Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016709

Physical Location & Seq

Genomic Coordinates Forward (+)

5383747 .. 5385300

Gene Structure 1554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGACAGAGTTTTCCAAATATCCTGAAGAGATGGCCTTGCAAATCTTATCAAGGATGCCACCTACATCTCTGATGCGATTCAAATGTGTCCGTAAGTCATGGTATACATTGATCAACAGTCCCAGCTTCGTATCCAAACACCTCTTTAATTCGTTGCACAACAAACAGTCCACATGCATCTTTTGCAAGCGTTACGTCTTCAGGAATTTCGCCACTAAAGATGTGGAATCTGTAATCTCATTGATCACTTTTTCCTATGATGATGTTGGCGATAGTGACCATGAGCATATCTCTCATTCGGTTATCCAAGACATCGATCTTCCACTTTCTATGAGTGGAGTACCGAAGAACCATGTCAATGAGCCTGAGCTTCTCGGAGCTGTATATATTACAGGGCATTGTGATGGAATCATTTGTTTAGTCCATGGTGAGATTGTGCTATGGAATCCAGCAATTAAGCAATTCAAGATTCTTCCCAAGCCACTCCTTACAAATGGGATCGTAAATTCTATAGGATTTGGCTATGATCCTAGATCTAAAGATTATAAAGTTTTTAGTTTTCCAACTCATGATGAGGACCGAACTAGCGAGCGTGATTTTAATTATCCTCCACAGGTTGAAGTATACAGCCTCAGTACCGACTCGTGGACAGAGATCAACGCCGGTAATTTAGAAACTGAAACTACCAACTTGTATCCTGAATATTTTCAAATGTACTTCAAGGGAATTTGGTATTGGACCGGAAGTGAGCAACAAAAGGAATTCATGGTTGTTTATGATAGTATGGATGAGGAATGGGTGAGGCAGCTGATCATTGTGTTTGATATGAATGATGAAGTATTTGAAGACATACTATTTCCATATAGTTTATACCACCCGATGATTCCTTATTTAGAAATGCGGGTTATTGTGTGGAATGAATCCGTCGCTCTTTTTGGTCAGCACCGTTTTGGTTATGCTGATGATGCTTTCGGATTATGGGTAATGGATGATATTGTCAAGGGTTCCTGGACAAAACAATTAACCCTAGAGGTCATAGTTGGGACTCGGATGATTTTGGAAATGTGGAAGAGCGACGAGATTCTTATGGTGGCTAATGACAACCGTATATTCTCCTACAATTTCGGAACTGAAGAGATTAAATTTCTTCCCATTGAAAGTACGCATCCAACTTTTTCCGCAGCTATTGTATGCATAAACAGTATAGTTCCGGTTATTCATGGGAGGCAACGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF962

Protein Analysis

412

Amino Acids

47.92

Weight (kDa)

