Rh3BG125600

Mitochondrial inner membrane protease subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011438
Physical Location & Seq
Forward (+)
10338672 .. 10339817
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG125600.1

Sequence Viewer

Length: 501 bp
ATGGGTACTCGGAAGGTTTTGTGGGGTTTCGCCAATAAGTTCTTTACGGTTGGGGCAGTGGGTCTCTGTATTTCAGATCGTTTTGTGAGTGTTGCTCCGGTGCGGGGTTCCTCTATGGCTCCTACATTGAATCCTGGAAAGACCAAATTATTGGGGATGTCAACTGATGACTATGTTTTGCTGGAGAAAACGTGTCTTAACGATTACAAGTTTTCGCATGGTGATATTGTAGTCTTCAGCTCACCAAGTAATCACAAGGAGCGTCATATTAAGAGAATAACCGCCTTACCTGGTGATTGGATTGGAATTCGTAAGTCCTACGATGTGCTGAAAGTTCCGGAGGGACATTGCTGGGTTGAGGGAGACAATTCATCTTCTAGCATGGATTCAAGATCTTTTGGCACAATTCCACTGGGTTTAGTTCAAGGAAGGGTGACCCACATCGTGTGGCCTCCTCAGAGAATAGGTGCTATTCAGAGAAATACGCTGCAGGACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
Peptidase_S24 Peptidase_S26

Protein Analysis

166

Amino Acids

18.33

Weight (kDa)

