Rmu_sc0003267.1_g000032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003267.1
OG0015898
Physical Location & Seq
Reverse (-)
146469 .. 146792
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003267.1_g000032.1.cds

Sequence Viewer

Length: 324 bp
atgtacctgaaacagagtggtggcaccagagttggtggaaacagaaacatggccagtggaatttgggctttcaggcagctcaatgatacaaattcactctctgcaccggtcagatttctacgcggactcagggctaaggtggcaagggttatctcagcaaggaagaggagttcacgtaaggtgtcttcatctaaccttacaaggtcaaggtctgtatcagatcccatcgagtctcatcgagccgaagcgctagaggactgcatcgagttcttgaattctgcttcgtctctgcagaggactagttcagttacttcaaattgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.75

Weight (kDa)

11.47

Isoelectric Point (pI)

63.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09032 AT5G01225
fragaria_vesca FvH4_6g11920
malus_domestica MD12G1161500.v1.1
prunus_persica Prupe.6G271900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0463681
rosa_laevigata RLG00000024764
rosa_multiflora Rmu_sc0003267.1_g000032
rosa_roxburghii Rroxscaffold_6G00416370
rosa_rugosa Rorug03G0066900
rosa_samantha Rh3AG124000 Rh3BG128600 Rh3CG130800 Rh3DG129200
rosa_wichuraiana Rw3G010480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 3 cut(s) 60, 91, 274
AfaI GTAC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 249
AgeI ACCGGT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 274, 315
AhlI ACTAGT 1 cut(s) 299
AloI GAACNNNNNNTCC 2 cut(s) 154, 186
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 237, 291
AlwI GGATC 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 3 cut(s) 60, 91, 274
AsiGI ACCGGT 1 cut(s) 106
AspLEI GCGC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 53
BanI GGYRCC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 169, 201
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 237, 291
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 2 cut(s) 251, 300
BfmI CTRYAG 1 cut(s) 290
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 176
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 142, 168
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 23
BshTI ACCGGT 1 cut(s) 106
BsiSI CCGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 237, 291
BsmBI CGTCTC 1 cut(s) 291
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 2 cut(s) 141, 167
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 294
BspPI GGATC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 106
BssMI GATC 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 176
BstDEI CTNAG 3 cut(s) 128, 135, 154
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 237, 291
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 290
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 61
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 106
Csp6I GTAC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 106
CviAII CATG 1 cut(s) 49
CviJI RGCY 5 cut(s) 53, 68, 79, 134, 242
CviKI_1 RGCY 5 cut(s) 53, 68, 79, 134, 242
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 128, 135, 154
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco47III AGCGCT 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 1 cut(s) 52
FaiI YATR 1 cut(s) 50
FatI CATG 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 2 cut(s) 251, 300
GlaI GCGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 250
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 2 cut(s) 126, 230
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 113, 220
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 104, 261, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 3 cut(s) 128, 135, 154
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 6 cut(s) 20, 40, 58, 67, 115, 120
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 270
MaeI CTAG 2 cut(s) 251, 300
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 307
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 2 cut(s) 175, 177
MflI RGATCY 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 4 cut(s) 60, 91, 274, 316
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 2 cut(s) 120, 239
MnlI CCTC 3 cut(s) 159, 247, 288
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 25
PinAI ACCGGT 1 cut(s) 106
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 2 cut(s) 120, 238
PpsI GAGTC 2 cut(s) 120, 238
Ppu21I YACGTR 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 25
PstI CTGCAG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 2 cut(s) 120, 239
SetI ASST 8 cut(s) 9, 81, 141, 178, 183, 198, 206, 212
SfaNI GCATC 1 cut(s) 270
SfcI CTRYAG 1 cut(s) 290
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 4 cut(s) 60, 91, 274, 316
SsiI CCGC 1 cut(s) 123
SspMI CTAG 2 cut(s) 251, 300
TaiI ACGT 1 cut(s) 178
TaqI TCGA 3 cut(s) 228, 238, 264
TasI AATT 4 cut(s) 60, 91, 274, 316
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 61
XapI RAATTY 3 cut(s) 60, 91, 274
XspI CTAG 2 cut(s) 251, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.