5.01

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 44	9.7e-06	F-box domain
FBA_3	PF08268	113 - 343	1.7e-17	F-box associated beta propeller domain
FBA_1	PF07734	129 - 370	7.4e-25	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09085
malus_domestica	MD04G1146800.v1.1
prunus_persica	Prupe.6G270600_v2.0.a1
pyrus_communis	pycom04g13260 pycom12g15190
rosa_chinensis	RchiOBHm_Chr3g0463891
rosa_laevigata	RLG00000024738
rosa_multiflora	Rmu_sc0000517.1_g000003
rosa_roxburghii	Rroxscaffold_6G00416160
rosa_rugosa	Rorug03G0069000
rosa_samantha	Rh3BG130000 Rh3CG132500 Rh3DG131200
rosa_wichuraiana	Rw3G010630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AccI	GTMKAC	2 cut(s)	104, 624
AciI	CCGC	2 cut(s)	901, 1179
AclWI	GGATC	2 cut(s)	506, 521
AcsI	RAATTY	5 cut(s)	205, 505, 726, 761, 1142
AcuI	CTGAAG	3 cut(s)	45, 184, 1152
AfaI	GTAC	4 cut(s)	342, 637, 716, 1162
AfiI	CCNNNNNNNGG	1 cut(s)	645
AgsI	TTSAA	7 cut(s)	82, 466, 620, 710, 721, 845, 1157
AjnI	CCWGG	1 cut(s)	1007
AjuI	GAANNNNNNNTTGG	2 cut(s)	718, 750
AluBI	AGCT	5 cut(s)	126, 370, 380, 808, 1184
AluI	AGCT	5 cut(s)	126, 370, 380, 808, 1184
AlwI	GGATC	2 cut(s)	506, 521
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	805, 1181
ApoI	RAATTY	5 cut(s)	205, 505, 726, 761, 1142
Asp700I	GAANNNNTTC	1 cut(s)	705
AspS9I	GGNCC	2 cut(s)	577, 738
AsuHPI	GGTGA	2 cut(s)	440, 811
AvaII	GGWCC	2 cut(s)	577, 738
BauI	CACGAG	1 cut(s)	643
BbsI	GAAGAC	2 cut(s)	190, 852
BbvI	GCAGC	2 cut(s)	817, 1193
BccI	CCATC	2 cut(s)	25, 398
BciT130I	CCWGG	1 cut(s)	1009
BciVI	GTATCC	2 cut(s)	142, 705
BclI	TGATCA	3 cut(s)	111, 243, 810
BfaI	CTAG	3 cut(s)	531, 585, 1028
BfmI	CTRYAG	1 cut(s)	510
BfuI	GTATCC	2 cut(s)	142, 705
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	2 cut(s)	806, 1182
BlsI	GCNGC	2 cut(s)	807, 1183
Bme1390I	CCNGG	1 cut(s)	1009
Bme18I	GGWCC	2 cut(s)	577, 738
BmgT120I	GGNCC	2 cut(s)	577, 738
BmiI	GGNNCC	1 cut(s)	1006
BmrFI	CCNGG	1 cut(s)	1009
BmsI	GCATC	5 cut(s)	45, 63, 186, 955, 1174
BpiI	GAAGAC	2 cut(s)	190, 852
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
Bpu10I	CCTNAGC	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	2 cut(s)	740, 1210
Bsc4I	CCNNNNNNNGG	1 cut(s)	645
Bse118I	RCCGGY	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	1009
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	5 cut(s)	60, 793, 994, 1056, 1165
BseLI	CCNNNNNNNGG	1 cut(s)	645
BseMII	CTCAG	2 cut(s)	357, 646
BseXI	GCAGC	2 cut(s)	817, 1193
BseYI	CCCAGC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	35
BshVI	ATCGAT	1 cut(s)	315
BsiSI	CCGG	3 cut(s)	663, 741, 1211
BslFI	GGGAC	2 cut(s)	105, 1057
BslI	CCNNNNNNNGG	1 cut(s)	645
BsmFI	GGGAC	2 cut(s)	105, 1057
BsnI	GGCC	1 cut(s)	35
Bsp143I	GATC	8 cut(s)	111, 243, 316, 498, 526, 533, 654, 810
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	2 cut(s)	901, 1179
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	358, 645
BspDI	ATCGAT	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	1006
BspPI	GGATC	2 cut(s)	506, 521
BspQI	GCTCTTC	1 cut(s)	1064
BsrFI	RCCGGY	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	8 cut(s)	111, 243, 316, 498, 526, 533, 654, 810
BssNAI	GTATAC	2 cut(s)	105, 625
