Rorug01G0337000

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
45497276 .. 45498898
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0337000.1

Sequence Viewer

Length: 1185 bp
ATGTGCAAGACCAAAAAGAGCACGCAGGCGATTGAGCCCCGGAGCCCCCTCAAGCCCCGACCCTCCAAGTCCTTCTCCTCCGACGTCCCTTTATCCGGCAACTACAGCACCACCGGCGGCAACAACTCCAGCTACGGCAACTTCTCCAAATCCTCCACCTCCTCCTCCTCTGTCGCCTCCCTCAAGTCCCTCAAGTCCTCCCTCCCCGAAAACCCCGTGATCTATGATACCTCGGAGATCTCCTCCTCCACCAACAACTTCCTCAACCACCGCCTCTCCTCCTCCACCACCTCCTCCTCCTGGCGCTGCACCCTCCGCGGCAAAGACGCCGTCGTTTTCCAGCGCAGGTCCCGCACCCCGATCGACCTCCCGGACCTCCAGCAGAGCCTCTCCCTCATCTCCCGTAGCCACCACAGCAGCCTCATCAAGCTCCTCGGCGCGTCGCTCTCCGGCAGCTACGTCTACCTCGTCTACGAGTTCGTCGCCGGCGTCAACCTCGCCGACTGCCTCCGCAACCCTAACAACCCGAGCTACACAGTCCTCTCCACCTGGCTCTCGCGGCTGCAGATCGCCACCGACCTAGCTCACGGCCTGGACTACATCCACCGCTGCTCAGGCCTCGGCTCCGGCTTGGTCCACAACCACATCAAGAGCTCGAGTATCATTGTTACGGAAGCAACCCTGAACGCCAAGATCTGCCACTTTGGCACGGCCGAGCTCTGCGGAGAGAGCCGGGCGAGGTCGAAGAAGGTAGAAGGAACAAGAGGCTACATGGCGCCGGAGTTTCAAGTGAGCGGGGTCGTCACCCAAAAATGCGATGTGTATGCTTTTGGGGTTGTGATGCTGGAGCTGGTCTCCGGGGAGGAGCCGTTGAAGTATAAGATGGAGGTGGAAGACGGCGGGTATAAGAGAGTGAGTGTTATAGAGACGGCCAGAGAAGCGGTGATGAAAAGTGTTGGTGGAGTGAGGAGGTGGGTGGATAGGAGGTTGAAGGACTCGTTTCCGATGGAGGTGGCGGAGAAGATGGTGCAGGTGGCGCTGGAGTGTGTGGACGATGACCCGGAAAGGAGGCCGGATATGGGTCGGGTTGCGGGATTGGTTTCCAAGTTGTTTTTGGAGTCGCAGAAATGGGCGGAGAATATTGGCTTGCCCATTGACATATCTGTTTCCTTGGCTGCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

394

Amino Acids

43.1

Weight (kDa)

