MD04G1130400.v1.1

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
21694051 .. 21696106
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1130400.v1.1.491

Sequence Viewer

Length: 1701 bp
ATGGATCCTCGTCGTAGGGGTTTCTCTGATTCTTTCAATGGAGTTCAACTGGGTAACCAACCTTTACCCATTCTTTCACATCCAACCGTTGTAGCCGGATCCCGATTCGATAGTAATACCTTCTTTGACAATAGTTACAGAAATTTTAGTTGCCCTCAACCCGGTCTTACCCCGAACGGTGTATCTATGTACTCAAGTATGCTTATGGAAGAAGATATGGAGGACAAGATTTGCATGCTTCAAGAGTCGTTGGAGCTTCAAGCTGCCGAGAAGTCATTCTATGAGGTCTTTGGAAAGAAATATCCCCCCTCCCCAGAGTTATTTCGTCGTTACGCTAGTCAATATGGTGAGAGCCCGGCTGAAAGTTCCTCTGGAACTTGGAGTAATTATATCACTAGTAGTTGCAACAGTGGTGGTTACTTTGGTGATACTACGTCGATTCAAAGTCCAGATGGATATTCATCTCAGTTACAAGGTCTTCCGTCATATAGCATTTCTCAATCATTTAACGGGTCTTCAACAAGGGTCAGTAGCCTGGATGGGCTGGGGGTTGATGAGGCTAGTAGATTTCTTCTTGGAGAGACTAATTTGGTTGTTGAACTGGAGGCAAATGGGATGTCAGTTCACACGCCAAAGGTTGGGGCAGCGGCATCTTATGTCAAAGTGGAGAGAACGGATGAAGGAGAATATTCTTCTGGTGGGTCAAGGGGAAGGAAGAATCTATATAGGGAGGACGAAGATGTGGAGGAAAAAAGGAGTAGCAAGCAAGCGGCTGTTTCGTCTGAATCTCCTTTGCAGTCAGAGATGTTTGATGTTGTATTGCTTTGTAGCATAGGGGAGGGTCAGGAGCGTTTGGAATCTCTTCGTGAGGCCTTGCAAGATGGAATGAGCAAAAGTGTGGTGGATTTGAGAACCCTCCTAATTAGTTATGCACATGCGGTTGCAGCTGATGATCATAGGACCGTTAATGAACTACTAAAGAAGGTCAGACAACATTCTTCACCTTTTGGAGATGGGACTCAGAGAATCGCTCATTGCTTTGCCAATGGCCTTGAAGCACGCTTAGCTGGTACAGGTAGCCAGATTTATAAAGGTATTGTTAGCAAAAGGACATCGGCTGCTGATATCTTGAAAGCATACCATTTATACCTTGTTGCATCTCCATTTAAGAAGATGTCTAATTTTGTCACGAACGTCACAATAATGAATTTAGCTGAAAAGTCGACAAGGCTCCATGTCATTGATTTTGGTGGACCCCCAAAGGTTCGGATTACTGGAATTGAATTTCCTCAACCGGGATTTCGGCCAGCTGAGCGAGTTGAGGAAACAGGACGACGTTTGGCAGCTTATGCTGAGAAGTTCAATGTGCCGTTCGAGTACAATGCTATTGTAAAGAAATGGGAAACCATTACACTTGAGGAACTCAAGATCGACAAGGATGAAGTTCTTGTTGTGAACTTTTTATATCGGGGTAAGAACTTGCTCGACGAAAGTGTGTCTGTGGACAGTGTAAGAAACATGGTTCTTGATTTGATAAGGAGAATCAATCCAGACATTTTCATCCATGAAGTTGTTAATGGAGCGTACAATGCCCCCTTCTTCGAAATGATGTCAATTGAGAAAAAGATCTTTGGCAGGGAGGCTTTAAATGTTATAACTTGTGAAGGCTGGGAAAGAGTGGAAAGGCCAGAAACATACTAG

Protein Analysis

567

Amino Acids

63.01

Weight (kDa)

