Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015898

Physical Location & Seq

Genomic Coordinates Reverse (-)

7138496 .. 7138897

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCAAGGCAATCGAGCAGGCGTGTGAGTTTTAGTCCTGATGTGTATGATCATGTCTATGATCATAAGCCAATCATGTATCTGAAAGAGAGTGGTGGCACCAGAGTTGGTGGAAACAGAAACATGGCAACTGGAATTTGGGCTTTCAGGCAGCTCAATGATACAAATTCACTCTCTGCTCCGGTGAGATTTCTACGTGGACTCAGGGCTAAGGTGTCTAGAGTTATGTCAGCAAGGAAGAGGAGTTCACGTAAGGTGTCTTCATCTAACCTTACAAGGTCAAGGTCTGTGTCAGATCCCATCGAGTCTCATCGAGCTGAAGCGCTAGAGGATTGCATCGAGTTCTTGAATTCTGCTTCCTCTCTACAGAGAACGAGTTCAGTTACTTCAAATTGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.89

Weight (kDa)

10.61

Isoelectric Point (pI)

76.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09032 AT5G01225
fragaria_vesca	FvH4_6g11920
malus_domestica	MD12G1161500.v1.1
prunus_persica	Prupe.6G271900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463681
rosa_laevigata	RLG00000024764
rosa_multiflora	Rmu_sc0003267.1_g000032
rosa_roxburghii	Rroxscaffold_6G00416370
rosa_rugosa	Rorug03G0066900
rosa_samantha	Rh3AG124000 Rh3BG128600 Rh3CG130800 Rh3DG129200
rosa_wichuraiana	Rw3G010480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	3 cut(s)	135, 166, 349
AcuI	CTGAAG	1 cut(s)	339
AfeI	AGCGCT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	349, 390
AloI	GAACNNNNNNTCC	2 cut(s)	229, 261
AluBI	AGCT	2 cut(s)	154, 317
AluI	AGCT	2 cut(s)	154, 317
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	290
Aor51HI	AGCGCT	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	3 cut(s)	135, 166, 349
Asp700I	GAANNNNTTC	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	244, 276
BbsI	GAAGAC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	308
BclI	TGATCA	2 cut(s)	49, 61
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	3 cut(s)	219, 326, 400
BfmI	CTRYAG	1 cut(s)	365
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	210
BsaAI	YACGTR	2 cut(s)	197, 251
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bse1I	ACTGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	163
BshNI	GGYRCC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	49, 61, 295
BspCNI	CTCAG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	136
BssMI	GATC	3 cut(s)	49, 61, 295
Bst6I	CTCTTC	1 cut(s)	233
BstBAI	YACGTR	2 cut(s)	197, 251
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	203, 210
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	3 cut(s)	52, 64, 298
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	3 cut(s)	49, 61, 295
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	325
CviAII	CATG	3 cut(s)	53, 76, 124
CviJI	RGCY	5 cut(s)	70, 143, 154, 209, 317
CviKI_1	RGCY	5 cut(s)	70, 143, 154, 209, 317
DdeI	CTNAG	2 cut(s)	203, 210
DpnI	GATC	3 cut(s)	51, 63, 297
DpnII	GATC	3 cut(s)	49, 61, 295
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco47III	AGCGCT	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	349
FaeI	CATG	3 cut(s)	56, 79, 127
FaiI	YATR	7 cut(s)	48, 54, 60, 66, 77, 125, 227
FatI	CATG	3 cut(s)	52, 75, 123
FbaI	TGATCA	2 cut(s)	49, 61
Fnu4HI	GCNGC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	3 cut(s)	219, 326, 400
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	326
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	56, 79, 127
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	2 cut(s)	201, 305
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	200, 248
Hpy188I	TCNGA	2 cut(s)	84, 295
Hpy188III	TCNNGA	3 cut(s)	38, 219, 346
Hpy8I	GTNNAC	2 cut(s)	200, 248
HpyCH4IV	ACGT	2 cut(s)	196, 250
HpyCH4V	TGCA	1 cut(s)	336
HpyF3I	CTNAG	2 cut(s)	203, 210
HpySE526I	ACGT	2 cut(s)	196, 250
Hsp92II	CATG	3 cut(s)	56, 79, 127
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	2 cut(s)	49, 61
Kzo9I	GATC	3 cut(s)	49, 61, 295
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	7 cut(s)	4, 51, 115, 117, 133, 190, 195
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	3 cut(s)	219, 326, 400
MaeII	ACGT	2 cut(s)	196, 250
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	3 cut(s)	51, 63, 297
MboI	GATC	3 cut(s)	49, 61, 295
MboII	GAAGA	2 cut(s)	250, 252
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	4 cut(s)	135, 166, 349, 391
MlyI	GAGTC	2 cut(s)	195, 314
MnlI	CCTC	3 cut(s)	234, 322, 370
MroXI	GAANNNNTTC	1 cut(s)	376
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	1 cut(s)	182
NdeII	GATC	3 cut(s)	49, 61, 295
NlaIII	CATG	3 cut(s)	56, 79, 127
NlaIV	GGNNCC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	2 cut(s)	195, 313
PpsI	GAGTC	2 cut(s)	195, 313
Ppu21I	YACGTR	2 cut(s)	197, 251
PspN4I	GGNNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	57
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	3 cut(s)	49, 61, 295
SchI	GAGTC	2 cut(s)	195, 314
SetI	ASST	9 cut(s)	156, 199, 216, 253, 258, 273, 281, 287, 319
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	4 cut(s)	135, 166, 349, 391
SspMI	CTAG	3 cut(s)	219, 326, 400
TaiI	ACGT	2 cut(s)	199, 253
TaqI	TCGA	4 cut(s)	14, 303, 313, 339
TasI	AATT	4 cut(s)	135, 166, 349, 391
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	252
XapI	RAATTY	3 cut(s)	135, 166, 349
XbaI	TCTAGA	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	3 cut(s)	219, 326, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.