9.07

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 122 - 363 1.5e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 126 - 360 1.6e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1021
AatII GACGTC 1 cut(s) 87
Acc36I ACCTGC 2 cut(s) 336, 1021
AccB1I GGYRCC 1 cut(s) 775
AccBSI CCGCTC 1 cut(s) 795
AccI GTMKAC 2 cut(s) 462, 471
AccII CGCG 3 cut(s) 318, 440, 559
AcoI YGGCCR 2 cut(s) 711, 930
AcyI GRCGYC 4 cut(s) 84, 327, 489, 776
AfiI CCNNNNNNNGG 3 cut(s) 95, 300, 1079
AgsI TTSAA 3 cut(s) 788, 874, 991
AjnI CCWGG 3 cut(s) 299, 548, 591
AluBI AGCT 8 cut(s) 132, 430, 456, 531, 584, 654, 718, 850
AluI AGCT 8 cut(s) 132, 430, 456, 531, 584, 654, 718, 850
Alw21I GWGCWC 3 cut(s) 23, 656, 720
Alw26I GTCTC 2 cut(s) 859, 920
Ama87I CYCGRG 2 cut(s) 526, 655
AoxI GGCC 5 cut(s) 589, 616, 711, 930, 1070
ApeKI GCWGC 6 cut(s) 306, 417, 453, 562, 609, 1175
ArsI GACNNNNNNTTYG 2 cut(s) 315, 347
AspLEI GCGC 5 cut(s) 306, 345, 440, 778, 1039
AspS9I GGNCC 3 cut(s) 348, 373, 634
AsuC2I CCSGG 5 cut(s) 40, 371, 734, 859, 1061
AsuHPI GGTGA 2 cut(s) 796, 955
AvaI CYCGRG 2 cut(s) 526, 655
AvaII GGWCC 3 cut(s) 348, 373, 634
BanI GGYRCC 1 cut(s) 775
BanII GRGCYC 4 cut(s) 39, 47, 656, 720
BbsI GAAGAC 1 cut(s) 900
Bbv12I GWGCWC 3 cut(s) 23, 656, 720
BbvI GCAGC 6 cut(s) 293, 429, 465, 549, 596, 1162
BccI CCATC 3 cut(s) 877, 1000, 1018
BceAI ACGGC 7 cut(s) 151, 314, 604, 726, 853, 913, 945
BcgI CGANNNNNNTGC 4 cut(s) 343, 377, 806, 840
BciT130I CCWGG 3 cut(s) 301, 550, 593
BcnI CCSGG 5 cut(s) 40, 371, 734, 859, 1061
BcoDI GTCTC 2 cut(s) 859, 920
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 2 cut(s) 103, 563
BfoI RGCGCY 3 cut(s) 307, 779, 1040
BfuAI ACCTGC 2 cut(s) 336, 1021
BglI GCCNNNNNGGC 1 cut(s) 705
BglII AGATCT 2 cut(s) 237, 693
BisI GCNGC 9 cut(s) 118, 307, 319, 418, 454, 560, 563, 610, 1176
BlsI GCNGC 9 cut(s) 119, 308, 320, 419, 455, 561, 564, 611, 1177
Bme1390I CCNGG 8 cut(s) 40, 301, 371, 550, 593, 734, 859, 1061
Bme18I GGWCC 3 cut(s) 348, 373, 634
BmeT110I CYCGRG 2 cut(s) 526, 655
BmgT120I GGNCC 3 cut(s) 348, 373, 634
BmiI GGNNCC 5 cut(s) 44, 350, 625, 777, 867
BmrFI CCNGG 8 cut(s) 40, 301, 371, 550, 593, 734, 859, 1061
BmsI GCATC 1 cut(s) 831
BpiI GAAGAC 1 cut(s) 900
BplI GAGNNNNNCTC 4 cut(s) 227, 259, 839, 871
BpmI CTGGAG 4 cut(s) 112, 362, 866, 1061
Bpu10I CCTNAGC 1 cut(s) 613
BpuEI CTTGAG 3 cut(s) 35, 167, 176
BpuMI CCSGG 5 cut(s) 40, 371, 734, 859, 1061
BsaHI GRCGYC 4 cut(s) 84, 327, 489, 776
BsaI GGTCTC 1 cut(s) 859
BsaJI CCNNGG 7 cut(s) 38, 231, 316, 433, 619, 858, 1170
BsaXI ACNNNNNCTCC 4 cut(s) 260, 290, 854, 884
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 300, 1079
Bse118I RCCGGY 2 cut(s) 113, 485
BseBI CCWGG 3 cut(s) 301, 550, 593
BseDI CCNNGG 7 cut(s) 38, 231, 316, 433, 619, 858, 1170
BseGI GGATG 1 cut(s) 600
BseLI CCNNNNNNNGG 3 cut(s) 95, 300, 1079
