FvH4_6g13510

UPF0161 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015936
Physical Location & Seq
Forward (+)
8197085 .. 8198137
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13510.t1

Sequence Viewer

Length: 438 bp
ATGGCGGTTGTGAACTATCATCAACCTCTGTTACTAGCATTTCAGCCCCAATCCCAAAACCCTAACTTCAATTCCCGCAAAATTCACCGAACCCAATTCAATACTTCGATTTCTCGACGATACCCAGTAACCAATTGCTCGAATGGAGTCTCAGACTCCGACCCCAACAGTCCACAAGATAAGGAAGTGAACAGTTTGGGAGTCAAAGCAGCATTATCGATGCTCAAGTTCTACAAAAGGGAGATATCGCCGTTGATGCCGAATAGTTGCCGGTACGTTCCGACGTGCAGCGAGTACTCCATGGAAGCTTACAAGAGATATGGGGTTGCAAAAGGCACAGTCTTGACTGCTTGGCGCCTCTGCCGCTGCAATCCTCTAGGTGGTTCTGGTTATGATCCTCCTAGATGGTTCAATGAGACAAATTTGCCTGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Haemolytic

Protein Analysis

146

Amino Acids

16.47

Weight (kDa)

9.18

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YidD PF01809 70 - 133 8.8e-27 Putative membrane protein insertion efficiency factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09310
fragaria_vesca FvH4_6g13510 FvH4_6g13510
malus_domestica MD12G1143600.v1.1
prunus_persica Prupe.6G257100_v2.0.a1
pyrus_communis pycom12g13830
rosa_chinensis RchiOBHm_Chr3g0466381
rosa_laevigata RLG00000024579
rosa_multiflora Rmu_sc0003480.1_g000004
rosa_roxburghii Rroxscaffold_6G00414520
rosa_rugosa Rorug03G0081400
rosa_samantha Rh3AG127900 Rh3BG149200 Rh3DG149900
rosa_wichuraiana Rw3G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AciI CCGC 3 cut(s) 5, 76, 364
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 2 cut(s) 81, 421
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 2 cut(s) 275, 296
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 3 cut(s) 70, 100, 412
AjiI CACGTC 1 cut(s) 285
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 2 cut(s) 154, 410
AlwI GGATC 1 cut(s) 389
ApeKI GCWGC 3 cut(s) 209, 288, 366
ApoI RAATTY 2 cut(s) 81, 421
AspLEI GCGC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 77
BanI GGYRCC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 221, 300, 353
BccI CCATC 1 cut(s) 399
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 2 cut(s) 154, 410
BfaI CTAG 3 cut(s) 35, 377, 402
BfoI RGCGCY 1 cut(s) 358
BisI GCNGC 4 cut(s) 210, 289, 364, 367
BlsI GCNGC 4 cut(s) 211, 290, 365, 368
BmcAI AGTACT 1 cut(s) 296
BmgBI CACGTC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 356
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 210, 246
BmuI ACTGGG 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 221, 300, 353
BsgI GTGCAG 1 cut(s) 307
BshNI GGYRCC 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 218
BsiSI CCGG 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 2 cut(s) 154, 410
Bsp143I GATC 1 cut(s) 394
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 3 cut(s) 5, 76, 364
BspCNI CTCAG 1 cut(s) 164
BspDI ATCGAT 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 356
BspPI GGATC 1 cut(s) 389
BspT107I GGYRCC 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 1 cut(s) 394
BssNI GRCGYC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 3 cut(s) 170, 194, 340
Bst6I CTCTTC 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 2 cut(s) 154, 410
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 2 cut(s) 256, 363
BstV1I GCAGC 3 cut(s) 221, 300, 353
Bsu15I ATCGAT 1 cut(s) 218
BsuTUI ATCGAT 1 cut(s) 218
BtgI CCRYGG 1 cut(s) 300