BssSI	CACGAG	1 cut(s)	643
BssT1I	CCWWGG	1 cut(s)	424
Bst1107I	GTATAC	2 cut(s)	105, 625
Bst2BI	CACGAG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	1009
Bst4CI	ACNGT	5 cut(s)	119, 168, 947, 1106, 1202
Bst6I	CTCTTC	3 cut(s)	21, 1064, 1128
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	188, 590
BstDEI	CTNAG	2 cut(s)	366, 632
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	5 cut(s)	60, 793, 994, 1056, 1165
BstKTI	GATC	8 cut(s)	114, 246, 319, 501, 529, 536, 657, 813
BstMBI	GATC	8 cut(s)	111, 243, 316, 498, 526, 533, 654, 810
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 965
BstNI	CCWGG	1 cut(s)	1009
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	1007
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	817, 1193
BstV2I	GAAGAC	2 cut(s)	190, 852
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BstZ17I	GTATAC	2 cut(s)	105, 625
Bsu15I	ATCGAT	1 cut(s)	315
BsuI	GTATCC	2 cut(s)	142, 705
BsuRI	GGCC	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	5 cut(s)	60, 793, 994, 1056, 1165
Cac8I	GCNNGC	2 cut(s)	188, 590
CciI	TCATGA	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	2 cut(s)	577, 738
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	4 cut(s)	341, 636, 715, 1161
CviAII	CATG	8 cut(s)	99, 174, 281, 353, 425, 569, 766, 1220
CviQI	GTAC	4 cut(s)	341, 636, 715, 1161
DdeI	CTNAG	2 cut(s)	366, 632
DpnI	GATC	8 cut(s)	113, 245, 318, 500, 528, 535, 656, 812
DpnII	GATC	8 cut(s)	111, 243, 316, 498, 526, 533, 654, 810
Eam1104I	CTCTTC	3 cut(s)	21, 1064, 1128
EarI	CTCTTC	3 cut(s)	21, 1064, 1128
Eco130I	CCWWGG	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	577, 738
Eco57I	CTGAAG	3 cut(s)	45, 184, 1152
EcoRI	GAATTC	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	1007
EcoT14I	CCWWGG	1 cut(s)	424
EcoT22I	ATGCAT	2 cut(s)	179, 1196
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	8 cut(s)	102, 177, 284, 356, 428, 572, 769, 1223
FaqI	GGGAC	2 cut(s)	105, 1057
FatI	CATG	8 cut(s)	98, 173, 280, 352, 424, 568, 765, 1219
FauI	CCCGC	1 cut(s)	894
FbaI	TGATCA	3 cut(s)	111, 243, 810
FblI	GTMKAC	2 cut(s)	104, 624
Fnu4HI	GCNGC	2 cut(s)	806, 1182
FokI	GGATG	5 cut(s)	67, 800, 1001, 1063, 1152
Fsp4HI	GCNGC	2 cut(s)	806, 1182
FspBI	CTAG	3 cut(s)	531, 585, 1028
GluI	GCNGC	2 cut(s)	806, 1182
GsaI	CCCAGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	3 cut(s)	663, 741, 1211
Hin1II	CATG	8 cut(s)	102, 177, 284, 356, 428, 572, 769, 1223
HpaII	CCGG	3 cut(s)	663, 741, 1211
HphI	GGTGA	2 cut(s)	440, 811
Hpy166II	GTNNAC	4 cut(s)	105, 171, 625, 648
Hpy188I	TCNGA	5 cut(s)	72, 377, 974, 1050, 1127
Hpy188III	TCNNGA	5 cut(s)	23, 202, 466, 569, 698
Hpy8I	GTNNAC	4 cut(s)	105, 171, 625, 648
Hpy99I	CGWCG	2 cut(s)	929, 1079
HpyCH4III	ACNGT	5 cut(s)	119, 168, 947, 1106, 1202
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	40, 157, 177, 186, 1194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 965
HpyF3I	CTNAG	2 cut(s)	366, 632
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	8 cut(s)	102, 177, 284, 356, 428, 572, 769, 1223
Ksp22I	TGATCA	3 cut(s)	111, 243, 810
Kzo9I	GATC	8 cut(s)	111, 243, 316, 498, 526, 533, 654, 810
LguI	GCTCTTC	1 cut(s)	1064
