Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002750

Physical Location & Seq

Genomic Coordinates Forward (+)

6356347 .. 6359174

Gene Structure 2828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0081400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGTTCCGAAGGTCCTGCAACAATAACAATTCATGTGACGGGTTTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACTGAGACAATTGTCAGTAATCTCACCGATTATGTGAAGAAGAATGGTTCACCAAAAGGTCTGGTTATTGGAAGTTGCAGCATTCTTGAGACTGCAGGACAAGGAGCACTTCTTCCCCTATACCAGACATTGCGATCTGCAATAAGCGAGAAGGACTCTACAAATTCCAGCAGAATTATTTGGGTACACTTTGGAGTTAATAGTGGTGCAACTAAGTTTGCCATTGAGCATCAAGCTGTCAATGAAGCTACTTTTCGTTGCCCTGATGAGATGGGATGGAAGCCTCAGAAAGTCCCTATCATTCCTTCAGATGGTGGAATTTCATATACAAGAGAGACTTCTCTACCAGTTGAGGAGATAACCAAGGCCTTGGCAAAGAAGGGTTATGAGGTGATGACCTCGGATGATGCAGGGCGCTTTGTATGCAATTATGTCTACTATCATTCCCTTCGGTTTGCAGAGCAAAATGGGATCAAATCTCTCTTTGTGCACGTGCCTCTCTTCTTGACTATAGATGAGGACACCCAAATGAAATTTGCTGCATCCTTGCTAGAGGTACTTACATCATCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

217

Amino Acids

23.71

Weight (kDa)