5.35

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 303 - 534 2.3e-56 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1089, 1655
AccB7I CCANNNNNTGG 1 cut(s) 638
AccI GTMKAC 1 cut(s) 1223
AciI CCGC 3 cut(s) 647, 770, 938
AclWI GGATC 3 cut(s) 12, 93, 106
AcoI YGGCCR 1 cut(s) 1304
AcsI RAATTY 3 cut(s) 142, 1207, 1283
AfaI GTAC 4 cut(s) 191, 1072, 1379, 1586
AfiI CCNNNNNNNGG 3 cut(s) 161, 638, 1295
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 7 cut(s) 256, 263, 947, 1067, 1214, 1310, 1346
AluI AGCT 7 cut(s) 256, 263, 947, 1067, 1214, 1310, 1346
Alw26I GTCTC 1 cut(s) 575
AlwI GGATC 3 cut(s) 12, 93, 106
AoxI GGCC 4 cut(s) 870, 1048, 1304, 1685
ApeKI GCWGC 5 cut(s) 263, 644, 944, 1118, 1343
ApoI RAATTY 3 cut(s) 142, 1207, 1283
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
Asp700I GAANNNNTTC 2 cut(s) 275, 861
AspS9I GGNCC 2 cut(s) 960, 1253
AsuC2I CCSGG 3 cut(s) 162, 356, 1296
AsuHPI GGTGA 3 cut(s) 359, 437, 993
AsuII TTCGAA 1 cut(s) 1602
AvaII GGWCC 2 cut(s) 960, 1253
BamHI GGATCC 2 cut(s) 4, 98
BanII GRGCYC 1 cut(s) 356
BbsI GAAGAC 2 cut(s) 470, 507
BbvI GCAGC 5 cut(s) 250, 656, 956, 1105, 1355
BccI CCATC 4 cut(s) 446, 533, 875, 1007
BceAI ACGGC 1 cut(s) 1354
BcgI CGANNNNNNTGC 2 cut(s) 1364, 1398
BciT130I CCWGG 1 cut(s) 536
BclI TGATCA 1 cut(s) 952
BcnI CCSGG 3 cut(s) 162, 356, 1296
BcoDI GTCTC 1 cut(s) 575
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 4 cut(s) 336, 396, 561, 1699
BglII AGATCT 1 cut(s) 1626
BisI GCNGC 7 cut(s) 264, 645, 648, 771, 945, 1119, 1344
BlpI GCTNAGC 2 cut(s) 1063, 1311
BlsI GCNGC 7 cut(s) 265, 646, 649, 772, 946, 1120, 1345
Bme1390I CCNGG 4 cut(s) 162, 356, 536, 1296
Bme18I GGWCC 2 cut(s) 960, 1253
BmgT120I GGNCC 2 cut(s) 960, 1253
BmiI GGNNCC 4 cut(s) 6, 100, 1232, 1255
BmrFI CCNGG 4 cut(s) 162, 356, 536, 1296
BmrI ACTGGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 659, 1166
BmuI ACTGGG 1 cut(s) 59
BpiI GAAGAC 2 cut(s) 470, 507
BplI GAGNNNNNCTC 2 cut(s) 1015, 1047
BpmI CTGGAG 1 cut(s) 623
Bpu1102I GCTNAGC 2 cut(s) 1063, 1311
Bpu14I TTCGAA 1 cut(s) 1602
BpuEI CTTGAG 3 cut(s) 178, 1409, 1436
BpuMI CCSGG 3 cut(s) 162, 356, 1296
BsaBI GATNNNNATC 1 cut(s) 460
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 638, 1295
Bse1I ACTGG 3 cut(s) 54, 606, 1279
Bse3DI GCAATG 1 cut(s) 1033
Bse8I GATNNNNATC 1 cut(s) 460
BseBI CCWGG 1 cut(s) 536
BseGI GGATG 6 cut(s) 79, 544, 621, 682, 1444, 1560
BseJI GATNNNNATC 1 cut(s) 460
BseLI CCNNNNNNNGG 3 cut(s) 161, 638, 1295
BseMI GCAATG 1 cut(s) 1033
BseMII CTCAG 4 cut(s) 479, 1034, 1302, 1344
BseNI ACTGG 3 cut(s) 54, 606, 1279