BseMII CTCAG 1 cut(s) 627
BseX3I CGGCCG 1 cut(s) 711
BseXI GCAGC 6 cut(s) 293, 429, 465, 549, 596, 1162
BsgI GTGCAG 2 cut(s) 292, 1049
Bsh1236I CGCG 3 cut(s) 318, 440, 559
Bsh1285I CGRYCG 2 cut(s) 363, 714
BshFI GGCC 5 cut(s) 591, 618, 713, 932, 1072
BshNI GGYRCC 1 cut(s) 775
BsiEI CGRYCG 2 cut(s) 363, 714
BsiHKAI GWGCWC 3 cut(s) 23, 656, 720
BsiHKCI CYCGRG 2 cut(s) 526, 655
BslFI GGGAC 3 cut(s) 71, 172, 334
BslI CCNNNNNNNGG 3 cut(s) 95, 300, 1079
BsmAI GTCTC 2 cut(s) 859, 920
BsmBI CGTCTC 1 cut(s) 920
BsmFI GGGAC 3 cut(s) 71, 172, 334
BsnI GGCC 5 cut(s) 591, 618, 713, 932, 1072
Bso31I GGTCTC 1 cut(s) 859
BsoBI CYCGRG 2 cut(s) 526, 655
Bsp1286I GDGCHC 5 cut(s) 23, 39, 47, 656, 720
Bsp143I GATC 5 cut(s) 219, 237, 360, 567, 693
BspANI GGCC 5 cut(s) 591, 618, 713, 932, 1072
BspCNI CTCAG 1 cut(s) 626
BspFNI CGCG 3 cut(s) 318, 440, 559
BspLI GGNNCC 5 cut(s) 44, 350, 625, 777, 867
BspMAI CTGCAG 1 cut(s) 567
BspMI ACCTGC 2 cut(s) 336, 1021
BspT107I GGYRCC 1 cut(s) 775
BspTNI GGTCTC 1 cut(s) 859
BsrBI CCGCTC 1 cut(s) 795
BsrFI RCCGGY 2 cut(s) 113, 485
BssAI RCCGGY 2 cut(s) 113, 485
BssECI CCNNGG 7 cut(s) 38, 231, 316, 433, 619, 858, 1170
BssMI GATC 5 cut(s) 219, 237, 360, 567, 693
BssNI GRCGYC 4 cut(s) 84, 327, 489, 776
BssT1I CCWWGG 1 cut(s) 1170
Bst2UI CCWGG 3 cut(s) 301, 550, 593
Bst4CI ACNGT 1 cut(s) 538
BstACI GRCGYC 4 cut(s) 84, 327, 489, 776
BstC8I GCNNGC 4 cut(s) 23, 27, 487, 1148
BstDEI CTNAG 1 cut(s) 613
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 600
BstFNI CGCG 3 cut(s) 318, 440, 559
BstH2I RGCGCY 3 cut(s) 307, 779, 1040
BstHHI GCGC 5 cut(s) 306, 345, 440, 778, 1039
BstKTI GATC 5 cut(s) 222, 240, 363, 570, 696
BstMAI GTCTC 2 cut(s) 859, 920
BstMBI GATC 5 cut(s) 219, 237, 360, 567, 693
BstMCI CGRYCG 2 cut(s) 363, 714
BstNI CCWGG 3 cut(s) 301, 550, 593
BstSCI CCNGG 8 cut(s) 38, 299, 369, 548, 591, 732, 857, 1059
BstSFI CTRYAG 2 cut(s) 103, 563
BstUI CGCG 3 cut(s) 318, 440, 559
BstV1I GCAGC 6 cut(s) 293, 429, 465, 549, 596, 1162
BstV2I GAAGAC 1 cut(s) 900
BstX2I RGATCY 2 cut(s) 237, 693
BstYI RGATCY 2 cut(s) 237, 693
BstZI CGGCCG 1 cut(s) 711
BsuRI GGCC 5 cut(s) 591, 618, 713, 932, 1072
BtgI CCRYGG 1 cut(s) 316
BtgZI GCGATG 1 cut(s) 831
BtsCI GGATG 1 cut(s) 600
BveI ACCTGC 2 cut(s) 336, 1021
Cac8I GCNNGC 4 cut(s) 23, 27, 487, 1148
CfoI GCGC 5 cut(s) 306, 345, 440, 778, 1039
Cfr10I RCCGGY 2 cut(s) 113, 485
Cfr13I GGNCC 3 cut(s) 348, 373, 634
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 3 cut(s) 335, 429, 478
CviAII CATG 1 cut(s) 772
DdeI CTNAG 1 cut(s) 613
DinI GGCGCC 1 cut(s) 777
DpnI GATC 5 cut(s) 221, 239, 362, 569, 695
DpnII GATC 5 cut(s) 219, 237, 360, 567, 693
EaeI YGGCCR 2 cut(s) 711, 930
EagI CGGCCG 1 cut(s) 711
EciI GGCGGA 2 cut(s) 1031, 1148
Ecl136II GAGCTC 2 cut(s) 654, 718