BtrI CACGTC 1 cut(s) 285
CfoI GCGC 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 270
ClaI ATCGAT 1 cut(s) 218
Csp6I GTAC 2 cut(s) 274, 295
CviAII CATG 1 cut(s) 301
CviJI RGCY 2 cut(s) 46, 308
CviKI_1 RGCY 2 cut(s) 46, 308
CviQI GTAC 2 cut(s) 274, 295
DdeI CTNAG 1 cut(s) 151
DinI GGCGCC 1 cut(s) 356
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 300
Eco32I GATATC 1 cut(s) 246
EcoRV GATATC 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 300
EgeI GGCGCC 1 cut(s) 356
EheI GGCGCC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 1 cut(s) 304
FaiI YATR 3 cut(s) 302, 321, 393
FatI CATG 1 cut(s) 300
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 4 cut(s) 210, 289, 364, 367
Fsp4HI GCNGC 4 cut(s) 210, 289, 364, 367
FspBI CTAG 3 cut(s) 35, 377, 402
GlaI GCGC 1 cut(s) 356
GluI GCNGC 4 cut(s) 210, 289, 364, 367
HaeII RGCGCY 1 cut(s) 358
HapII CCGG 1 cut(s) 271
HhaI GCGC 1 cut(s) 357
Hin1I GRCGYC 1 cut(s) 355
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 3 cut(s) 147, 155, 201
HpaII CCGG 1 cut(s) 271
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 3 cut(s) 13, 173, 190
Hpy188I TCNGA 3 cut(s) 154, 160, 282
Hpy188III TCNNGA 2 cut(s) 114, 343
Hpy8I GTNNAC 3 cut(s) 13, 173, 190
Hpy99I CGWCG 2 cut(s) 120, 286
HpyCH4III ACNGT 3 cut(s) 170, 194, 340
HpyCH4IV ACGT 2 cut(s) 276, 284
HpyCH4V TGCA 3 cut(s) 288, 329, 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 363
HpyF3I CTNAG 1 cut(s) 151
HpySE526I ACGT 2 cut(s) 276, 284
Hsp92I GRCGYC 1 cut(s) 355
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 1 cut(s) 355
KasI GGCGCC 1 cut(s) 354
Kzo9I GATC 1 cut(s) 394
LpnPI CCDG 3 cut(s) 138, 284, 372
Lsp1109I GCAGC 3 cut(s) 221, 300, 353
LweI GCATC 2 cut(s) 210, 246
MaeI CTAG 3 cut(s) 35, 377, 402
MaeII ACGT 2 cut(s) 276, 284
MaeIII GTNAC 2 cut(s) 30, 127
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MfeI CAATTG 1 cut(s) 133
MluCI AATT 5 cut(s) 70, 81, 95, 133, 421
Mly113I GGCGCC 1 cut(s) 355
MlyI GAGTC 3 cut(s) 149, 156, 210
MmeI TCCRAC 2 cut(s) 183, 305
MnlI CCTC 4 cut(s) 36, 368, 384, 408
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 1 cut(s) 271
MunI CAATTG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 256, 363
NarI GGCGCC 1 cut(s) 355
NcoI CCATGG 1 cut(s) 300
NdeII GATC 1 cut(s) 394
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 356
PkrI GCNGC 4 cut(s) 211, 290, 365, 368
PleI GAGTC 3 cut(s) 149, 155, 209
PluTI GGCGCC 1 cut(s) 358
PpsI GAGTC 3 cut(s) 149, 155, 209
PspN4I GGNNCC 1 cut(s) 356
RsaI GTAC 2 cut(s) 275, 296
RsaNI GTAC 2 cut(s) 274, 295
SatI GCNGC 4 cut(s) 210, 289, 364, 367
Sau3AI GATC 1 cut(s) 394
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 3 cut(s) 149, 156, 210
SetI ASST 5 cut(s) 28, 279, 287, 310, 382
SfaNI GCATC 2 cut(s) 210, 246
SfoI GGCGCC 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 5 cut(s) 70, 81, 95, 133, 421
SsiI CCGC 3 cut(s) 5, 76, 364
SspDI GGCGCC 1 cut(s) 354
SspMI CTAG 3 cut(s) 35, 377, 402
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 170, 194, 340
TaiI ACGT 2 cut(s) 279, 287
TaqI TCGA 4 cut(s) 107, 115, 140, 218
TasI AATT 5 cut(s) 70, 81, 95, 133, 421
TatI WGTACW 1 cut(s) 294
TauI GCSGC 1 cut(s) 366
TseI GCWGC 3 cut(s) 209, 288, 366
XapI RAATTY 2 cut(s) 81, 421
XspI CTAG 3 cut(s) 35, 377, 402
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.