AT3G09310

Haemolytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015936
Physical Location & Seq
Reverse (-)
2860402 .. 2861359
958 bp
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UTR
Exon/CDS
Intron
AT3G09310.1

Sequence Viewer

Length: 513 bp
ATGGCGGTCGTCATCTCCATCCATCGTCCTTATGTAACCCTCACAATCTCTAAAAATCGTAATCCTCTTAAACCTCACCGACAATTCAACGAATCCTGCCTGAGGTTTGATCATCTTCCTCGGAACACCAAAAATCAGCTCCGTTGCTTATCTGCGAAATCGACGCCATCGAAACCAGACCCTGCATCCCCTCAAGATGGGGAAGAGCTGGAGAGTGTGGGAGTCAAAGCAGCTTTAGCAATGCTGAGATTCTACAAGAGAGAGATATCGCCGGTGTTACCTAGAAGCTGCCGTTACGTTCCGACTTGCAGTGAATACTCAATGGAAGCTTACAAGAAATATGGAGTTCTTAAAGGCACTGTTCTCACAACTTGGCGTCTCTGTCGCTGCAATCCTCTTGGTGGATCTGGGTTCGATCCTCCAAGATGGTTTGGTGAGAGTGGGATCAAGCTCCGAGAAGGAGACGAAGAAGAAGAAGATAACTATGACGACGAAGATCAAAGAAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Haemolytic

Protein Analysis

170

Amino Acids

19.45

Weight (kDa)

