AT3G09085

Protein of unknown function (DUF962)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016709
Physical Location & Seq
Forward (+)
2782133 .. 2782740
608 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09085.1

Sequence Viewer

Length: 339 bp
ATGAATTTCAGAAGCTTTGAGGAGTTCTGGCCTTTCTACATGATGCAACACTCGAATCCATCGACGCGAAGGTTGCACTTCATAGGTATCATCGCGAGCATCGTTGCTTTGATATGTTCGATTTTGATCAACTGGTGGTTCTTAGCTCTGGTGCCTCTGCTTGGGTACGGATTCGCGTGGTATAGCCACTTCTTCGTGGAAGGGAATGTTCCGGCGAGCTTTGGGCATCCGCTTTGGTCGTTTCTCTGCGATCTCAAGATGTTTAGTCTGATGCTCACAGGAAGCATGGAGAGAGAGATGAAGAGACTTGGTAAGAGGCCATTGTTGCAGCTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF962

Protein Analysis

112

Amino Acids

13.17

Weight (kDa)

9.18

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpo1-like PF06127 3 - 96 1.1e-34 2-hydroxy-palmitic acid dioxygenase Mpo1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016709)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09085
malus_domestica MD04G1146800.v1.1
prunus_persica Prupe.6G270600_v2.0.a1
pyrus_communis pycom04g13260 pycom12g15190
rosa_chinensis RchiOBHm_Chr3g0463891
rosa_laevigata RLG00000024738
rosa_multiflora Rmu_sc0000517.1_g000003
rosa_roxburghii Rroxscaffold_6G00416160
rosa_rugosa Rorug03G0069000
rosa_samantha Rh3BG130000 Rh3CG132500 Rh3DG131200
rosa_wichuraiana Rw3G010630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AccII CGCG 3 cut(s) 67, 95, 176
AciI CCGC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 161
AluBI AGCT 4 cut(s) 15, 146, 219, 331
AluI AGCT 4 cut(s) 15, 146, 219, 331
Alw26I GTCTC 1 cut(s) 298
AoxI GGCC 2 cut(s) 29, 317
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 4
BanI GGYRCC 1 cut(s) 151
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BccI CCATC 1 cut(s) 67
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 298
BisI GCNGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 330
BmiI GGNNCC 1 cut(s) 153
BmsI GCATC 4 cut(s) 33, 108, 235, 261
BpuEI CTTGAG 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 125
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 35
Bsh1236I CGCG 3 cut(s) 67, 95, 176
BshFI GGCC 2 cut(s) 31, 319
BshNI GGYRCC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 298
BsnI GGCC 2 cut(s) 31, 319
Bsp143I GATC 2 cut(s) 126, 250
Bsp68I TCGCGA 1 cut(s) 95
BspACI CCGC 1 cut(s) 230
BspANI GGCC 2 cut(s) 31, 319
BspFNI CGCG 3 cut(s) 67, 95, 176
BspLI GGNNCC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 137
BssMI GATC 2 cut(s) 126, 250
Bst6I CTCTTC 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 97, 217
BstDEI CTNAG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 3 cut(s) 67, 95, 176
BstKTI GATC 2 cut(s) 129, 253
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 2 cut(s) 126, 250
BstMWI GCNNNNNNNGC 2 cut(s) 73, 325
BstUI CGCG 3 cut(s) 67, 95, 176
BsuRI GGCC 2 cut(s) 31, 319
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 226
BtuMI TCGCGA 1 cut(s) 95
Cac8I GCNNGC 2 cut(s) 97, 217
CseI GACGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 40, 286
CviJI RGCY 7 cut(s) 15, 31, 146, 186, 219, 319, 331
CviKI_1 RGCY 7 cut(s) 15, 31, 146, 186, 219, 319, 331
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 128, 252
DpnII GATC 2 cut(s) 126, 250
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
FaeI CATG 2 cut(s) 43, 289
FaiI YATR 5 cut(s) 41, 83, 115, 183, 287
FatI CATG 2 cut(s) 39, 285
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 329
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 329
GluI GCNGC 1 cut(s) 329
HaeIII GGCC 2 cut(s) 31, 319
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 73
Hin1II CATG 2 cut(s) 43, 289
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 55, 171
HpaII CCGG 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 11, 270
Hpy188III TCNNGA 3 cut(s) 94, 256, 336
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 63, 194
HpyCH4V TGCA 3 cut(s) 46, 76, 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 325
HpyF3I CTNAG 1 cut(s) 142
Hsp92II CATG 2 cut(s) 43, 289
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 2 cut(s) 126, 250
LpnPI CCDG 5 cut(s) 13, 118, 134, 225, 264
LweI GCATC 4 cut(s) 33, 108, 235, 261
MalI GATC 2 cut(s) 128, 252
MboI GATC 2 cut(s) 126, 250
MboII GAAGA 2 cut(s) 184, 313
MluCI AATT 1 cut(s) 4
MnlI CCTC 3 cut(s) 13, 165, 309
MspI CCGG 1 cut(s) 212
MvnI CGCG 3 cut(s) 67, 95, 176
MwoI GCNNNNNNNGC 2 cut(s) 73, 325
NdeII GATC 2 cut(s) 126, 250
NlaIII CATG 2 cut(s) 43, 289
NlaIV GGNNCC 1 cut(s) 153
NruI TCGCGA 1 cut(s) 95
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 99
PfeI GAWTC 2 cut(s) 55, 171
PkrI GCNGC 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 153
RruI TCGCGA 1 cut(s) 95
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 2 cut(s) 126, 250
SetI ASST 6 cut(s) 17, 74, 88, 148, 221, 333
SfaNI GCATC 4 cut(s) 33, 108, 235, 261
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 1 cut(s) 4
SsiI CCGC 1 cut(s) 230
TaqI TCGA 3 cut(s) 53, 62, 119
TasI AATT 1 cut(s) 4
TfiI GAWTC 2 cut(s) 55, 171
TseI GCWGC 1 cut(s) 328
TspDTI ATGAA 3 cut(s) 17, 70, 314
TspGWI ACGGA 1 cut(s) 183
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.