AT3G09032

Josephin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015898
Physical Location & Seq
Reverse (-)
2757326 .. 2758349
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09032.1

Sequence Viewer

Length: 441 bp
ATGTCACGAAGAGCATGCAAAAGAGTAAGCTTTAACCCGAACCCAGAAGCCACAGACGAACCCATATTCCCAAAACACGACGGTTTAAGCTCGTCACATCACAGCCGGAGAAGGGTGGTTCTCGTCGGAATTCTCAGTTTTGGTCTAAGGAGCTCGCCGGCCGCGAGGAAATTGATCCAACGTATTGGAGCAAGATTCGCCAAAACGCTGCGTTTTATTTCCTTCAGAAGAAATACTACTGATAGAAGAAAAACGTCATCGTTTTTGTTGCCTTCGTCGTCGTCGTCTTCTTCTTCGTCAGCTATTTATATGAAGAGGTCAAAGTCTGTAAACGAGACAGAGTCTCATCGAGCAGAAGCTATTGAAGATTGCATTGAGTTCTTGAACTCTTCTTTTCCTCTGTCGAGATCAAACTCAGTCTCAACGTGGTCTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.36

Weight (kDa)

11.36

Isoelectric Point (pI)

97.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09032 AT5G01225
fragaria_vesca FvH4_6g11920
malus_domestica MD12G1161500.v1.1
prunus_persica Prupe.6G271900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0463681
rosa_laevigata RLG00000024764
rosa_multiflora Rmu_sc0003267.1_g000032
rosa_roxburghii Rroxscaffold_6G00416370
rosa_rugosa Rorug03G0066900
rosa_samantha Rh3AG124000 Rh3BG128600 Rh3CG130800 Rh3DG129200
rosa_wichuraiana Rw3G010480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 164
AciI CCGC 1 cut(s) 162
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 365, 385
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AluBI AGCT 5 cut(s) 30, 90, 153, 302, 359
AluI AGCT 5 cut(s) 30, 90, 153, 302, 359
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 3 cut(s) 329, 348, 424
AlwI GGATC 1 cut(s) 169
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 129
BanII GRGCYC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 220, 252
BbsI GAAGAC 2 cut(s) 279, 423
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 195
BcgI CGANNNNNNTGC 1 cut(s) 31
BcoDI GTCTC 3 cut(s) 329, 348, 424
BisI GCNGC 2 cut(s) 162, 209
BlsI GCNGC 2 cut(s) 163, 210
BpiI GAAGAC 2 cut(s) 279, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse118I RCCGGY 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 148, 429
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 2 cut(s) 106, 158
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 3 cut(s) 329, 348, 424
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 174, 407
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 147, 428
BspFNI CGCG 1 cut(s) 164
BspPI GGATC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 157
BssMI GATC 2 cut(s) 174, 407
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 3 cut(s) 4, 308, 394
BstC8I GCNNGC 3 cut(s) 16, 155, 159
BstDEI CTNAG 3 cut(s) 134, 146, 415
BstFNI CGCG 1 cut(s) 164
BstKTI GATC 2 cut(s) 177, 410
BstMAI GTCTC 3 cut(s) 329, 348, 424
BstMBI GATC 2 cut(s) 174, 407
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 18
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 195
BstV2I GAAGAC 2 cut(s) 279, 423
BstXI CCANNNNNNTGG 1 cut(s) 185
BstZI CGGCCG 1 cut(s) 159
BsuRI GGCC 1 cut(s) 161
Cac8I GCNNGC 3 cut(s) 16, 155, 159
Cfr10I RCCGGY 1 cut(s) 157
CviAII CATG 1 cut(s) 15
CviJI RGCY 8 cut(s) 30, 50, 90, 105, 153, 161, 302, 359
CviKI_1 RGCY 8 cut(s) 30, 50, 90, 105, 153, 161, 302, 359
DdeI CTNAG 3 cut(s) 134, 146, 415
DpnI GATC 2 cut(s) 176, 409
DpnII GATC 2 cut(s) 174, 407
EaeI YGGCCR 1 cut(s) 159
EagI CGGCCG 1 cut(s) 159
Eam1104I CTCTTC 3 cut(s) 4, 308, 394
EarI CTCTTC 3 cut(s) 4, 308, 394
Ecl136II GAGCTC 1 cut(s) 153
EclXI CGGCCG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 155
Eco52I CGGCCG 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 208
EcoICRI GAGCTC 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 1 cut(s) 18
FaiI YATR 4 cut(s) 16, 65, 309, 311
FatI CATG 1 cut(s) 14
Fnu4HI GCNGC 2 cut(s) 162, 209
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 162, 209
GluI GCNGC 2 cut(s) 162, 209
HaeIII GGCC 1 cut(s) 161
HapII CCGG 2 cut(s) 106, 158
Hin1II CATG 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 2 cut(s) 195, 341
HpaII CCGG 2 cut(s) 106, 158
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 2 cut(s) 128, 227
Hpy188III TCNNGA 4 cut(s) 6, 382, 405, 438
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 5 cut(s) 83, 128, 280, 283, 286
HpyAV CCTTC 3 cut(s) 105, 232, 282
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 3 cut(s) 181, 254, 425
HpyCH4V TGCA 2 cut(s) 18, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 3 cut(s) 134, 146, 415
HpySE526I ACGT 3 cut(s) 181, 254, 425
Hsp92II CATG 1 cut(s) 18
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Kzo9I GATC 2 cut(s) 174, 407
LguI GCTCTTC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 150, 188
LpnPI CCDG 3 cut(s) 57, 119, 171
Lsp1109I GCAGC 1 cut(s) 195
MaeII ACGT 3 cut(s) 181, 254, 425
MaeIII GTNAC 2 cut(s) 3, 93
MalI GATC 2 cut(s) 176, 409
MboI GATC 2 cut(s) 174, 407
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 2 cut(s) 129, 170
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 2 cut(s) 106, 202
MnlI CCTC 3 cut(s) 159, 309, 408
MroNI GCCGGC 1 cut(s) 157
MseI TTAA 2 cut(s) 33, 86
MspI CCGG 2 cut(s) 106, 158
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 197
NaeI GCCGGC 1 cut(s) 159
NdeII GATC 2 cut(s) 174, 407
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 3, 93
NspI RCATGY 1 cut(s) 18
PaeI GCATGC 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 4
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 281
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 195
PflFI GACNNNGTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 163, 210
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp124BI GAGCTC 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 340
SacI GAGCTC 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 33, 86
SatI GCNGC 2 cut(s) 162, 209
Sau3AI GATC 2 cut(s) 174, 407
SchI GAGTC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 155
SetI ASST 9 cut(s) 32, 92, 155, 184, 257, 304, 320, 361, 428
SphI GCATGC 1 cut(s) 18
Sse9I AATT 2 cut(s) 129, 170
SsiI CCGC 1 cut(s) 162
SstI GAGCTC 1 cut(s) 155
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 3 cut(s) 184, 257, 428
TaqI TCGA 2 cut(s) 349, 404
TasI AATT 2 cut(s) 129, 170
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 33, 86
Tru9I TTAA 2 cut(s) 33, 86
TseFI GTSAC 2 cut(s) 3, 93
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 2 cut(s) 3, 93
TspDTI ATGAA 1 cut(s) 326
Tth111I GACNNNGTC 1 cut(s) 340
XapI RAATTY 1 cut(s) 129
XceI RCATGY 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.