pycom12g15190

Protein of unknown function (DUF962)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0016709
Physical Location & Seq
Reverse (-)
17541869 .. 17542207
339 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g15190.1

Sequence Viewer

Length: 339 bp
ATGAATTTCAGGAGCTTGGAGGAGTTCTGGGCCTTCTACATGAACCAGCACTCGAAACCAGCGACGCGGCGGTGGCATTTTGCAGGAACCCTAGCTTCTATCTTCTTCCTCCTCTGCTCGCTGCTGTTCGATTGGCGGTTTCTGCTTTGTGTGCCTCTCTCTGGGTACGGATTGGCGTGGTACAGCCATTTTTTCGTGGAGGGGAATATTCCGGCGACGTTCGGGCATCCGTTTTGGTCCCTTTTCTGCGATTTCAAGATGTTTGCTTTGATGCTTTCGGGTAATATGGACAGAGAGATTAAGAGGCTCGGGAAGAGGCCTGTCTTGCATGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF962

Protein Analysis

113

Amino Acids

13.31

Weight (kDa)

9.26

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpo1-like PF06127 3 - 96 6.4e-32 2-hydroxy-palmitic acid dioxygenase Mpo1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016709)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09085
malus_domestica MD04G1146800.v1.1
prunus_persica Prupe.6G270600_v2.0.a1
pyrus_communis pycom04g13260 pycom12g15190
rosa_chinensis RchiOBHm_Chr3g0463891
rosa_laevigata RLG00000024738
rosa_multiflora Rmu_sc0000517.1_g000003
rosa_roxburghii Rroxscaffold_6G00416160
rosa_rugosa Rorug03G0069000
rosa_samantha Rh3BG130000 Rh3CG132500 Rh3DG131200
rosa_wichuraiana Rw3G010630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 67
AciI CCGC 3 cut(s) 67, 70, 136
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 2 cut(s) 167, 182
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 2 cut(s) 15, 95
AluI AGCT 2 cut(s) 15, 95
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 2 cut(s) 30, 317
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 2 cut(s) 30, 237
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 108
BfaI CTAG 1 cut(s) 92
BisI GCNGC 2 cut(s) 68, 122
BlsI GCNGC 2 cut(s) 69, 123
Bme18I GGWCC 1 cut(s) 237
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 30, 237
BmiI GGNNCC 2 cut(s) 88, 239
BmsI GCATC 2 cut(s) 235, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 161
BseRI GAGGAG 2 cut(s) 35, 101
BseXI GCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 32, 319
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 2 cut(s) 32, 319
BsoBI CYCGRG 1 cut(s) 308
BspACI CCGC 3 cut(s) 67, 70, 136
BspANI GGCC 2 cut(s) 32, 319
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 88, 239
Bst6I CTCTTC 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 4 cut(s) 73, 142, 151, 325
BstNSI RCATGY 1 cut(s) 332
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 108
BsuRI GGCC 2 cut(s) 32, 319
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 30, 237
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 166, 181
CviAII CATG 2 cut(s) 40, 329
CviJI RGCY 6 cut(s) 15, 32, 95, 186, 307, 319
CviKI_1 RGCY 6 cut(s) 15, 32, 95, 186, 307, 319
CviQI GTAC 2 cut(s) 166, 181
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco147I AGGCCT 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 308
FaeI CATG 2 cut(s) 43, 332
FaiI YATR 3 cut(s) 41, 287, 330
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 39, 328
Fnu4HI GCNGC 2 cut(s) 68, 122
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 68, 122
FspBI CTAG 1 cut(s) 92
GluI GCNGC 2 cut(s) 68, 122
HaeIII GGCC 2 cut(s) 32, 319
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 73
Hin1II CATG 2 cut(s) 43, 332
HpaII CCGG 1 cut(s) 212
Hpy188III TCNNGA 3 cut(s) 10, 256, 310
Hpy99I CGWCG 2 cut(s) 67, 220
HpyAV CCTTC 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 83, 328
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 142, 151, 325
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 43, 332
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 7 cut(s) 13, 59, 69, 72, 147, 225, 333
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 2 cut(s) 235, 261
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 218
MboII GAAGA 3 cut(s) 94, 97, 325
MluCI AATT 1 cut(s) 4
MnlI CCTC 7 cut(s) 13, 119, 122, 165, 193, 297, 309
MseI TTAA 1 cut(s) 300
MspI CCGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 4 cut(s) 73, 142, 151, 325
NlaIII CATG 2 cut(s) 43, 332
NlaIV GGNNCC 2 cut(s) 88, 239
NspI RCATGY 1 cut(s) 332
PceI AGGCCT 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PkrI GCNGC 2 cut(s) 69, 123
PspN4I GGNNCC 2 cut(s) 88, 239
PspPI GGNCC 2 cut(s) 30, 237
RsaI GTAC 2 cut(s) 167, 182
RsaNI GTAC 2 cut(s) 166, 181
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 68, 122
Sau96I GGNCC 2 cut(s) 30, 237
SetI ASST 3 cut(s) 17, 97, 221
SfaNI GCATC 2 cut(s) 235, 261
SinI GGWCC 1 cut(s) 237
Sse9I AATT 1 cut(s) 4
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 3 cut(s) 67, 70, 136
SspI AATATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 92
StuI AGGCCT 1 cut(s) 319
TaiI ACGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 53, 129
TasI AATT 1 cut(s) 4
TauI GCSGC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 1 cut(s) 121
TspDTI ATGAA 2 cut(s) 17, 56
TspGWI ACGGA 2 cut(s) 183, 219
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 332
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.