Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011438

Physical Location & Seq

Genomic Coordinates Reverse (-)

16681492 .. 16682706

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13710.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGAACTCGGAGTGGTTTGTGGAATTTCGGCAACAAGTTTTTCACATGTGGGATCATAGGCTTATATGTTTCAGACCGATTTGCGAGTGTTGCTCCGGTGCGTGGTTCCTCTATGTCGCCTACGTTAAACCCTGGAACTACTTCTTTGATGGGCTTGCCAATTGATGACTATGTTTTGGTGGAGAAACGGTGTCTTCAAAGCTACAAGTTTTCACATGGTGACGTGGTAGTTTTCCGCTCCCCAAGTAACCACAAGGAGAGTCACATAAAGAGAATAACTGCCTTACCTGGTGAGTGGATTGGAACACGTCGTTCCTATGATGTGGTGAAAATTCCAGAAGGACATTGTTGGGTTGAGGGAGACAATTCATCTTCTAGCTTGGATTCAAAGTCGTTTGGACCAATTCCTCTGGGTTTAGTTCAAGGAAGGGTTACCCACATTGTGTGGCCTCCTCAGAGAATGGGTGCTGTTGAGAGAATAACACCGCAAGACACGATTTCATCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

171

Amino Acids

18.68

Weight (kDa)

9.12

Isoelectric Point (pI)

60.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08980 AT3G08980 AT3G08980 AT3G08980 AT3G08980
fragaria_vesca	FvH4_6g11550 FvH4_6g28771
malus_domestica	MD04G1151200.v1.1 MD12G1165200.v1.1
prunus_persica	Prupe.6G276100_v2.0.a1
pyrus_communis	pycom04g13710 pycom12g15790
rosa_chinensis	RchiOBHm_Chr3g0463251
rosa_laevigata	RLG00000024796
rosa_roxburghii	Rroxscaffold_6G00416750
rosa_samantha	Rh3AG121100 Rh3BG125600 Rh3CG127500 Rh3DG126700
rosa_wichuraiana	Rw3G010280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	240
AciI	CCGC	2 cut(s)	238, 488
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	25, 333
AdeI	CACNNNGTG	2 cut(s)	221, 445
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	2 cut(s)	47, 308
AgsI	TTSAA	3 cut(s)	200, 390, 425
AjiI	CACGTC	2 cut(s)	226, 311
AjnI	CCWGG	2 cut(s)	133, 289
AluBI	AGCT	2 cut(s)	204, 381
AluI	AGCT	2 cut(s)	204, 381
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	25, 333
Asp700I	GAANNNNTTC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	233, 305, 340
AvaII	GGWCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	188
BccI	CCATC	1 cut(s)	145
BciT130I	CCWGG	2 cut(s)	135, 291
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	378
Bme1390I	CCNGG	2 cut(s)	135, 291
Bme18I	GGWCC	1 cut(s)	401
BmgBI	CACGTC	2 cut(s)	226, 311
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	2 cut(s)	135, 291
BpiI	GAAGAC	1 cut(s)	188
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	135, 291
BseDI	CCNNGG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	470
BseRI	GAGGAG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	451
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	2 cut(s)	238, 488
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	135, 291
Bst4CI	ACNGT	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	456
BstEII	GGTNACC	1 cut(s)	433
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	2 cut(s)	135, 291
BstNSI	RCATGY	1 cut(s)	51
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	133, 289
BstV2I	GAAGAC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	451
BtrI	CACGTC	2 cut(s)	226, 311
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	401
CsiI	ACCWGGT	1 cut(s)	289
CviAII	CATG	2 cut(s)	48, 218
CviJI	RGCY	5 cut(s)	63, 156, 204, 381, 451
CviKI_1	RGCY	5 cut(s)	63, 156, 204, 381, 451
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
DraIII	CACNNNGTG	2 cut(s)	221, 445
Eco47I	GGWCC	1 cut(s)	401
Eco91I	GGTNACC	1 cut(s)	433
EcoO65I	GGTNACC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	133, 289
FaeI	CATG	2 cut(s)	51, 221
FatI	CATG	2 cut(s)	47, 217
FspBI	CTAG	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	2 cut(s)	51, 221
HinfI	GANTC	2 cut(s)	262, 386
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	3 cut(s)	233, 305, 340
Hpy188I	TCNGA	3 cut(s)	12, 76, 459
Hpy188III	TCNNGA	1 cut(s)	338
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	2 cut(s)	335, 423
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	3 cut(s)	125, 225, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	3 cut(s)	125, 225, 310
Hsp92II	CATG	2 cut(s)	51, 221
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	2 cut(s)	100, 245
LpnPI	CCDG	7 cut(s)	111, 120, 147, 276, 303, 351, 398
MabI	ACCWGGT	1 cut(s)	289
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	3 cut(s)	125, 225, 310
MaeIII	GTNAC	4 cut(s)	221, 248, 263, 433
MalI	GATC	1 cut(s)	56
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	188, 366
MfeI	CAATTG	1 cut(s)	162
MluCI	AATT	5 cut(s)	25, 162, 333, 367, 405
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	5 cut(s)	121, 352, 420, 462, 465
MroXI	GAANNNNTTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	128
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	135, 291
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	135, 291
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	2 cut(s)	51, 221
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	221, 263
NspI	RCATGY	1 cut(s)	51
PciI	ACATGT	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	386
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PscI	ACATGT	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	133, 289
PspEI	GGTNACC	1 cut(s)	433
PspGI	CCWGG	2 cut(s)	133, 289
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	135, 291
SetI	ASST	6 cut(s)	128, 206, 228, 292, 313, 383
SexAI	ACCWGGT	1 cut(s)	289
SinI	GGWCC	1 cut(s)	401
Sse9I	AATT	5 cut(s)	25, 162, 333, 367, 405
SsiI	CCGC	2 cut(s)	238, 488
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	133, 289
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	3 cut(s)	128, 228, 313
TaqII	GACCGA	1 cut(s)	93
TasI	AATT	5 cut(s)	25, 162, 333, 367, 405
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TseFI	GTSAC	2 cut(s)	221, 263
Tsp45I	GTSAC	2 cut(s)	221, 263
TspDTI	ATGAA	2 cut(s)	360, 492
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	2 cut(s)	25, 333
XceI	RCATGY	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	142
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.