EclXI CGGCCG 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 1170
Eco147I AGGCCT 1 cut(s) 618
Eco24I GRGCYC 4 cut(s) 39, 47, 656, 720
Eco31I GGTCTC 1 cut(s) 859
Eco47I GGWCC 3 cut(s) 348, 373, 634
Eco52I CGGCCG 1 cut(s) 711
Eco53kI GAGCTC 2 cut(s) 654, 718
Eco88I CYCGRG 2 cut(s) 526, 655
EcoICRI GAGCTC 2 cut(s) 654, 718
EcoO109I RGGNCCY 1 cut(s) 348
EcoRII CCWGG 3 cut(s) 299, 548, 591
EcoT14I CCWWGG 1 cut(s) 1170
EcoT38I GRGCYC 4 cut(s) 39, 47, 656, 720
EgeI GGCGCC 1 cut(s) 777
EheI GGCGCC 1 cut(s) 777
ErhI CCWWGG 1 cut(s) 1170
Esp3I CGTCTC 1 cut(s) 920
FaeI CATG 1 cut(s) 775
FaiI YATR 8 cut(s) 225, 773, 825, 879, 906, 923, 1079, 1160
FaqI GGGAC 3 cut(s) 71, 172, 334
FatI CATG 1 cut(s) 771
FauI CCCGC 4 cut(s) 359, 788, 893, 1084
FblI GTMKAC 2 cut(s) 462, 471
Fnu4HI GCNGC 9 cut(s) 118, 307, 319, 418, 454, 560, 563, 610, 1176
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 4 cut(s) 39, 47, 656, 720
Fsp4HI GCNGC 9 cut(s) 118, 307, 319, 418, 454, 560, 563, 610, 1176
FspBI CTAG 1 cut(s) 581
GlaI GCGC 5 cut(s) 305, 344, 439, 777, 1038
GluI GCNGC 9 cut(s) 118, 307, 319, 418, 454, 560, 563, 610, 1176
GsuI CTGGAG 4 cut(s) 112, 362, 866, 1061
HaeII RGCGCY 3 cut(s) 307, 779, 1040
HaeIII GGCC 5 cut(s) 591, 618, 713, 932, 1072
HgaI GACGC 3 cut(s) 335, 429, 478
HhaI GCGC 5 cut(s) 306, 345, 440, 778, 1039
Hin1I GRCGYC 4 cut(s) 84, 327, 489, 776
Hin1II CATG 1 cut(s) 775
Hin6I GCGC 5 cut(s) 304, 343, 438, 776, 1037
HinP1I GCGC 5 cut(s) 304, 343, 438, 776, 1037
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 2 cut(s) 995, 1118
HphI GGTGA 2 cut(s) 796, 955
Hpy166II GTNNAC 5 cut(s) 463, 472, 493, 637, 1051
Hpy188I TCNGA 3 cut(s) 82, 235, 1005
Hpy188III TCNNGA 1 cut(s) 649
Hpy8I GTNNAC 5 cut(s) 463, 472, 493, 637, 1051
Hpy99I CGWCG 4 cut(s) 86, 335, 445, 485
HpyAV CCTTC 4 cut(s) 82, 742, 749, 985
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 2 cut(s) 84, 459
HpyCH4V TGCA 4 cut(s) 6, 309, 565, 1030
HpyF3I CTNAG 1 cut(s) 613
HpySE526I ACGT 2 cut(s) 84, 459
Hsp92I GRCGYC 4 cut(s) 84, 327, 489, 776
Hsp92II CATG 1 cut(s) 775
HspAI GCGC 5 cut(s) 304, 343, 438, 776, 1037
KasI GGCGCC 1 cut(s) 775
KroI GCCGGC 1 cut(s) 485
KroNI GCCGGC 1 cut(s) 487
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 5 cut(s) 219, 237, 360, 567, 693
LmnI GCTCC 5 cut(s) 42, 435, 629, 847, 865
Lsp1109I GCAGC 6 cut(s) 293, 429, 465, 549, 596, 1162
LweI GCATC 1 cut(s) 831
MaeI CTAG 1 cut(s) 581
MaeII ACGT 2 cut(s) 84, 459
MaeIII GTNAC 2 cut(s) 667, 802
MalI GATC 5 cut(s) 221, 239, 362, 569, 695
MbiI CCGCTC 1 cut(s) 795
MboI GATC 5 cut(s) 219, 237, 360, 567, 693
MboII GAAGA 3 cut(s) 757, 905, 1033
MflI RGATCY 2 cut(s) 237, 693
MhlI GDGCHC 5 cut(s) 23, 39, 47, 656, 720
Mly113I GGCGCC 1 cut(s) 776
MlyI GAGTC 2 cut(s) 989, 1127
MmeI TCCRAC 1 cut(s) 105
MreI CGCCGGCG 1 cut(s) 485
