AT5G01225

Josephin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015898
Physical Location & Seq
Forward (+)
91786 .. 92438
653 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01225.1

Sequence Viewer

Length: 405 bp
ATGTCTCGAAGAGCATCCAAAAGAGTACGCTTTAGTCCGGACCCAGAAGCAAACGACGAACTGATCTTCCCAACACACAGCTCATCACGGCATGGTCGCAGGAGGGTCGTTGTTGGAATATTCAGTTTCAGCTTCAGTGACTCGCCGGCAACGACGAAGAGATTACTCCGCAGTATTGGAGACAGAGTTGGCAAAACGTTTCGTTATATATCATTCGGCAGGATGAACACCAAAACGACACCGTCATCTTCCAGTAACGTTTCTTCGTCTCTTTATTTGATGAAGTCAAAGTCTCTAAACGGATCAGAGTCTCACCGTGCAGAAGCCATTGAGGACTGCATTGAGTTCTTAAACTCTTGCTCTTCTTTGTCGAGATCAAACTCGATCTCTACCTGGTCTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.01

Weight (kDa)

10.84

Isoelectric Point (pI)

77.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09032 AT5G01225
fragaria_vesca FvH4_6g11920
malus_domestica MD12G1161500.v1.1
prunus_persica Prupe.6G271900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0463681
rosa_laevigata RLG00000024764
rosa_multiflora Rmu_sc0003267.1_g000032
rosa_roxburghii Rroxscaffold_6G00416370
rosa_rugosa Rorug03G0066900
rosa_samantha Rh3AG124000 Rh3BG128600 Rh3CG130800 Rh3DG129200
rosa_wichuraiana Rw3G010480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 1 cut(s) 169
AclI AACGTT 2 cut(s) 197, 258
AclWI GGATC 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 1 cut(s) 27
AjnI CCWGG 1 cut(s) 392
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AluBI AGCT 2 cut(s) 81, 132
AluI AGCT 2 cut(s) 81, 132
Alw26I GTCTC 5 cut(s) 9, 174, 273, 297, 315
AlwI GGATC 1 cut(s) 310
Aor13HI TCCGGA 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 40
BarI GAAGNNNNNNTAC 2 cut(s) 247, 279
BceAI ACGGC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 1 cut(s) 394
BcoDI GTCTC 5 cut(s) 9, 174, 273, 297, 315
Bme1390I CCNGG 1 cut(s) 394
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bse118I RCCGGY 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 37
BseBI CCWGG 1 cut(s) 394
BseGI GGATG 2 cut(s) 14, 228
BseNI ACTGG 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 339
BsiSI CCGG 2 cut(s) 38, 146
BsmAI GTCTC 5 cut(s) 9, 174, 273, 297, 315
BsmBI CGTCTC 1 cut(s) 273
Bsp13I TCCGGA 1 cut(s) 37
Bsp143I GATC 4 cut(s) 63, 302, 374, 384
BspACI CCGC 1 cut(s) 169
BspEI TCCGGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 1 cut(s) 310
BspQI GCTCTTC 2 cut(s) 4, 367
BsrFI RCCGGY 1 cut(s) 145
BsrI ACTGG 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 145
BssMI GATC 4 cut(s) 63, 302, 374, 384
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 2 cut(s) 243, 317
Bst6I CTCTTC 3 cut(s) 4, 152, 367
BstC8I GCNNGC 1 cut(s) 147
BstF5I GGATG 2 cut(s) 14, 228
BstKTI GATC 4 cut(s) 66, 305, 377, 387
BstMAI GTCTC 5 cut(s) 9, 174, 273, 297, 315
BstMBI GATC 4 cut(s) 63, 302, 374, 384
BstNI CCWGG 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 392
BtsCI GGATG 2 cut(s) 14, 228
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 40
CsiI ACCWGGT 1 cut(s) 392
Csp6I GTAC 1 cut(s) 26
CviAII CATG 1 cut(s) 92
CviJI RGCY 3 cut(s) 81, 132, 326
CviKI_1 RGCY 3 cut(s) 81, 132, 326
CviQI GTAC 1 cut(s) 26
DpnI GATC 4 cut(s) 65, 304, 376, 386
DpnII GATC 4 cut(s) 63, 302, 374, 384
Eam1104I CTCTTC 3 cut(s) 4, 152, 367
EarI CTCTTC 3 cut(s) 4, 152, 367
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 392
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 1 cut(s) 95
FaiI YATR 3 cut(s) 93, 207, 209
FatI CATG 1 cut(s) 91
FokI GGATG 1 cut(s) 235
HapII CCGG 2 cut(s) 38, 146
Hin1II CATG 1 cut(s) 95
HinfI GANTC 2 cut(s) 140, 308
HpaII CCGG 2 cut(s) 38, 146
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 3 cut(s) 6, 38, 372
Hpy99I CGWCG 2 cut(s) 59, 157
HpyCH4III ACNGT 2 cut(s) 243, 317
HpyCH4IV ACGT 2 cut(s) 197, 258
HpyCH4V TGCA 2 cut(s) 320, 339
HpySE526I ACGT 2 cut(s) 197, 258
Hsp92II CATG 1 cut(s) 95
Kpn2I TCCGGA 1 cut(s) 37
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Kzo9I GATC 4 cut(s) 63, 302, 374, 384
LguI GCTCTTC 2 cut(s) 4, 367
LpnPI CCDG 7 cut(s) 51, 57, 85, 159, 205, 265, 379
LweI GCATC 1 cut(s) 23
MabI ACCWGGT 1 cut(s) 392
MaeII ACGT 2 cut(s) 197, 258
MaeIII GTNAC 2 cut(s) 137, 254
MalI GATC 4 cut(s) 65, 304, 376, 386
MboI GATC 4 cut(s) 63, 302, 374, 384
MboII GAAGA 6 cut(s) 21, 58, 169, 240, 255, 354
MlyI GAGTC 2 cut(s) 134, 317
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 2 cut(s) 96, 325
MroI TCCGGA 1 cut(s) 37
MroNI GCCGGC 1 cut(s) 145
MseI TTAA 1 cut(s) 350
MspI CCGG 2 cut(s) 38, 146
MspR9I CCNGG 1 cut(s) 394
MvaI CCWGG 1 cut(s) 394
NaeI GCCGGC 1 cut(s) 147
NdeII GATC 4 cut(s) 63, 302, 374, 384
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 137
PciSI GCTCTTC 2 cut(s) 4, 367
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 241
PleI GAGTC 2 cut(s) 134, 316
PpsI GAGTC 2 cut(s) 134, 316
Psp1406I AACGTT 2 cut(s) 197, 258
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 241
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SapI GCTCTTC 2 cut(s) 4, 367
SaqAI TTAA 1 cut(s) 350
Sau3AI GATC 4 cut(s) 63, 302, 374, 384
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 134, 317
ScrFI CCNGG 1 cut(s) 394
SetI ASST 5 cut(s) 83, 134, 200, 261, 395
SexAI ACCWGGT 1 cut(s) 392
SfaNI GCATC 1 cut(s) 23
SinI GGWCC 1 cut(s) 40
SsiI CCGC 1 cut(s) 169
SspI AATATT 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 392
TaaI ACNGT 2 cut(s) 243, 317
TaiI ACGT 2 cut(s) 200, 261
TaqI TCGA 3 cut(s) 7, 371, 383
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 239, 296
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 1 cut(s) 142
Tth111I GACNNNGTC 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.