BseXI GCAGC 5 cut(s) 250, 656, 956, 1105, 1355
BseYI CCCAGC 2 cut(s) 544, 1668
BshFI GGCC 4 cut(s) 872, 1050, 1306, 1687
BsiSI CCGG 4 cut(s) 96, 162, 356, 1295
BslFI GGGAC 1 cut(s) 1030
BslI CCNNNNNNNGG 3 cut(s) 161, 638, 1295
BsmAI GTCTC 1 cut(s) 575
BsmFI GGGAC 1 cut(s) 1030
BsnI GGCC 4 cut(s) 872, 1050, 1306, 1687
Bsp119I TTCGAA 1 cut(s) 1602
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 5 cut(s) 4, 98, 952, 1428, 1626
Bsp1720I GCTNAGC 2 cut(s) 1063, 1311
BspACI CCGC 3 cut(s) 647, 770, 938
BspANI GGCC 4 cut(s) 872, 1050, 1306, 1687
BspCNI CTCAG 4 cut(s) 478, 1033, 1303, 1345
BspLI GGNNCC 4 cut(s) 6, 100, 1232, 1255
BspPI GGATC 3 cut(s) 12, 93, 106
BspT104I TTCGAA 1 cut(s) 1602
BsrDI GCAATG 1 cut(s) 1033
BsrI ACTGG 3 cut(s) 54, 606, 1279
BssMI GATC 5 cut(s) 4, 98, 952, 1428, 1626
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 5 cut(s) 88, 179, 410, 964, 1508
Bst6I CTCTTC 1 cut(s) 867
BstAPI GCANNNNNTGC 1 cut(s) 1349
BstBI TTCGAA 1 cut(s) 1602
BstC8I GCNNGC 5 cut(s) 236, 764, 768, 1060, 1308
BstDEI CTNAG 5 cut(s) 465, 1020, 1063, 1311, 1353
BstEII GGTNACC 1 cut(s) 53
BstF5I GGATG 6 cut(s) 79, 544, 621, 682, 1444, 1560
BstKTI GATC 5 cut(s) 7, 101, 955, 1431, 1629
BstMAI GTCTC 1 cut(s) 575
BstMBI GATC 5 cut(s) 4, 98, 952, 1428, 1626
BstMWI GCNNNNNNNGC 5 cut(s) 944, 1064, 1312, 1349, 1589
BstNI CCWGG 1 cut(s) 536
BstNSI RCATGY 2 cut(s) 238, 938
BstPI GGTNACC 1 cut(s) 53
BstSCI CCNGG 4 cut(s) 160, 354, 534, 1294
BstV1I GCAGC 5 cut(s) 250, 656, 956, 1105, 1355
BstV2I GAAGAC 2 cut(s) 470, 507
BstX2I RGATCY 3 cut(s) 4, 98, 1626
BstYI RGATCY 3 cut(s) 4, 98, 1626
BsuRI GGCC 4 cut(s) 872, 1050, 1306, 1687
BtsCI GGATG 6 cut(s) 79, 544, 621, 682, 1444, 1560
BtsIMutI CAGTG 2 cut(s) 415, 1513
Cac8I GCNNGC 5 cut(s) 236, 764, 768, 1060, 1308
Cfr13I GGNCC 2 cut(s) 960, 1253
Csp6I GTAC 4 cut(s) 190, 1071, 1378, 1585
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 5 cut(s) 235, 935, 1235, 1519, 1565
CviQI GTAC 4 cut(s) 190, 1071, 1378, 1585
DdeI CTNAG 5 cut(s) 465, 1020, 1063, 1311, 1353
DpnI GATC 5 cut(s) 6, 100, 954, 1430, 1628
DpnII GATC 5 cut(s) 4, 98, 952, 1428, 1626
DraI TTTAAA 1 cut(s) 1647
EaeI YGGCCR 1 cut(s) 1304
Eam1104I CTCTTC 1 cut(s) 867
EarI CTCTTC 1 cut(s) 867
Eco147I AGGCCT 1 cut(s) 872
Eco24I GRGCYC 1 cut(s) 356
Eco32I GATATC 1 cut(s) 1126
Eco47I GGWCC 2 cut(s) 960, 1253
Eco91I GGTNACC 1 cut(s) 53
EcoO65I GGTNACC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 534
EcoRV GATATC 1 cut(s) 1126
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 5 cut(s) 238, 938, 1238, 1522, 1568
