Rorug01G0336900

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002750
Physical Location & Seq
Reverse (-)
45492553 .. 45495872
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0336900.1

Sequence Viewer

Length: 657 bp
ATGAAAAAGCTGTCTCTCTCTCTCTCACCGCAGAGACTAAGAGTGAAATTCACCATGGCTGCTCGGATGTTGCAGAAGCGAATCGGCTCACTCCTCTTCCGCGATCATCCTTCTCTCACCCAAGCGATCAAAGAACAATCTGTTCCTTCTGTATATTCTATCTTCAGCAGATTTCAGCTTGGTAAAAGAGATATTCAGACGGAAACAAAGCCAGCTAATCTTACAAATGAGGATCCTAAGTTGGAAAATCATGAAGCTGATATTTTGAAGCCTAGTTGTGACTCAGATGACCAACCCTCTCACTCATCTGCTGGCAAAGTTGTTGAGATCAAAATGCACGCTGAATACAACTTGAAAACATCCCCGAGGCATGACCTTTGTATGGTCTTCACTTGCACAGTCTGTAACACAAGAACAATGAAGACAGCTTCTCGAGAAGCATACGAGAAAGGTGTGGTGGTGGCACGCTGTAATGGGTGTGACAACCTCCACCTGTTTGCTGATCATCTTGGAATGTTTGGAGAGAAGTGCACTGTTGAGGACTTTCTGGCTGCTCGTGGGGAGGAGGTGAAGAAGGGTACTACTGATTCACTGAATCTGACTATTGAAGATCTGGCTGGAAAGGACTTTGCTGAAAAGAAAGTGGAAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

218

Amino Acids

24.41

Weight (kDa)

