RLG00000024579

UPF0161 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015936
Physical Location & Seq
Reverse (-)
37214373 .. 37215290
918 bp
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UTR
Exon/CDS
Intron
RLM00000024579

Sequence Viewer

Length: 438 bp
ATGGCGGTTGTTAACTACCATCAACCTCTGGGTTTAGCTGTTCAGCCCCAATCCCAAAACCCTAACTTCAATTCCCGCAAAATTTACCGAACCCAACTCAATACCTTGAATTCTCGACGGCGCCGAGTAATCAATTGCTTGAATGGAGACTCAGACTCCGACCCAAACAGTCCACAAGATAAGGAAGTGAACAGTTTGGGAGTCAAAGCCGCGTTGTCGATGCTCAAATTCTACAAAAGGGAGATTTCGCCTTTGATGCCGAAAAGTTGCCGGTACGTTCCGACTTGCAGTGAGTACTCCATGGAAGCTTACAAGAGATATGGGGTTGCAAAAGGTACAGTCTTGACTGCTTGGCGTCTCTGCCGCTGCAATCCCCTAGGTGGTTCTGGTTATGATCCTCCTCGATGGTTCAATGAGACAAATATGCCTGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Haemolytic

Protein Analysis

146

Amino Acids

16.52

Weight (kDa)

9.42

Isoelectric Point (pI)

