 188, 366, 498
MfeI CAATTG 1 cut(s) 162
MluCI AATT 5 cut(s) 162, 333, 405, 462, 498
MnlI CCTC 6 cut(s) 121, 255, 352, 420, 462, 465
MroXI GAANNNNTTC 1 cut(s) 142
MseI TTAA 2 cut(s) 128, 149
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 2 cut(s) 135, 291
MunI CAATTG 1 cut(s) 162
MvaI CCWGG 2 cut(s) 135, 291
MvnI CGCG 1 cut(s) 105
NdeII GATC 2 cut(s) 76, 392
NlaIII CATG 2 cut(s) 51, 221
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 117, 221
NspI RCATGY 1 cut(s) 51
PciI ACATGT 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 133
PscI ACATGT 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 133, 289
PspEI GGTNACC 1 cut(s) 433
PspGI CCWGG 2 cut(s) 133, 289
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 2 cut(s) 128, 149
Sau3AI GATC 2 cut(s) 76, 392
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 135, 291
SetI ASST 7 cut(s) 64, 124, 128, 228, 292, 383, 418
SexAI ACCWGGT 1 cut(s) 289
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 5 cut(s) 162, 333, 405, 462, 498
SsiI CCGC 1 cut(s) 105
SspMI CTAG 3 cut(s) 378, 413, 419
StyD4I CCNGG 2 cut(s) 133, 289
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 2 cut(s) 128, 228
TaqI TCGA 2 cut(s) 10, 79
TasI AATT 5 cut(s) 162, 333, 405, 462, 498
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 128, 149
Tru9I TTAA 2 cut(s) 128, 149
TseFI GTSAC 2 cut(s) 117, 221
Tsp45I GTSAC 2 cut(s) 117, 221
TspDTI ATGAA 1 cut(s) 498
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 1 cut(s) 333
XceI RCATGY 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 142
XspI CTAG 3 cut(s) 378, 413, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.