MroNI GCCGGC 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 318, 609
MspR9I CCNGG 8 cut(s) 40, 301, 371, 550, 593, 734, 859, 1061
MvaI CCWGG 3 cut(s) 301, 550, 593
MvnI CGCG 3 cut(s) 318, 440, 559
NaeI GCCGGC 1 cut(s) 487
NarI GGCGCC 1 cut(s) 776
NciI CCSGG 5 cut(s) 40, 371, 734, 859, 1061
NdeII GATC 5 cut(s) 219, 237, 360, 567, 693
NgoMIV GCCGGC 1 cut(s) 485
NlaIII CATG 1 cut(s) 775
NlaIV GGNNCC 5 cut(s) 44, 350, 625, 777, 867
NmeAIII GCCGAG 3 cut(s) 414, 600, 739
NmuCI GTSAC 1 cut(s) 802
PaeR7I CTCGAG 1 cut(s) 655
PaqCI CACCTGC 1 cut(s) 1021
PceI AGGCCT 1 cut(s) 618
PcsI WCGNNNNNNNCGW 2 cut(s) 465, 486
PdiI GCCGGC 1 cut(s) 487
PflFI GACNNNGTC 1 cut(s) 329
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 9 cut(s) 119, 308, 320, 419, 455, 561, 564, 611, 1177
Ple19I CGATCG 1 cut(s) 363
PleI GAGTC 2 cut(s) 989, 1126
PluTI GGCGCC 1 cut(s) 779
PpsI GAGTC 2 cut(s) 989, 1126
PpuMI RGGWCCY 1 cut(s) 348
Psp124BI GAGCTC 2 cut(s) 656, 720
Psp5II RGGWCCY 1 cut(s) 348
Psp6I CCWGG 3 cut(s) 299, 548, 591
PspGI CCWGG 3 cut(s) 299, 548, 591
PspN4I GGNNCC 5 cut(s) 44, 350, 625, 777, 867
PspPI GGNCC 3 cut(s) 348, 373, 634
PspPPI RGGWCCY 1 cut(s) 348
PspXI VCTCGAGB 1 cut(s) 655
PstI CTGCAG 1 cut(s) 567
PsuI RGATCY 2 cut(s) 237, 693
PsyI GACNNNGTC 1 cut(s) 329
PvuI CGATCG 1 cut(s) 363
SacI GAGCTC 2 cut(s) 656, 720
SacII CCGCGG 1 cut(s) 319
SatI GCNGC 9 cut(s) 118, 307, 319, 418, 454, 560, 563, 610, 1176
Sau3AI GATC 5 cut(s) 219, 237, 360, 567, 693
Sau96I GGNCC 3 cut(s) 348, 373, 634
SchI GAGTC 2 cut(s) 989, 1127
ScrFI CCNGG 8 cut(s) 40, 301, 371, 550, 593, 734, 859, 1061
SduI GDGCHC 5 cut(s) 23, 39, 47, 656, 720
SfaNI GCATC 1 cut(s) 831
SfcI CTRYAG 2 cut(s) 103, 563
SfoI GGCGCC 1 cut(s) 777
Sfr274I CTCGAG 1 cut(s) 655
Sfr303I CCGCGG 1 cut(s) 319
SgrAI CRCCGGYG 2 cut(s) 113, 485
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 3 cut(s) 348, 373, 634
SlaI CTCGAG 1 cut(s) 655
SmlI CTYRAG 4 cut(s) 50, 182, 191, 655
SmoI CTYRAG 4 cut(s) 50, 182, 191, 655
SseBI AGGCCT 1 cut(s) 618
SspDI GGCGCC 1 cut(s) 775
SspI AATATT 1 cut(s) 1141
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 2 cut(s) 656, 720
StuI AGGCCT 1 cut(s) 618
StyD4I CCNGG 8 cut(s) 38, 299, 369, 548, 591, 732, 857, 1059
StyI CCWWGG 1 cut(s) 1170
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 2 cut(s) 87, 462
TaqI TCGA 3 cut(s) 363, 656, 743
TauI GCSGC 3 cut(s) 120, 321, 562
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 6 cut(s) 306, 417, 453, 562, 609, 1175
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 1 cut(s) 962
TspGWI ACGGA 1 cut(s) 686
Tth111I GACNNNGTC 1 cut(s) 329
VpaK11BI GGWCC 3 cut(s) 348, 373, 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 1111
XhoI CTCGAG 1 cut(s) 655
XmiI GTMKAC 2 cut(s) 462, 471
XspI CTAG 1 cut(s) 581
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.