9.44

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 11 - 105 1.8e-12 Signal peptidase, peptidase S26
Peptidase_S26 PF10502 111 - 150 2.6e-08 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08980 AT3G08980 AT3G08980 AT3G08980 AT3G08980
fragaria_vesca FvH4_6g11550 FvH4_6g28771
malus_domestica MD04G1151200.v1.1 MD12G1165200.v1.1
prunus_persica Prupe.6G276100_v2.0.a1
pyrus_communis pycom04g13710 pycom12g15790
rosa_chinensis RchiOBHm_Chr3g0463251
rosa_laevigata RLG00000024796
rosa_roxburghii Rroxscaffold_6G00416750
rosa_samantha Rh3AG121100 Rh3BG125600 Rh3CG127500 Rh3DG126700
rosa_wichuraiana Rw3G010280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 2 cut(s) 103, 282
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 220
AdeI CACNNNGTG 1 cut(s) 445
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 3 cut(s) 130, 390, 425
AjnI CCWGG 2 cut(s) 133, 289
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw26I GTCTC 2 cut(s) 68, 357
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 1 cut(s) 487
ApoI RAATTY 1 cut(s) 306
AsuHPI GGTGA 4 cut(s) 233, 234, 305, 445
BbsI GAAGAC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 474
BciT130I CCWGG 2 cut(s) 135, 291
BcoDI GTCTC 2 cut(s) 68, 357
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 488
BglII AGATCT 1 cut(s) 392
BisI GCNGC 1 cut(s) 488
BlsI GCNGC 1 cut(s) 489
Bme1390I CCNGG 2 cut(s) 135, 291
BmiI GGNNCC 2 cut(s) 109, 120
BmrFI CCNGG 2 cut(s) 135, 291
BmrI ACTGGG 1 cut(s) 422
BmuI ACTGGG 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 226
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BpmI CTGGAG 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 68
BsaWI WCCGGW 2 cut(s) 97, 337
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 346
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 2 cut(s) 135, 291
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 1 cut(s) 417
BseRI GAGGAG 1 cut(s) 444
BseXI GCAGC 1 cut(s) 474
BseYI CCCAGC 1 cut(s) 351
BshFI GGCC 1 cut(s) 451
BsiSI CCGG 2 cut(s) 98, 338
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 68, 357
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 1 cut(s) 451
Bso31I GGTCTC 1 cut(s) 68
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 2 cut(s) 76, 392
BspACI CCGC 2 cut(s) 103, 282
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 1 cut(s) 469
BspEI TCCGGA 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 109, 120
BspMAI CTGCAG 1 cut(s) 492
BspTNI GGTCTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 1 cut(s) 417
BssMI GATC 2 cut(s) 76, 392
Bst2UI CCWGG 2 cut(s) 135, 291
Bst4CI ACNGT 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 456
BstEII GGTNACC 1 cut(s) 433
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 2 cut(s) 79, 395
BstMAI GTCTC 2 cut(s) 68, 357
BstMBI GATC 2 cut(s) 76, 392
BstNI CCWGG 2 cut(s) 135, 291
BstPI GGTNACC 1 cut(s) 433
BstSCI CCNGG 2 cut(s) 133, 289
BstSFI CTRYAG 1 cut(s) 488
BstV1I GCAGC 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 392
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 1 cut(s) 392
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 410
CseI GACGC 1 cut(s) 251
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 1 cut(s) 6
CviAII CATG 2 cut(s) 218, 382
CviJI RGCY 3 cut(s) 119, 240, 451
CviKI_1 RGCY 3 cut(s) 119, 240, 451
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 456
DpnI GATC 2 cut(s) 78, 394
DpnII GATC 2 cut(s) 76, 392
DraIII CACNNNGTG 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 220
Eco91I GGTNACC 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 133, 289
FaeI CATG 2 cut(s) 221, 385
FaiI YATR 5 cut(s) 116, 174, 219, 267, 383
FaqI GGGAC 1 cut(s) 357
FatI CATG 2 cut(s) 217, 381
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 488
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 488
FspBI CTAG 1 cut(s) 378
GluI GCNGC 1 cut(s) 488
GsaI CCCAGC 1 cut(s) 355
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 451
HapII CCGG 2 cut(s) 98, 338
HgaI GACGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 221, 385
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 2 cut(s) 130, 386
HpaII CCGG 2 cut(s) 98, 338
HphI GGTGA 4 cut(s) 233, 234, 305, 445
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 4 cut(s) 12, 76, 459, 477
Hpy188III TCNNGA 2 cut(s) 338, 390
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 7, 423
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 490
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 2 cut(s) 221, 385
Kpn2I TCCGGA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 76, 392
LmnI GCTCC 3 cut(s) 100, 124, 259
Lsp1109I GCAGC 1 cut(s) 474
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 1 cut(s) 378
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 433
MalI GATC 2 cut(s) 78, 394
MboI GATC 2 cut(s) 76, 392
MboII GAAGA 2 cut(s) 226, 366
MfeI CAATTG 1 cut(s) 496
MflI RGATCY 1 cut(s) 392
MluCI AATT 5 cut(s) 146, 306, 367, 405, 496
MnlI CCTC 5 cut(s) 121, 334, 352, 462, 465
MroI TCCGGA 1 cut(s) 337
MseI TTAA 2 cut(s) 198, 270
MspI CCGG 2 cut(s) 98, 338
MspR9I CCNGG 2 cut(s) 135, 291
MunI CAATTG 1 cut(s) 496
MvaI CCWGG 2 cut(s) 135, 291
NdeII GATC 2 cut(s) 76, 392
NlaIII CATG 2 cut(s) 221, 385
NlaIV GGNNCC 2 cut(s) 109, 120
NmuCI GTSAC 1 cut(s) 433
PfeI GAWTC 2 cut(s) 130, 386
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 133, 289
PspEI GGTNACC 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 2 cut(s) 133, 289
PspN4I GGNNCC 2 cut(s) 109, 120
PstI CTGCAG 1 cut(s) 492
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 198, 270
SatI GCNGC 1 cut(s) 488
Sau3AI GATC 2 cut(s) 76, 392
ScrFI CCNGG 2 cut(s) 135, 291
SetI ASST 5 cut(s) 18, 194, 242, 292, 469
SexAI ACCWGGT 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 488
Sse9I AATT 5 cut(s) 146, 306, 367, 405, 496
SsiI CCGC 2 cut(s) 103, 282
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 133, 289
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 194
TasI AATT 5 cut(s) 146, 306, 367, 405, 496
TfiI GAWTC 2 cut(s) 130, 386
Tru1I TTAA 2 cut(s) 198, 270
Tru9I TTAA 2 cut(s) 198, 270
TscAI CASTG 2 cut(s) 63, 417
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 487
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 1 cut(s) 360
TspRI CASTG 2 cut(s) 63, 417
XapI RAATTY 1 cut(s) 306
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.