8.12

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-DNL PF05180 128 - 188 3.9e-24 DNL zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 102
AciI CCGC 2 cut(s) 29, 100
AclWI GGATC 2 cut(s) 227, 240
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 148
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 3 cut(s) 268, 355, 608
AluBI AGCT 5 cut(s) 10, 178, 215, 257, 428
AluI AGCT 5 cut(s) 10, 178, 215, 257, 428
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 2 cut(s) 18, 28
Alw44I GTGCAC 1 cut(s) 529
AlwI GGATC 2 cut(s) 227, 240
Ama87I CYCGRG 2 cut(s) 364, 432
ApaLI GTGCAC 1 cut(s) 529
ApeKI GCWGC 2 cut(s) 59, 551
ApoI RAATTY 1 cut(s) 47
AsuHPI GGTGA 4 cut(s) 18, 43, 109, 580
AvaI CYCGRG 2 cut(s) 364, 432
BaeGI GKGCMC 1 cut(s) 533
BamHI GGATCC 1 cut(s) 232
BauI CACGAG 1 cut(s) 555
BbsI GAAGAC 2 cut(s) 379, 428
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 2 cut(s) 46, 538
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 18, 28
BfaI CTAG 1 cut(s) 273
BglII AGATCT 1 cut(s) 610
BisI GCNGC 2 cut(s) 60, 552
BlsI GCNGC 2 cut(s) 61, 553
BmeT110I CYCGRG 2 cut(s) 364, 432
BmiI GGNNCC 1 cut(s) 234
BpiI GAAGAC 2 cut(s) 379, 428
BsaJI CCNNGG 2 cut(s) 54, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 382
BseDI CCNNGG 2 cut(s) 54, 365
BseGI GGATG 3 cut(s) 72, 106, 359
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 83, 578
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 2 cut(s) 46, 538
Bsh1236I CGCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 533
BsiHKCI CYCGRG 2 cut(s) 364, 432
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 2 cut(s) 18, 28
BsoBI CYCGRG 2 cut(s) 364, 432
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 6 cut(s) 103, 126, 232, 327, 502, 610
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 2 cut(s) 29, 100
BspCNI CTCAG 1 cut(s) 296
BspFNI CGCG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 2 cut(s) 227, 240
BssECI CCNNGG 2 cut(s) 54, 365
BssMI GATC 6 cut(s) 103, 126, 232, 327, 502, 610
BssSI CACGAG 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 555
Bst4CI ACNGT 2 cut(s) 400, 535
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 4 cut(s) 213, 313, 339, 466
BstDEI CTNAG 3 cut(s) 38, 237, 283
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 72, 106, 359
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 6 cut(s) 106, 129, 235, 330, 505, 613
BstMAI GTCTC 2 cut(s) 18, 28
BstMBI GATC 6 cut(s) 103, 126, 232, 327, 502, 610
BstSLI GKGCMC 1 cut(s) 533
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 46, 538
BstV2I GAAGAC 2 cut(s) 379, 428
BstX2I RGATCY 2 cut(s) 232, 610
BstYI RGATCY 2 cut(s) 232, 610
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 3 cut(s) 72, 106, 359
BtsIMutI CAGTG 2 cut(s) 531, 590
Cac8I GCNNGC 4 cut(s) 213, 313, 339, 466
CciI TCATGA 1 cut(s) 250
Csp6I GTAC 1 cut(s) 579
CviAII CATG 3 cut(s) 55, 251, 371
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 3 cut(s) 38, 237, 283
DpnI GATC 6 cut(s) 105, 128, 234, 329, 504, 612
DpnII GATC 6 cut(s) 103, 126, 232, 327, 502, 610
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 148
Eco88I CYCGRG 2 cut(s) 364, 432
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 3 cut(s) 58, 254, 374
FaiI YATR 6 cut(s) 56, 154, 252, 372, 383, 442
FatI CATG 3 cut(s) 54, 250, 370
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 60, 552
FokI GGATG 3 cut(s) 79, 93, 346
Fsp4HI GCNGC 2 cut(s) 60, 552
FspBI CTAG 1 cut(s) 273
GluI GCNGC 2 cut(s) 60, 552
Hin1II CATG 3 cut(s) 58, 254, 374
HinfI GANTC 4 cut(s) 81, 281, 587, 595
HphI GGTGA 4 cut(s) 18, 43, 109, 580
Hpy166II GTNNAC 1 cut(s) 531
Hpy188I TCNGA 4 cut(s) 66, 198, 286, 600
Hpy188III TCNNGA 3 cut(s) 251, 432, 434
Hpy8I GTNNAC 1 cut(s) 531
HpyAV CCTTC 3 cut(s) 120, 156, 568
HpyCH4III ACNGT 2 cut(s) 400, 535
HpyCH4V TGCA 4 cut(s) 73, 337, 396, 531
HpyF3I CTNAG 3 cut(s) 38, 237, 283
Hsp92II CATG 3 cut(s) 58, 254, 374
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 6 cut(s) 103, 126, 232, 327, 502, 610
LpnPI CCDG 6 cut(s) 225, 297, 506, 533, 599, 603
Lsp1109I GCAGC 2 cut(s) 46, 538
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 3 cut(s) 278, 404, 479
MalI GATC 6 cut(s) 105, 128, 234, 329, 504, 612
MboI GATC 6 cut(s) 103, 126, 232, 327, 502, 610
MboII GAAGA 6 cut(s) 88, 154, 379, 433, 583, 620
MflI RGATCY 2 cut(s) 232, 610
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 1 cut(s) 47
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 8 cut(s) 104, 223, 307, 360, 497, 532, 556, 559
MvnI CGCG 1 cut(s) 102
NcoI CCATGG 1 cut(s) 54
NdeII GATC 6 cut(s) 103, 126, 232, 327, 502, 610
NlaIII CATG 3 cut(s) 58, 254, 374
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 2 cut(s) 278, 479
PaeR7I CTCGAG 1 cut(s) 432
PagI TCATGA 1 cut(s) 250
PfeI GAWTC 3 cut(s) 81, 587, 595
PkrI GCNGC 2 cut(s) 61, 553
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 234
PsuI RGATCY 2 cut(s) 232, 610
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
SatI GCNGC 2 cut(s) 60, 552
Sau3AI GATC 6 cut(s) 103, 126, 232, 327, 502, 610
SchI GAGTC 1 cut(s) 275
SduI GDGCHC 1 cut(s) 533
Sfr274I CTCGAG 1 cut(s) 432
SlaI CTCGAG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 1 cut(s) 47
SsiI CCGC 2 cut(s) 29, 100
SspMI CTAG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 400, 535
TaqI TCGA 1 cut(s) 433
TasI AATT 1 cut(s) 47
TfiI GAWTC 3 cut(s) 81, 587, 595
TscAI CASTG 2 cut(s) 538, 597
TseFI GTSAC 2 cut(s) 278, 479
TseI GCWGC 2 cut(s) 59, 551
Tsp45I GTSAC 2 cut(s) 278, 479
TspDTI ATGAA 3 cut(s) 17, 267, 434
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 2 cut(s) 538, 597
VneI GTGCAC 1 cut(s) 529
XapI RAATTY 1 cut(s) 47
XhoI CTCGAG 1 cut(s) 432
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.