8.72

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YidD PF01809 77 - 140 1.2e-26 Putative membrane protein insertion efficiency factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09310
fragaria_vesca FvH4_6g13510 FvH4_6g13510
malus_domestica MD12G1143600.v1.1
prunus_persica Prupe.6G257100_v2.0.a1
pyrus_communis pycom12g13830
rosa_chinensis RchiOBHm_Chr3g0466381
rosa_laevigata RLG00000024579
rosa_multiflora Rmu_sc0003480.1_g000004
rosa_roxburghii Rroxscaffold_6G00414520
rosa_rugosa Rorug03G0081400
rosa_samantha Rh3AG127900 Rh3BG149200 Rh3DG149900
rosa_wichuraiana Rw3G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 3 cut(s) 410, 412, 452
AcyI GRCGYC 2 cut(s) 164, 376
AfiI CCNNNNNNNGG 3 cut(s) 102, 197, 401
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 6 cut(s) 139, 208, 233, 288, 329, 451
AluI AGCT 6 cut(s) 139, 208, 233, 288, 329, 451
Alw26I GTCTC 2 cut(s) 383, 456
AlwI GGATC 3 cut(s) 410, 412, 452
AlwNI CAGNNNCTG 1 cut(s) 182
ApeKI GCWGC 3 cut(s) 230, 288, 387
AsuHPI GGTGA 2 cut(s) 68, 446
AxyI CCTNAGG 1 cut(s) 101
BbvI GCAGC 3 cut(s) 242, 275, 374
BccI CCATC 5 cut(s) 26, 30, 175, 191, 420
BceAI ACGGC 1 cut(s) 276
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 383, 456
BfaI CTAG 1 cut(s) 282
BisI GCNGC 3 cut(s) 231, 289, 388
BlsI GCNGC 3 cut(s) 232, 290, 389
BmsI GCATC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 177
BsaHI GRCGYC 2 cut(s) 164, 376
BsaJI CCNNGG 1 cut(s) 119
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 197, 401
Bse118I RCCGGY 1 cut(s) 271
Bse21I CCTNAGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 119
BseGI GGATG 2 cut(s) 18, 185
BseLI CCNNNNNNNGG 3 cut(s) 102, 197, 401
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 92, 236
BseXI GCAGC 3 cut(s) 242, 275, 374
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 3 cut(s) 102, 197, 401
BsmAI GTCTC 2 cut(s) 383, 456
BsmBI CGTCTC 2 cut(s) 383, 456
Bsp143I GATC 5 cut(s) 109, 404, 415, 444, 496
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 93, 237
BspPI GGATC 3 cut(s) 410, 412, 452
BspQI GCTCTTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 5 cut(s) 109, 404, 415, 444, 496
BssNI GRCGYC 2 cut(s) 164, 376
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 2 cut(s) 164, 376
BstDEI CTNAG 2 cut(s) 101, 245
BstENI CCTNNNNNAGG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 18, 185
BstKTI GATC 5 cut(s) 112, 407, 418, 447, 499
BstMAI GTCTC 2 cut(s) 383, 456
BstMBI GATC 5 cut(s) 109, 404, 415, 444, 496
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstV1I GCAGC 3 cut(s) 242, 275, 374
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
Bsu36I CCTNAGG 1 cut(s) 101
BtsCI GGATG 2 cut(s) 18, 185
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 316, 357
CaiI CAGNNNCTG 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 271
CseI GACGC 2 cut(s) 172, 365
CviJI RGCY 6 cut(s) 139, 208, 233, 288, 329, 451
CviKI_1 RGCY 6 cut(s) 139, 208, 233, 288, 329, 451
DdeI CTNAG 2 cut(s) 101, 245
DpnI GATC 5 cut(s) 111, 406, 417, 446, 498
DpnII GATC 5 cut(s) 109, 404, 415, 444, 496
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco32I GATATC 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 101
EcoNI CCTNNNNNAGG 1 cut(s) 100
EcoRV GATATC 1 cut(s) 267
Esp3I CGTCTC 2 cut(s) 383, 456
FaiI YATR 3 cut(s) 33, 342, 486
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 231, 289, 388
FokI GGATG 2 cut(s) 5, 172
Fsp4HI GCNGC 3 cut(s) 231, 289, 388
FspBI CTAG 1 cut(s) 282
GluI GCNGC 3 cut(s) 231, 289, 388
GsuI CTGGAG 1 cut(s) 230
HapII CCGG 1 cut(s) 272
HgaI GACGC 2 cut(s) 172, 365
Hin1I GRCGYC 2 cut(s) 164, 376
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 3 cut(s) 92, 222, 249
HpaII CCGG 1 cut(s) 272
HphI GGTGA 2 cut(s) 68, 446
Hpy188I TCNGA 3 cut(s) 123, 303, 455
Hpy188III TCNNGA 1 cut(s) 194
Hpy99I CGWCG 2 cut(s) 166, 494
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 185, 309, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 101, 245
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 2 cut(s) 164, 376
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 5 cut(s) 109, 404, 415, 444, 496
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 144, 456
LpnPI CCDG 7 cut(s) 109, 113, 189, 194, 195, 285, 393
Lsp1109I GCAGC 3 cut(s) 242, 275, 374
LweI GCATC 1 cut(s) 194
MaeI CTAG 1 cut(s) 282
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 34, 276, 293
MalI GATC 5 cut(s) 111, 406, 417, 446, 498
MboI GATC 5 cut(s) 109, 404, 415, 444, 496
MboII GAAGA 7 cut(s) 107, 215, 479, 482, 485, 488, 506
MflI RGATCY 1 cut(s) 404
MluCI AATT 1 cut(s) 83
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 8 cut(s) 50, 75, 84, 96, 129, 201, 405, 429
MseI TTAA 2 cut(s) 69, 351
MspI CCGG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 5 cut(s) 109, 404, 415, 444, 496
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PfeI GAWTC 2 cut(s) 92, 249
PkrI GCNGC 3 cut(s) 232, 290, 389
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 404
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 69, 351
SatI GCNGC 3 cut(s) 231, 289, 388
Sau3AI GATC 5 cut(s) 109, 404, 415, 444, 496
SchI GAGTC 1 cut(s) 231
SfaNI GCATC 1 cut(s) 194
SgrAI CRCCGGYG 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 300
TaqI TCGA 3 cut(s) 161, 170, 414
TasI AATT 1 cut(s) 83
TfiI GAWTC 2 cut(s) 92, 249
Tru1I TTAA 2 cut(s) 69, 351
Tru9I TTAA 2 cut(s) 69, 351
TscAI CASTG 2 cut(s) 316, 364
TseI GCWGC 3 cut(s) 230, 288, 387
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 2 cut(s) 316, 364
XagI CCTNNNNNAGG 1 cut(s) 100
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.