LmnI	GCTCC	1 cut(s)	377
Lsp1109I	GCAGC	2 cut(s)	817, 1193
LweI	GCATC	5 cut(s)	45, 63, 186, 955, 1174
MaeI	CTAG	3 cut(s)	531, 585, 1028
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	191, 275
MalI	GATC	8 cut(s)	113, 245, 318, 500, 528, 535, 656, 812
MboI	GATC	8 cut(s)	111, 243, 316, 498, 526, 533, 654, 810
MboII	GAAGA	9 cut(s)	38, 190, 311, 358, 464, 857, 1081, 1139, 1145
MflI	RGATCY	1 cut(s)	533
MlyI	GAGTC	2 cut(s)	635, 1039
MmeI	TCCRAC	2 cut(s)	587, 1193
MnlI	CCTC	8 cut(s)	152, 568, 618, 641, 784, 795, 1024, 1218
Mph1103I	ATGCAT	2 cut(s)	179, 1196
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	5 cut(s)	147, 456, 600, 1022, 1140
MslI	CAYNNNNRTG	2 cut(s)	357, 402
MspA1I	CMGCKG	1 cut(s)	808
MspI	CCGG	3 cut(s)	663, 741, 1211
MspR9I	CCNGG	1 cut(s)	1009
MvaI	CCWGG	1 cut(s)	1009
MwoI	GCNNNNNNNGC	2 cut(s)	183, 965
NcoI	CCATGG	1 cut(s)	424
NdeII	GATC	8 cut(s)	111, 243, 316, 498, 526, 533, 654, 810
NlaIII	CATG	8 cut(s)	102, 177, 284, 356, 428, 572, 769, 1223
NlaIV	GGNNCC	1 cut(s)	1006
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	2 cut(s)	179, 1196
NspI	RCATGY	1 cut(s)	177
PagI	TCATGA	1 cut(s)	568
PciSI	GCTCTTC	1 cut(s)	1064
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	8 cut(s)	78, 227, 408, 445, 469, 883, 920, 1081
PfoI	TCCNGGA	1 cut(s)	1007
PkrI	GCNGC	2 cut(s)	807, 1183
PleI	GAGTC	2 cut(s)	635, 1039
PpsI	GAGTC	2 cut(s)	635, 1039
PsiI	TTATAA	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	1007
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	1007
PspN4I	GGNNCC	1 cut(s)	1006
PspPI	GGNCC	2 cut(s)	577, 738
PsuI	RGATCY	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	808
RsaI	GTAC	4 cut(s)	342, 637, 716, 1162
RsaNI	GTAC	4 cut(s)	341, 636, 715, 1161
RseI	CAYNNNNRTG	2 cut(s)	357, 402
SapI	GCTCTTC	1 cut(s)	1064
SaqAI	TTAA	5 cut(s)	147, 456, 600, 1022, 1140
SatI	GCNGC	2 cut(s)	806, 1182
Sau3AI	GATC	8 cut(s)	111, 243, 316, 498, 526, 533, 654, 810
Sau96I	GGNCC	2 cut(s)	577, 738
SchI	GAGTC	2 cut(s)	635, 1039
ScrFI	CCNGG	1 cut(s)	1009
SfaNI	GCATC	5 cut(s)	45, 63, 186, 955, 1174
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	577, 738
SmiMI	CAYNNNNRTG	2 cut(s)	357, 402
SsiI	CCGC	2 cut(s)	901, 1179
SspI	AATATT	1 cut(s)	704
SspMI	CTAG	3 cut(s)	531, 585, 1028
StyD4I	CCNGG	1 cut(s)	1007
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	5 cut(s)	119, 168, 947, 1106, 1202
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	315
TaqII	GACCGA	1 cut(s)	594
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	8 cut(s)	78, 227, 408, 445, 469, 883, 920, 1081
Tru1I	TTAA	5 cut(s)	147, 456, 600, 1022, 1140
Tru9I	TTAA	5 cut(s)	147, 456, 600, 1022, 1140
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	805, 1181
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	5 cut(s)	754, 842, 849, 933, 1208
TspGWI	ACGGA	2 cut(s)	80, 913
VpaK11BI	GGWCC	2 cut(s)	577, 738
XapI	RAATTY	5 cut(s)	205, 505, 726, 761, 1142
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmiI	GTMKAC	2 cut(s)	104, 624
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	3 cut(s)	531, 585, 1028
Zsp2I	ATGCAT	2 cut(s)	179, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.