FaqI GGGAC 1 cut(s) 1030
FatI CATG 5 cut(s) 234, 934, 1234, 1518, 1564
FbaI TGATCA 1 cut(s) 952
FblI GTMKAC 1 cut(s) 1223
Fnu4HI GCNGC 7 cut(s) 264, 645, 648, 771, 945, 1119, 1344
FokI GGATG 6 cut(s) 66, 551, 628, 689, 1451, 1547
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 7 cut(s) 264, 645, 648, 771, 945, 1119, 1344
FspBI CTAG 4 cut(s) 336, 396, 561, 1699
GluI GCNGC 7 cut(s) 264, 645, 648, 771, 945, 1119, 1344
GsaI CCCAGC 2 cut(s) 548, 1672
GsuI CTGGAG 1 cut(s) 623
HaeIII GGCC 4 cut(s) 872, 1050, 1306, 1687
HapII CCGG 4 cut(s) 96, 162, 356, 1295
Hin1II CATG 5 cut(s) 238, 938, 1238, 1522, 1568
HincII GTYRAC 1 cut(s) 1224
HindII GTYRAC 1 cut(s) 1224
HpaII CCGG 4 cut(s) 96, 162, 356, 1295
HphI GGTGA 3 cut(s) 359, 437, 993
Hpy166II GTNNAC 5 cut(s) 625, 1224, 1253, 1456, 1504
Hpy188I TCNGA 6 cut(s) 28, 784, 802, 989, 1023, 1269
Hpy8I GTNNAC 5 cut(s) 625, 1224, 1253, 1456, 1504
Hpy99I CGWCG 5 cut(s) 15, 330, 439, 1338, 1490
HpyAV CCTTC 6 cut(s) 130, 674, 705, 976, 1606, 1658
HpyCH4III ACNGT 5 cut(s) 88, 179, 410, 964, 1508
HpyCH4IV ACGT 3 cut(s) 434, 1194, 1336
HpyCH4V TGCA 7 cut(s) 234, 405, 796, 877, 932, 944, 1157
HpyF10VI GCNNNNNNNGC 5 cut(s) 944, 1064, 1312, 1349, 1589
HpyF3I CTNAG 5 cut(s) 465, 1020, 1063, 1311, 1353
HpySE526I ACGT 3 cut(s) 434, 1194, 1336
Hsp92II CATG 5 cut(s) 238, 938, 1238, 1522, 1568
Ksp22I TGATCA 1 cut(s) 952
Kzo9I GATC 5 cut(s) 4, 98, 952, 1428, 1626
LmnI GCTCC 4 cut(s) 253, 847, 1236, 1580
Lsp1109I GCAGC 5 cut(s) 250, 656, 956, 1105, 1355
LweI GCATC 2 cut(s) 659, 1166
MaeI CTAG 4 cut(s) 336, 396, 561, 1699
MaeII ACGT 3 cut(s) 434, 1194, 1336
MaeIII GTNAC 7 cut(s) 53, 134, 329, 416, 468, 1186, 1195
MalI GATC 5 cut(s) 6, 100, 954, 1430, 1628
MboI GATC 5 cut(s) 4, 98, 952, 1428, 1626
MfeI CAATTG 1 cut(s) 1614
MflI RGATCY 3 cut(s) 4, 98, 1626
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 9 cut(s) 142, 385, 586, 921, 1180, 1207, 1278, 1283, 1614
MlyI GAGTC 2 cut(s) 254, 1012
MmeI TCCRAC 2 cut(s) 107, 231
MroXI GAANNNNTTC 2 cut(s) 275, 861
MseI TTAA 5 cut(s) 507, 966, 1167, 1575, 1646
MslI CAYNNNNRTG 1 cut(s) 1202
MspA1I CMGCKG 3 cut(s) 647, 947, 1310
MspI CCGG 4 cut(s) 96, 162, 356, 1295
MspR9I CCNGG 4 cut(s) 162, 356, 536, 1296
MunI CAATTG 1 cut(s) 1614
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 5 cut(s) 944, 1064, 1312, 1349, 1589
NciI CCSGG 3 cut(s) 162, 356, 1296
NdeII GATC 5 cut(s) 4, 98, 952, 1428, 1626
NlaIII CATG 5 cut(s) 238, 938, 1238, 1522, 1568
NlaIV GGNNCC 4 cut(s) 6, 100, 1232, 1255
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 1186, 1195
