RLG00000024796

Mitochondrial inner membrane protease subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011438
Physical Location & Seq
Reverse (-)
39188015 .. 39190050
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024796

Sequence Viewer

Length: 783 bp
ATGAGGCTGAAGCGCGAAAGAGAGGAGAGACTAACGAGCGTTGTTGAAGCCCTAGCTTCCACAGTCCGTTTGCCCCTCGGCCCTTCCCAGAATCACGCGTCCCCAACCTGCCGGCTCTTTGATTTTAACTCCATTCTCCAACACTCCCACCGCCCACGGCGGCTTCTCCGATTTATTTCATCGGAGATTGCTCAAGGTGGCACCAGCTCTTGCTCCTTGATTGAATGCACACAAGATTCTTCTATTCTGCTTCGGCATTTGAGTATCTGCGGAAACCTGGACATGGGTACTCGGAAGGTTTTGTGGGGTTTCGCCAATAAGTTCTTTACGGTTGGGGTAGTGGGTCTCTGTATTTCAGATCGTTTTGTGAGTGTTGCTCCGGTGCGGGGTTCCTCTATGGCTCCTACATTGAATCCTGGAAAGACCAAGTTATTGGGGATGTCAACTGATGACTATGTTTTGCTGGAGAAAACGTGTCTTAACGATTACAAGTTTTCGCATGGTGATATTGTAGTCTTCCGCTCACCAAGTAATCACAAGGAGCGTCATATTAAGAGGATAACCGCCTTACCTGGTGATTGGATTGGAATTCGTAAATCCCACGATGTGCTGAAAGTTCCGGAGGGACATTGCTGGGTTGAGGGAGACAATTCATCTTCTAGCATGGATTCAAGATCTTTTGGCACAATTCCACTGGGTTTAGTTCAAGGAAGGGTGACCCACATCGTGTGGCCTCCTCAGAGAATTGGTGCCATTCAGAGAAATACGCTGCAGGACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24 Peptidase_S26

Protein Analysis

261

Amino Acids

28.94

Weight (kDa)

