pycom04g13260

Protein of unknown function (DUF962)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0016709
Physical Location & Seq
Reverse (-)
16215045 .. 16215371
327 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13260.1

Sequence Viewer

Length: 327 bp
ATGAAATTCAGGAGCTTGGAGGAGTTCTGGGCCTTCTACATGAGCCAGCACTCGAAGCCATCGACGCGGCGCTGGCATTTTGCAGGAACCCTGGCTTCTCTCTCCTTCCTCCTCTACTCGCTGCTGTTCGATTGGCGGTTTCTGGTTTGTGTGCCTCTCTCTGGGTACGGACTCGCGTGGTACAGCCATTTTTTCGTGGAGGGGAATATTCCGGCGACGTTCGGGCATCCGTTTTGGTCTCTGTTTTGCGACTACAAGATGTTTGCTTTGATGCTTTCTGGTAATATGGACAGAGAGATTAAGAGGCTCGGAAAGAGGCCTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF962

Protein Analysis

109

Amino Acids

12.83

Weight (kDa)

9.51

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpo1-like PF06127 3 - 96 1e-30 2-hydroxy-palmitic acid dioxygenase Mpo1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016709)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09085
malus_domestica MD04G1146800.v1.1
prunus_persica Prupe.6G270600_v2.0.a1
pyrus_communis pycom04g13260 pycom12g15190
rosa_chinensis RchiOBHm_Chr3g0463891
rosa_laevigata RLG00000024738
rosa_multiflora Rmu_sc0000517.1_g000003
rosa_roxburghii Rroxscaffold_6G00416160
rosa_rugosa Rorug03G0069000
rosa_samantha Rh3BG130000 Rh3CG132500 Rh3DG131200
rosa_wichuraiana Rw3G010630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 67, 176
AciI CCGC 2 cut(s) 67, 136
AcsI RAATTY 1 cut(s) 5
AfaI GTAC 2 cut(s) 167, 182
AfiI CCNNNNNNNGG 1 cut(s) 161
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 243
AoxI GGCC 2 cut(s) 30, 317
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 108
BccI CCATC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 325
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 2 cut(s) 68, 122
BlsI GCNGC 2 cut(s) 69, 123
Bme1390I CCNGG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 2 cut(s) 235, 261
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 161
BseRI GAGGAG 2 cut(s) 35, 101
BseXI GCAGC 1 cut(s) 108
Bsh1236I CGCG 2 cut(s) 67, 176
BshFI GGCC 2 cut(s) 32, 319
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 2 cut(s) 32, 319
Bso31I GGTCTC 1 cut(s) 243
BspACI CCGC 2 cut(s) 67, 136
BspANI GGCC 2 cut(s) 32, 319
BspFNI CGCG 2 cut(s) 67, 176
BspLI GGNNCC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 47, 74
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 2 cut(s) 67, 176
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 243
BstMWI GCNNNNNNNGC 3 cut(s) 55, 64, 73
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 2 cut(s) 67, 176
BstV1I GCAGC 1 cut(s) 108
BsuRI GGCC 2 cut(s) 32, 319
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 47, 74
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 30
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 166, 181
CviAII CATG 1 cut(s) 40
CviJI RGCY 8 cut(s) 15, 32, 45, 58, 95, 186, 307, 319
CviKI_1 RGCY 8 cut(s) 15, 32, 45, 58, 95, 186, 307, 319
CviQI GTAC 2 cut(s) 166, 181
Eco147I AGGCCT 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 43
FaiI YATR 2 cut(s) 41, 287
FatI CATG 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 68, 122
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 68, 122
FspBI CTAG 1 cut(s) 325
GlaI GCGC 1 cut(s) 71
GluI GCNGC 2 cut(s) 68, 122
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 2 cut(s) 32, 319
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 171
HpaII CCGG 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 311
Hpy188III TCNNGA 1 cut(s) 10
Hpy99I CGWCG 2 cut(s) 67, 220
HpyAV CCTTC 2 cut(s) 43, 115
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 64, 73
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 12
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 2 cut(s) 235, 261
MaeI CTAG 1 cut(s) 325
MaeII ACGT 1 cut(s) 218
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 165
MnlI CCTC 7 cut(s) 13, 119, 122, 165, 193, 297, 309
MseI TTAA 1 cut(s) 300
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 2 cut(s) 67, 176
MwoI GCNNNNNNNGC 3 cut(s) 55, 64, 73
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 88
PceI AGGCCT 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PkrI GCNGC 2 cut(s) 69, 123
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 30
RsaI GTAC 2 cut(s) 167, 182
RsaNI GTAC 2 cut(s) 166, 181
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 68, 122
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 92
SetI ASST 2 cut(s) 17, 221
SfaNI GCATC 2 cut(s) 235, 261
Sse9I AATT 1 cut(s) 5
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 2 cut(s) 67, 136
SspI AATATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 325
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 221
TaqI TCGA 3 cut(s) 53, 62, 129
TasI AATT 1 cut(s) 5
TauI GCSGC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 183, 219
XapI RAATTY 1 cut(s) 5
XspI CTAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.