NspI RCATGY 2 cut(s) 238, 938
NspV TTCGAA 1 cut(s) 1602
PaeI GCATGC 1 cut(s) 238
PceI AGGCCT 1 cut(s) 872
PdmI GAANNNNTTC 2 cut(s) 275, 861
PfeI GAWTC 8 cut(s) 29, 105, 439, 718, 785, 857, 1026, 1542
PflMI CCANNNNNTGG 1 cut(s) 638
PkrI GCNGC 7 cut(s) 265, 646, 649, 772, 946, 1120, 1345
PleI GAGTC 2 cut(s) 253, 1012
PpsI GAGTC 2 cut(s) 253, 1012
PsiI TTATAA 2 cut(s) 1089, 1655
Psp6I CCWGG 1 cut(s) 534
PspEI GGTNACC 1 cut(s) 53
PspFI CCCAGC 2 cut(s) 544, 1668
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 4 cut(s) 6, 100, 1232, 1255
PspPI GGNCC 2 cut(s) 960, 1253
PsuI RGATCY 3 cut(s) 4, 98, 1626
PvuII CAGCTG 2 cut(s) 947, 1310
RsaI GTAC 4 cut(s) 191, 1072, 1379, 1586
RsaNI GTAC 4 cut(s) 190, 1071, 1378, 1585
RseI CAYNNNNRTG 1 cut(s) 1202
SalI GTCGAC 1 cut(s) 1222
SaqAI TTAA 5 cut(s) 507, 966, 1167, 1575, 1646
SatI GCNGC 7 cut(s) 264, 645, 648, 771, 945, 1119, 1344
Sau3AI GATC 5 cut(s) 4, 98, 952, 1428, 1626
Sau96I GGNCC 2 cut(s) 960, 1253
SchI GAGTC 2 cut(s) 254, 1012
ScrFI CCNGG 4 cut(s) 162, 356, 536, 1296
SduI GDGCHC 1 cut(s) 356
SfaNI GCATC 2 cut(s) 659, 1166
SfuI TTCGAA 1 cut(s) 1602
SinI GGWCC 2 cut(s) 960, 1253
SmiMI CAYNNNNRTG 1 cut(s) 1202
SmlI CTYRAG 3 cut(s) 193, 1415, 1424
SmoI CTYRAG 3 cut(s) 193, 1415, 1424
SpeI ACTAGT 1 cut(s) 395
SphI GCATGC 1 cut(s) 238
Sse9I AATT 9 cut(s) 142, 385, 586, 921, 1180, 1207, 1278, 1283, 1614
SseBI AGGCCT 1 cut(s) 872
SsiI CCGC 3 cut(s) 647, 770, 938
SspI AATATT 1 cut(s) 689
SspMI CTAG 4 cut(s) 336, 396, 561, 1699
StuI AGGCCT 1 cut(s) 872
StyD4I CCNGG 4 cut(s) 160, 354, 534, 1294
TaaI ACNGT 5 cut(s) 88, 179, 410, 964, 1508
TaiI ACGT 3 cut(s) 437, 1197, 1339
TaqI TCGA 7 cut(s) 108, 437, 1223, 1374, 1431, 1485, 1602
TasI AATT 9 cut(s) 142, 385, 586, 921, 1180, 1207, 1278, 1283, 1614
TatI WGTACW 2 cut(s) 189, 1377
TauI GCSGC 2 cut(s) 650, 773
TfiI GAWTC 8 cut(s) 29, 105, 439, 718, 785, 857, 1026, 1542
Tru1I TTAA 5 cut(s) 507, 966, 1167, 1575, 1646
Tru9I TTAA 5 cut(s) 507, 966, 1167, 1575, 1646
TscAI CASTG 2 cut(s) 415, 1513
TseFI GTSAC 2 cut(s) 1186, 1195
TseI GCWGC 5 cut(s) 263, 644, 944, 1118, 1343
Tsp45I GTSAC 2 cut(s) 1186, 1195
TspDTI ATGAA 7 cut(s) 450, 693, 984, 1220, 1455, 1549, 1581
TspGWI ACGGA 2 cut(s) 471, 689
TspRI CASTG 2 cut(s) 415, 1513
Van91I CCANNNNNTGG 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 960, 1253
XapI RAATTY 3 cut(s) 142, 1207, 1283
XceI RCATGY 2 cut(s) 238, 938
XmiI GTMKAC 1 cut(s) 1223
XmnI GAANNNNTTC 2 cut(s) 275, 861
XspI CTAG 4 cut(s) 336, 396, 561, 1699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.