9.56

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 105 - 199 1.4e-12 Signal peptidase, peptidase S26
Peptidase_S26 PF10502 205 - 244 4.2e-08 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08980 AT3G08980 AT3G08980 AT3G08980 AT3G08980
fragaria_vesca FvH4_6g11550 FvH4_6g28771
malus_domestica MD04G1151200.v1.1 MD12G1165200.v1.1
prunus_persica Prupe.6G276100_v2.0.a1
pyrus_communis pycom04g13710 pycom12g15790
rosa_chinensis RchiOBHm_Chr3g0463251
rosa_laevigata RLG00000024796
rosa_roxburghii Rroxscaffold_6G00416750
rosa_samantha Rh3AG121100 Rh3BG125600 Rh3CG127500 Rh3DG126700
rosa_wichuraiana Rw3G010280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 116
AccB1I GGYRCC 2 cut(s) 200, 749
AccBSI CCGCTC 1 cut(s) 522
AccII CGCG 2 cut(s) 15, 98
AccIII TCCGGA 1 cut(s) 619
AciI CCGC 6 cut(s) 151, 160, 270, 385, 520, 564
AcsI RAATTY 1 cut(s) 588
AcuI CTGAAG 1 cut(s) 29
AdeI CACNNNGTG 2 cut(s) 607, 727
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 283, 386
AflIII ACRYGT 2 cut(s) 96, 473
AgsI TTSAA 5 cut(s) 47, 224, 412, 672, 707
AjnI CCWGG 3 cut(s) 276, 415, 571
AluBI AGCT 2 cut(s) 56, 207
AluI AGCT 2 cut(s) 56, 207
Alw26I GTCTC 3 cut(s) 22, 350, 639
Aor13HI TCCGGA 1 cut(s) 619
AoxI GGCC 2 cut(s) 79, 731
ApeKI GCWGC 1 cut(s) 769
ApoI RAATTY 1 cut(s) 588
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 4 cut(s) 515, 516, 587, 727
BanI GGYRCC 2 cut(s) 200, 749
BbsI GAAGAC 1 cut(s) 508
BbvI GCAGC 1 cut(s) 756
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 3 cut(s) 278, 417, 573
BcoDI GTCTC 3 cut(s) 22, 350, 639
BfaI CTAG 2 cut(s) 53, 660
BfmI CTRYAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 674
BisI GCNGC 2 cut(s) 161, 770
BlsI GCNGC 2 cut(s) 162, 771
Bme1390I CCNGG 3 cut(s) 278, 417, 573
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 4 cut(s) 202, 391, 402, 751
BmrFI CCNGG 3 cut(s) 278, 417, 573
BmrI ACTGGG 1 cut(s) 704
BmuI ACTGGG 1 cut(s) 704
BpiI GAAGAC 1 cut(s) 508
BplI GAGNNNNNCTC 2 cut(s) 361, 393
BpmI CTGGAG 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 76, 155
BsaWI WCCGGW 2 cut(s) 379, 619
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 386
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 699
Bse3DI GCAATG 1 cut(s) 628
BseAI TCCGGA 1 cut(s) 619
BseBI CCWGG 3 cut(s) 278, 417, 573
BseDI CCNNGG 2 cut(s) 76, 155
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 283, 386
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 1 cut(s) 752
BseNI ACTGG 1 cut(s) 699
BseRI GAGGAG 2 cut(s) 38, 726
BseXI GCAGC 1 cut(s) 756
BseYI CCCAGC 1 cut(s) 633
Bsh1236I CGCG 2 cut(s) 15, 98
BshFI GGCC 2 cut(s) 81, 733
BshNI GGYRCC 2 cut(s) 200, 749
BsiSI CCGG 3 cut(s) 112, 380, 620
BslFI GGGAC 2 cut(s) 85, 639
BslI CCNNNNNNNGG 2 cut(s) 283, 386
BsmAI GTCTC 3 cut(s) 22, 350, 639
BsmFI GGGAC 2 cut(s) 85, 639
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 2 cut(s) 81, 733
Bso31I GGTCTC 1 cut(s) 350
Bsp13I TCCGGA 1 cut(s) 619
Bsp143I GATC 2 cut(s) 358, 674
BspACI CCGC 6 cut(s) 151, 160, 270, 385, 520, 564
BspANI GGCC 2 cut(s) 81, 733
BspCNI CTCAG 1 cut(s) 751
BspEI TCCGGA 1 cut(s) 619
BspFNI CGCG 2 cut(s) 15, 98
BspLI GGNNCC 4 cut(s) 202, 391, 402, 751
BspMAI CTGCAG 1 cut(s) 774
BspMI ACCTGC 1 cut(s) 116
BspT107I GGYRCC 2 cut(s) 200, 749
BspTNI GGTCTC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 628
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 1 cut(s) 699
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 76, 155
BssMI GATC 2 cut(s) 358, 674
Bst2UI CCWGG 3 cut(s) 278, 417, 573
Bst4CI ACNGT 2 cut(s) 64, 331
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 738
BstDSI CCRYGG 1 cut(s) 155
BstEII GGTNACC 1 cut(s) 715
BstF5I GGATG 1 cut(s) 444
BstFNI CGCG 2 cut(s) 15, 98
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 2 cut(s) 361, 677
BstMAI GTCTC 3 cut(s) 22, 350, 639
BstMBI GATC 2 cut(s) 358, 674
BstNI CCWGG 3 cut(s) 278, 417, 573
BstPI GGTNACC 1 cut(s) 715
BstSCI CCNGG 3 cut(s) 276, 415, 571
BstSFI CTRYAG 1 cut(s) 770
BstUI CGCG 2 cut(s) 15, 98
BstV1I GCAGC 1 cut(s) 756
BstV2I GAAGAC 1 cut(s) 508
BstX2I RGATCY 1 cut(s) 674
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 1 cut(s) 674
BsuRI GGCC 2 cut(s) 81, 733
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 692
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 80
CseI GACGC 2 cut(s) 87, 533