6.07

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C15	PF01470	11 - 194	1.6e-18	Pyroglutamyl peptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37650 AT2G37650
fragaria_vesca	FvH4_6g13520 FvH4_6g13520 FvH4_6g13520 FvH4_7g22720 FvH4_7g22720 FvH4_7g22720 FvH4_7g22720
malus_domestica	MD04G1130400.v1.1 MD12G1143500.v1.1
prunus_persica	Prupe.2G237300_v2.0.a1 Prupe.6G257000_v2.0.a1 Prupe.6G257000_v2.0.a1 Prupe.6G257000_v2.0.a1 Prupe.6G257000_v2.0.a1
pyrus_communis	pycom04g11860 pycom12g13820
rosa_chinensis	RchiOBHm_Chr1g0367811 RchiOBHm_Chr3g0466391
rosa_laevigata	RLG00000024578 RLG00000027261
rosa_multiflora	Rmu_sc0001791.1_g000005 Rmu_sc0003480.1_g000003 Rmu_sc0010008.1_g000006
rosa_roxburghii	Rroxscaffold_4G00289190 Rroxscaffold_6G00414510
rosa_rugosa	Rorug01G0336900 Rorug01G0337000 Rorug03G0081400
rosa_samantha	Rh1AG344000 Rh1BG306000 Rh1CG321500 Rh1DG338200 Rh3AG128000 Rh3BG149300 Rh3DG150000
rosa_wichuraiana	Rw1G030620 Rw3G012090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	513
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	4 cut(s)	53, 241, 396, 611
AcuI	CTGAAG	1 cut(s)	369
AcvI	CACGTG	1 cut(s)	571
AfaI	GTAC	2 cut(s)	264, 636
AfiI	CCNNNNNNNGG	1 cut(s)	389
AluBI	AGCT	2 cut(s)	314, 326
AluI	AGCT	2 cut(s)	314, 326
Alw21I	GWGCWC	2 cut(s)	187, 570
Alw26I	GTCTC	3 cut(s)	77, 161, 407
Alw44I	GTGCAC	1 cut(s)	566
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	1 cut(s)	444
ApaLI	GTGCAC	1 cut(s)	566
ApeKI	GCWGC	2 cut(s)	156, 617
ApoI	RAATTY	4 cut(s)	53, 241, 396, 611
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	94, 120, 481
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	570
BbrPI	CACGTG	1 cut(s)	571
Bbv12I	GWGCWC	2 cut(s)	187, 570
BbvI	GCAGC	2 cut(s)	168, 604
BccI	CCATC	3 cut(s)	343, 348, 383
BcgI	CGANNNNNNTGC	1 cut(s)	33
BcoDI	GTCTC	3 cut(s)	77, 161, 407
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	2 cut(s)	171, 588
BfoI	RGCGCY	1 cut(s)	496
BisI	GCNGC	2 cut(s)	157, 618
BlsI	GCNGC	2 cut(s)	158, 619
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	3 cut(s)	316, 475, 629
BoxI	GACNNNNGTC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpuEI	CTTGAG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	571
BsaJI	CCNNGG	4 cut(s)	58, 441, 447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	206
BseDI	CCNNGG	4 cut(s)	58, 441, 447, 477
BseGI	GGATG	3 cut(s)	359, 487, 620
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	72, 377
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	2 cut(s)	168, 604
BshFI	GGCC	1 cut(s)	446
BsiHKAI	GWGCWC	2 cut(s)	187, 570
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	3 cut(s)	77, 161, 407
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	187, 570
Bsp143I	GATC	2 cut(s)	212, 549
Bsp19I	CCATGG	1 cut(s)	58
BspANI	GGCC	1 cut(s)	446
BspCNI	CTCAG	2 cut(s)	73, 376
BspLI	GGNNCC	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	4 cut(s)	58, 441, 447, 477
BssMI	GATC	2 cut(s)	212, 549
BssT1I	CCWWGG	3 cut(s)	58, 441, 447
Bst6I	CTCTTC	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	571
BstDEI	CTNAG	3 cut(s)	81, 291, 363
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	359, 487, 620
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	2 cut(s)	215, 552
BstMAI	GTCTC	3 cut(s)	77, 161, 407
BstMBI	GATC	2 cut(s)	212, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstPAI	GACNNNNGTC	1 cut(s)	89
BstSFI	CTRYAG	2 cut(s)	171, 588
BstSLI	GKGCMC	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	168, 604
BstXI	CCANNNNNNTGG	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	446
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	359, 487, 620
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	263, 635
CviAII	CATG	3 cut(s)	35, 59, 648
CviJI	RGCY	4 cut(s)	314, 326, 361, 446
CviKI_1	RGCY	4 cut(s)	314, 326, 361, 446
CviQI	GTAC	2 cut(s)	263, 635
DdeI	CTNAG	3 cut(s)	81, 291, 363
DpnI	GATC	2 cut(s)	214, 551
DpnII	GATC	2 cut(s)	212, 549
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
Eco130I	CCWWGG	3 cut(s)	58, 441, 447
Eco147I	AGGCCT	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	369
Eco72I	CACGTG	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	14
EcoT14I	CCWWGG	3 cut(s)	58, 441, 447
ErhI	CCWWGG	3 cut(s)	58, 441, 447
FaeI	CATG	3 cut(s)	38, 62, 651
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 400, 432
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	3 cut(s)	34, 58, 647
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	2 cut(s)	157, 618
FokI	GGATG	3 cut(s)	366, 494, 607
Fsp4HI	GCNGC	2 cut(s)	157, 618
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	2 cut(s)	157, 618
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	1 cut(s)	446
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	3 cut(s)	38, 62, 651
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	2 cut(s)	73, 233
HphI	GGTGA	3 cut(s)	94, 120, 481
Hpy166II	GTNNAC	4 cut(s)	128, 265, 514, 568
Hpy188I	TCNGA	5 cut(s)	10, 70, 366, 388, 481
Hpy188III	TCNNGA	2 cut(s)	164, 583
Hpy8I	GTNNAC	4 cut(s)	128, 265, 514, 568
HpyAV	CCTTC	5 cut(s)	5, 223, 393, 451, 536
HpyCH4IV	ACGT	1 cut(s)	570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
HpyF3I	CTNAG	3 cut(s)	81, 291, 363
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	3 cut(s)	38, 62, 651
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	212, 549
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	8 cut(s)	30, 125, 159, 215, 259, 354, 438, 474
Lsp1109I	GCAGC	2 cut(s)	168, 604
LweI	GCATC	3 cut(s)	316, 475, 629
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	214, 551
MboI	GATC	2 cut(s)	212, 549
MboII	GAAGA	4 cut(s)	127, 130, 182, 571
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	187, 570
MluCI	AATT	8 cut(s)	30, 53, 87, 241, 252, 396, 505, 611
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	372, 424, 460, 487, 585, 589, 625
MseI	TTAA	2 cut(s)	48, 276
MslI	CAYNNNNRTG	2 cut(s)	605, 646
MunI	CAATTG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	501
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	212, 549
NlaIII	CATG	3 cut(s)	38, 62, 651
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	446
PctI	GAATGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	158, 619
PleI	GAGTC	1 cut(s)	227
PmaCI	CACGTG	1 cut(s)	571
PmlI	CACGTG	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	571
PpuMI	RGGWCCY	1 cut(s)	14
PshAI	GACNNNNGTC	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	14
PspCI	CACGTG	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	14
PspPPI	RGGWCCY	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	175
RsaI	GTAC	2 cut(s)	264, 636
RsaNI	GTAC	2 cut(s)	263, 635
RseI	CAYNNNNRTG	2 cut(s)	605, 646
SaqAI	TTAA	2 cut(s)	48, 276
SatI	GCNGC	2 cut(s)	157, 618
Sau3AI	GATC	2 cut(s)	212, 549
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	187, 570
SetI	ASST	8 cut(s)	16, 139, 316, 328, 471, 479, 573, 636
SfaNI	GCATC	3 cut(s)	316, 475, 629
SfcI	CTRYAG	2 cut(s)	171, 588
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	605, 646
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	8 cut(s)	30, 53, 87, 241, 252, 396, 505, 611
SseBI	AGGCCT	1 cut(s)	446
SspMI	CTAG	1 cut(s)	629
StuI	AGGCCT	1 cut(s)	446
StyI	CCWWGG	3 cut(s)	58, 441, 447
TaiI	ACGT	1 cut(s)	573
TasI	AATT	8 cut(s)	30, 53, 87, 241, 252, 396, 505, 611
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	2 cut(s)	48, 276
Tru9I	TTAA	2 cut(s)	48, 276
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	156, 617
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	23, 336, 390, 623
VneI	GTGCAC	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	4 cut(s)	53, 241, 396, 611
XmiI	GTMKAC	1 cut(s)	513
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.