Prupe.6G257100_v2.0.a1

UPF0161 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015936
Physical Location & Seq
Reverse (-)
24968041 .. 24969904
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G257100.1

Sequence Viewer

Length: 450 bp
ATGGCGGTTGTTATGTTGGTTAACTACCATAAACCTCTGGCTATAACTGTCCAATCTCAATCGCAAAACCCTAGCTTCAATTCCCGCAAAATTAACCCCAATCAATCCCATGCCTGGAGGGCTCGCCGTCGCCCCATAATCAATGGACTGAATGGAGACACAGAATCCGACCCGACCAATCCACAAGATAAGGAAGTGGACAATTTGGGAGTTAAAGCTGCATTATGTGTGCTCAAATTCTACAAAAGGGAAATCTCACCTCTCTTACTGAATAGTTGCCGGTATGTCCCAACCTGCAGTGAGTACTCAATGCAAGCTTACAAGAAATATGGATTTGCAAAAGGTTCAGTCTTGACAGCTTGGCGAATCTGTCGTTGTAATCCCCTTGGTGGCACTGGATATGATCCTCCACGATGGTTCGAAGAGACAAGTTTGCCTGAAGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Haemolytic

Protein Analysis

150

Amino Acids

16.91

Weight (kDa)

9.01

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09310
fragaria_vesca FvH4_6g13510 FvH4_6g13510
malus_domestica MD12G1143600.v1.1
prunus_persica Prupe.6G257100_v2.0.a1
pyrus_communis pycom12g13830
rosa_chinensis RchiOBHm_Chr3g0466381
rosa_laevigata RLG00000024579
rosa_multiflora Rmu_sc0003480.1_g000004
rosa_roxburghii Rroxscaffold_6G00414520
rosa_rugosa Rorug03G0081400
rosa_samantha Rh3AG127900 Rh3BG149200 Rh3DG149900
rosa_wichuraiana Rw3G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 302
AciI CCGC 2 cut(s) 5, 85
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 114, 389
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 4 cut(s) 75, 218, 317, 359
AluI AGCT 4 cut(s) 75, 218, 317, 359
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 2 cut(s) 150, 419
AlwI GGATC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 249
AsuII TTCGAA 1 cut(s) 420
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 408
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 150, 419
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 136
Bpu14I TTCGAA 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 385
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 389
Bse118I RCCGGY 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 385
BseLI CCNNNNNNNGG 2 cut(s) 114, 389
BseNI ACTGG 1 cut(s) 400
BseXI GCAGC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 114, 389
BsmAI GTCTC 2 cut(s) 150, 419
BsmFI GGGAC 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 420
Bsp1286I GDGCHC 2 cut(s) 124, 234
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 2 cut(s) 5, 85
BspMAI CTGCAG 1 cut(s) 299
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 1 cut(s) 398
BspT104I TTCGAA 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 279
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 1 cut(s) 403
BssT1I CCWWGG 1 cut(s) 385
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 417
BstBI TTCGAA 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 124, 315
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 2 cut(s) 150, 419
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 304, 393
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 124, 315
Cfr10I RCCGGY 1 cut(s) 279
Csp6I GTAC 1 cut(s) 304
CviAII CATG 1 cut(s) 110
CviJI RGCY 6 cut(s) 41, 75, 122, 218, 317, 359
CviKI_1 RGCY 6 cut(s) 41, 75, 122, 218, 317, 359
CviQI GTAC 1 cut(s) 304
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 1 cut(s) 113
FaiI YATR 9 cut(s) 14, 30, 44, 111, 137, 226, 285, 330, 402
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 109
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 72
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 136
HapII CCGG 1 cut(s) 280
Hin1II CATG 1 cut(s) 113
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 2 cut(s) 164, 366
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 1 cut(s) 280
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 2 cut(s) 22, 199
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 2 cut(s) 22, 199
Hpy99I CGWCG 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 4 cut(s) 221, 297, 313, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
Hsp92II CATG 1 cut(s) 113
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 403
LpnPI CCDG 6 cut(s) 23, 100, 127, 293, 307, 381
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 1 cut(s) 72
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 1 cut(s) 434
MhlI GDGCHC 2 cut(s) 124, 234
MluCI AATT 4 cut(s) 79, 90, 202, 236
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 4 cut(s) 45, 111, 270, 417
MseI TTAA 3 cut(s) 21, 93, 213
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 1 cut(s) 403
NlaIII CATG 1 cut(s) 113
NspV TTCGAA 1 cut(s) 420
PfeI GAWTC 2 cut(s) 164, 366
PkrI GCNGC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PstI CTGCAG 1 cut(s) 299
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SaqAI TTAA 3 cut(s) 21, 93, 213
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 403
ScaI AGTACT 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 2 cut(s) 124, 234
SetI ASST 8 cut(s) 37, 77, 220, 262, 296, 319, 346, 361
SfcI CTRYAG 1 cut(s) 295
SfuI TTCGAA 1 cut(s) 420
Sse9I AATT 4 cut(s) 79, 90, 202, 236
SsiI CCGC 2 cut(s) 5, 85
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 420
TasI AATT 4 cut(s) 79, 90, 202, 236
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 2 cut(s) 164, 366
Tru1I TTAA 3 cut(s) 21, 93, 213
Tru9I TTAA 3 cut(s) 21, 93, 213
TscAI CASTG 2 cut(s) 304, 400
TseI GCWGC 1 cut(s) 218
TspRI CASTG 2 cut(s) 304, 400
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.