CsiI ACCWGGT 1 cut(s) 571
Csp6I GTAC 1 cut(s) 288
CviAII CATG 3 cut(s) 283, 500, 664
CviJI RGCY 9 cut(s) 7, 50, 56, 81, 115, 163, 207, 401, 733
CviKI_1 RGCY 9 cut(s) 7, 50, 56, 81, 115, 163, 207, 401, 733
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 1 cut(s) 738
DpnI GATC 2 cut(s) 360, 676
DpnII GATC 2 cut(s) 358, 674
DraIII CACNNNGTG 2 cut(s) 607, 727
Eco31I GGTCTC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 715
EcoO65I GGTNACC 1 cut(s) 715
EcoRI GAATTC 1 cut(s) 588
EcoRII CCWGG 3 cut(s) 276, 415, 571
FaeI CATG 3 cut(s) 286, 503, 667
FaiI YATR 6 cut(s) 284, 398, 456, 501, 549, 665
FaqI GGGAC 2 cut(s) 85, 639
FatI CATG 3 cut(s) 282, 499, 663
FauI CCCGC 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 161, 770
FokI GGATG 1 cut(s) 451
Fsp4HI GCNGC 2 cut(s) 161, 770
FspBI CTAG 2 cut(s) 53, 660
GlaI GCGC 1 cut(s) 14
GluI GCNGC 2 cut(s) 161, 770
GsaI CCCAGC 1 cut(s) 637
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 2 cut(s) 81, 733
HapII CCGG 3 cut(s) 112, 380, 620
HgaI GACGC 2 cut(s) 87, 533
HhaI GCGC 1 cut(s) 15
Hin1II CATG 3 cut(s) 286, 503, 667
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 4 cut(s) 91, 236, 412, 668
HpaII CCGG 3 cut(s) 112, 380, 620
HphI GGTGA 4 cut(s) 515, 516, 587, 727
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 6 cut(s) 170, 184, 294, 358, 741, 759
Hpy188III TCNNGA 2 cut(s) 620, 672
Hpy8I GTNNAC 1 cut(s) 444
HpyAV CCTTC 3 cut(s) 93, 289, 705
HpyCH4III ACNGT 2 cut(s) 64, 331
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 2 cut(s) 228, 772
HpyF3I CTNAG 1 cut(s) 738
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 3 cut(s) 286, 503, 667
HspAI GCGC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 619
KroI GCCGGC 1 cut(s) 111
KroNI GCCGGC 1 cut(s) 113
Kzo9I GATC 2 cut(s) 358, 674
LmnI GCTCC 4 cut(s) 218, 382, 406, 541
Lsp1109I GCAGC 1 cut(s) 756
MabI ACCWGGT 1 cut(s) 571
MaeI CTAG 2 cut(s) 53, 660
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 1 cut(s) 715
MalI GATC 2 cut(s) 360, 676
MbiI CCGCTC 1 cut(s) 522
MboI GATC 2 cut(s) 358, 674
MboII GAAGA 3 cut(s) 231, 508, 648
MfeI CAATTG 1 cut(s) 778
MflI RGATCY 1 cut(s) 674
MluCI AATT 5 cut(s) 588, 649, 687, 744, 778
MluI ACGCGT 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 8 cut(s) 16, 86, 403, 549, 616, 634, 744, 747
MroI TCCGGA 1 cut(s) 619
MroNI GCCGGC 1 cut(s) 111
MseI TTAA 3 cut(s) 126, 480, 552
MspI CCGG 3 cut(s) 112, 380, 620
MspR9I CCNGG 3 cut(s) 278, 417, 573
MunI CAATTG 1 cut(s) 778
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 3 cut(s) 278, 417, 573
MvnI CGCG 2 cut(s) 15, 98
NaeI GCCGGC 1 cut(s) 113
NdeII GATC 2 cut(s) 358, 674
NgoMIV GCCGGC 1 cut(s) 111
NlaIII CATG 3 cut(s) 286, 503, 667
NlaIV GGNNCC 4 cut(s) 202, 391, 402, 751
NmeAIII GCCGAG 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 715
PctI GAATGC 1 cut(s) 230
PdiI GCCGGC 1 cut(s) 113
PfeI GAWTC 4 cut(s) 91, 236, 412, 668
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 2 cut(s) 162, 771
Psp6I CCWGG 3 cut(s) 276, 415, 571
PspEI GGTNACC 1 cut(s) 715
PspFI CCCAGC 1 cut(s) 633
PspGI CCWGG 3 cut(s) 276, 415, 571
PspN4I GGNNCC 4 cut(s) 202, 391, 402, 751
PspPI GGNCC 1 cut(s) 80
PstI CTGCAG 1 cut(s) 774
PsuI RGATCY 1 cut(s) 674
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SaqAI TTAA 3 cut(s) 126, 480, 552
SatI GCNGC 2 cut(s) 161, 770
Sau3AI GATC 2 cut(s) 358, 674
Sau96I GGNCC 1 cut(s) 80
ScrFI CCNGG 3 cut(s) 278, 417, 573
SetI ASST 8 cut(s) 58, 110, 199, 209, 279, 300, 476, 574
SexAI ACCWGGT 1 cut(s) 571
SfcI CTRYAG 1 cut(s) 770
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 5 cut(s) 588, 649, 687, 744, 778
SsiI CCGC 6 cut(s) 151, 160, 270, 385, 520, 564
SspMI CTAG 2 cut(s) 53, 660
StyD4I CCNGG 3 cut(s) 276, 415, 571
TaaI ACNGT 2 cut(s) 64, 331
TaiI ACGT 1 cut(s) 476
TasI AATT 5 cut(s) 588, 649, 687, 744, 778
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 4 cut(s) 91, 236, 412, 668
Tru1I TTAA 3 cut(s) 126, 480, 552
Tru9I TTAA 3 cut(s) 126, 480, 552
TscAI CASTG 1 cut(s) 699
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 1 cut(s) 769
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 2 cut(s) 168, 642
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 699
XapI RAATTY 1 cut(s) 588
XspI CTAG 2 cut(s) 53, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.