65.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YidD PF01809 70 - 133 8.9e-27 Putative membrane protein insertion efficiency factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09310
fragaria_vesca FvH4_6g13510 FvH4_6g13510
malus_domestica MD12G1143600.v1.1
prunus_persica Prupe.6G257100_v2.0.a1
pyrus_communis pycom12g13830
rosa_chinensis RchiOBHm_Chr3g0466381
rosa_laevigata RLG00000024579
rosa_multiflora Rmu_sc0003480.1_g000004
rosa_roxburghii Rroxscaffold_6G00414520
rosa_rugosa Rorug03G0081400
rosa_samantha Rh3AG127900 Rh3BG149200 Rh3DG149900
rosa_wichuraiana Rw3G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 120
AccII CGCG 1 cut(s) 212
AciI CCGC 4 cut(s) 5, 76, 210, 364
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 3 cut(s) 81, 109, 227
AcyI GRCGYC 2 cut(s) 121, 355
AfaI GTAC 3 cut(s) 275, 296, 337
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 4 cut(s) 70, 109, 142, 412
AluBI AGCT 2 cut(s) 38, 308
AluI AGCT 2 cut(s) 38, 308
Alw26I GTCTC 3 cut(s) 141, 362, 410
AlwI GGATC 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 3 cut(s) 81, 109, 227
AspA2I CCTAGG 1 cut(s) 376
AspLEI GCGC 1 cut(s) 123
AvrII CCTAGG 1 cut(s) 376
BanI GGYRCC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 353
BccI CCATC 2 cut(s) 27, 399
BceAI ACGGC 1 cut(s) 134
BcoDI GTCTC 3 cut(s) 141, 362, 410
BfaI CTAG 1 cut(s) 377
BfoI RGCGCY 1 cut(s) 124
BisI GCNGC 3 cut(s) 210, 364, 367
BlnI CCTAGG 1 cut(s) 376
BlsI GCNGC 3 cut(s) 211, 365, 368
BmcAI AGTACT 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 122
BmsI GCATC 2 cut(s) 210, 246
BsaHI GRCGYC 2 cut(s) 121, 355
BsaJI CCNNGG 2 cut(s) 300, 376
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 300, 376
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 3 cut(s) 141, 362, 410
BsmBI CGTCTC 1 cut(s) 362
Bsp143I GATC 1 cut(s) 394
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 4 cut(s) 5, 76, 210, 364
BspCNI CTCAG 1 cut(s) 164
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 1 cut(s) 389
BspT107I GGYRCC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 270
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 300, 376
BssMI GATC 1 cut(s) 394
BssNI GRCGYC 2 cut(s) 121, 355
BssT1I CCWWGG 2 cut(s) 300, 376
Bst4CI ACNGT 3 cut(s) 170, 194, 340
BstACI GRCGYC 2 cut(s) 121, 355
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 3 cut(s) 141, 362, 410
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 295
CfoI GCGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 270
CseI GACGC 1 cut(s) 344
Csp6I GTAC 3 cut(s) 274, 295, 336
CviAII CATG 1 cut(s) 301
CviJI RGCY 4 cut(s) 38, 46, 209, 308
CviKI_1 RGCY 4 cut(s) 38, 46, 209, 308
CviQI GTAC 3 cut(s) 274, 295, 336
DdeI CTNAG 1 cut(s) 151
DinI GGCGCC 1 cut(s) 122
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eco130I CCWWGG 2 cut(s) 300, 376
EcoRI GAATTC 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 300, 376
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
ErhI CCWWGG 2 cut(s) 300, 376
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 1 cut(s) 304
FaiI YATR 4 cut(s) 302, 321, 393, 425
FatI CATG 1 cut(s) 300
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 210, 364, 367
Fsp4HI GCNGC 3 cut(s) 210, 364, 367
FspBI CTAG 1 cut(s) 377
GlaI GCGC 1 cut(s) 122
GluI GCNGC 3 cut(s) 210, 364, 367
HaeII RGCGCY 1 cut(s) 124
HapII CCGG 1 cut(s) 271
HgaI GACGC 1 cut(s) 344
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 2 cut(s) 121, 355
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 3 cut(s) 149, 155, 201
HpaI GTTAAC 1 cut(s) 13
HpaII CCGG 1 cut(s) 271
Hpy166II GTNNAC 3 cut(s) 13, 173, 190
Hpy188I TCNGA 3 cut(s) 154, 160, 282
Hpy188III TCNNGA 2 cut(s) 114, 343
Hpy8I GTNNAC 3 cut(s) 13, 173, 190
Hpy99I CGWCG 1 cut(s) 120
HpyCH4III ACNGT 3 cut(s) 170, 194, 340
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 288, 329, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 2 cut(s) 121, 355
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 1 cut(s) 121
KasI GGCGCC 1 cut(s) 120
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 394
LpnPI CCDG 3 cut(s) 14, 284, 372
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 2 cut(s) 210, 246
MaeI CTAG 1 cut(s) 377
MaeII ACGT 1 cut(s) 276
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MfeI CAATTG 1 cut(s) 133
MluCI AATT 5 cut(s) 70, 81, 109, 133, 227
Mly113I GGCGCC 1 cut(s) 121
MlyI GAGTC 3 cut(s) 143, 149, 210
MmeI TCCRAC 2 cut(s) 183, 305
MnlI CCTC 3 cut(s) 36, 408, 411
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 1 cut(s) 271
MunI CAATTG 1 cut(s) 133
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 256
NarI GGCGCC 1 cut(s) 121
NcoI CCATGG 1 cut(s) 300
NdeII GATC 1 cut(s) 394
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PkrI GCNGC 3 cut(s) 211, 365, 368
PleI GAGTC 3 cut(s) 143, 149, 209
PluTI GGCGCC 1 cut(s) 124
PpsI GAGTC 3 cut(s) 143, 149, 209
PspN4I GGNNCC 1 cut(s) 122
RsaI GTAC 3 cut(s) 275, 296, 337
RsaNI GTAC 3 cut(s) 274, 295, 336
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 3 cut(s) 210, 364, 367
Sau3AI GATC 1 cut(s) 394
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 3 cut(s) 143, 149, 210
SetI ASST 7 cut(s) 28, 40, 107, 279, 310, 337, 382
SfaNI GCATC 2 cut(s) 210, 246
SfoI GGCGCC 1 cut(s) 122
Sse9I AATT 5 cut(s) 70, 81, 109, 133, 227
SsiI CCGC 4 cut(s) 5, 76, 210, 364
SspDI GGCGCC 1 cut(s) 120
SspMI CTAG 1 cut(s) 377
StyI CCWWGG 2 cut(s) 300, 376
TaaI ACNGT 3 cut(s) 170, 194, 340
TaiI ACGT 1 cut(s) 279
TaqI TCGA 3 cut(s) 115, 218, 403
TasI AATT 5 cut(s) 70, 81, 109, 133, 227
TatI WGTACW 1 cut(s) 294
TauI GCSGC 2 cut(s) 212, 366
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 366
TspRI CASTG 1 cut(s) 295
XapI RAATTY 3 cut(s) 81, 109, 227
XmaJI CCTAGG 1 cut(s) 376
XspI CTAG 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.