AT3G09580

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015456
Physical Location & Seq
Reverse (-)
2942158 .. 2944457
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09580.1

Sequence Viewer

Length: 1434 bp
ATGCCCGTGGCGATCTCTCTCCCAACCTCATCTACTTCTCATTTCTTCCCTCGCCGCCGCGGCCATGCAAATCACCGATATCAACGCTTTTCCGGAGCTCAATCTTCCACGGAAGATCCGTACATTCGGAAGAATCAAACTGGCGTCATCATCATCGGCGCTGGACTCGCTGGTTTAGCCGCCGCAAACCAGCTCACCTCCAAACGAATCCCTTTCCTACTCCTCGAAGCTTCCGATGGCGTCGGCGGACGCGTCCGTACAGATATCGTCGACGGCTTCTTTCTCGACAGAGGATTTCAGATTTTCATCACCGCGTACCCCGAAGCTAAAAAGCTTCTAGATTATGAAGCACTGGATCTGCAGAGATTCTACGCCGGAGCTAAGGTGTTTTACGGCGGTAAATTTCACACCGTCGCTGATCCTCTCCGACATTTTTGGGATTCGGTGGCATCTCTCGCGAATCCGATCGGATCCGTCGTTGACAAAGGGCTTATCGCTTTGACGAGAGCTAGGGTTCTAATCAAGTCAGACGAAGAGATATTGACTGCCGCCGATGAAGTTCCCACCATTGATCTCCTCCGTAAGATCGGTTTCTCCGAAACGATTCTTGATCGGTTCTTCCGACCATTCTTCGGCGGAATTTTCTTCGACAGAGACCTCGAGACGACCTCGAAGCTCTTCGATTTCGTTTTCCGGTGTCTTGCTCTCGGAGAAAACACACTTCCAGCCATGGGAATCGGAGAAATCTCGAACCAGTTGGCAGCGAAGTTACCCGCTAAGTCCGTCTTGTTGAACACAAGGGTCGCTTCTATTGAGTATCCAAATGGATCGGGTTCGGATCCACCTAGCGTGAGGCTCCAAGACGGCAGCGTTATGAAGGCAGAGCTAGGTGTCATAATCGCCGTCGAGCAACCGGAAGTGAATAAGCTTCTCGATGGGATCAGAGACCCGGTTATAACAAAACCAGCTCGGAGCACTATTTGTCTTTACTTCACAGCTGAACCGAACCAAATACCGGTACAAGACCCGGTTCTATTTCTCAACGGGTCAAATTCCGGTATAATCAACAACATGTTCTTCGCTACAAACGTTGCTCGGACATACGCGCCACCGGGAAAGGCTCTGGTTTCGGTATCATTGATCGGATTGTTTGAGGATAGAACCGATGATGATTTAGCAGCAGAAGTTCTTAGAGAACTCTCTGGTTGGTTTGGTGAGTCTCCGGTTATGTCATGGAAACATTTGAAAACATACCGGATCCAATTCGCTCAGCCTAACCAATGTCCACCCACTGATTTGGTCAAGAGTCCTCGGGTCGGGTCGGGTCTTTACTTGAGCGGTGATTACATGACTTCTGCTACATTTGATGGAGCTTTGGTCTCTGGGAGACGAGCCGTGGAAGTTTTGCTACGAGAAACGGGACTAATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase

Protein Analysis

477

Amino Acids

52.26

Weight (kDa)

7.03

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_8 PF13450 51 - 115 6.4e-14 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 56 - 469 4.1e-61 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015456)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09580
fragaria_vesca FvH4_3g40270
malus_domestica MD03G1054600.v1.1
prunus_persica Prupe.6G043200_v2.0.a1
pyrus_communis pycom03g04330
rosa_chinensis RchiOBHm_Chr5g0072531
rosa_laevigata RLG00000036310
rosa_multiflora Rmu_sc0002088.1_g000015 Rmu_sc0007873.1_g000006
rosa_roxburghii Rroxscaffold_1G00008610
rosa_rugosa Rorug05G0418900
rosa_samantha Rh5AG475400 Rh5BG495600 Rh5CG519400 Rh5DG507800
rosa_wichuraiana Rw5G044160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AccBSI CCGCTC 1 cut(s) 1338
AccI GTMKAC 1 cut(s) 270
AccII CGCG 5 cut(s) 60, 252, 314, 458, 1106
AccIII TCCGGA 1 cut(s) 92
AclI AACGTT 1 cut(s) 1089
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 3 cut(s) 401, 639, 1051
AcyI GRCGYC 2 cut(s) 144, 240
AfaI GTAC 4 cut(s) 122, 259, 317, 1020
AfiI CCNNNNNNNGG 4 cut(s) 632, 731, 1015, 1316
AflIII ACRYGT 2 cut(s) 250, 1071
AgeI ACCGGT 1 cut(s) 1015
AgsI TTSAA 2 cut(s) 793, 1246
Alw21I GWGCWC 2 cut(s) 100, 977
Alw26I GTCTC 6 cut(s) 648, 656, 939, 1224, 1381, 1384
Ama87I CYCGRG 2 cut(s) 659, 1311
Aor13HI TCCGGA 1 cut(s) 92
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 3 cut(s) 761, 867, 1178
ApoI RAATTY 3 cut(s) 401, 639, 1051
AsiGI ACCGGT 1 cut(s) 1015
Asp700I GAANNNNTTC 2 cut(s) 603, 677
AspLEI GCGC 2 cut(s) 161, 1108
AsuC2I CCSGG 3 cut(s) 950, 1028, 1113
AsuHPI GGTGA 5 cut(s) 65, 187, 301, 1226, 1352
AvaI CYCGRG 2 cut(s) 659, 1311
BamHI GGATCC 3 cut(s) 470, 838, 1257
BanII GRGCYC 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 1392, 1424
Bbv12I GWGCWC 2 cut(s) 100, 977
BbvI GCAGC 3 cut(s) 773, 879, 1190
BccI CCATC 3 cut(s) 230, 929, 1361
BceAI ACGGC 5 cut(s) 289, 409, 880, 887, 1379
BciVI GTATCC 1 cut(s) 828
BcnI CCSGG 3 cut(s) 950, 1028, 1113
BcoDI GTCTC 6 cut(s) 648, 656, 939, 1224, 1381, 1384
BfaI CTAG 4 cut(s) 338, 510, 846, 887
BfmI CTRYAG 1 cut(s) 359
BfoI RGCGCY 1 cut(s) 162
BfuI GTATCC 1 cut(s) 828
BglI GCCNNNNNGGC 1 cut(s) 60
BisI GCNGC 9 cut(s) 55, 58, 61, 180, 183, 549, 762, 868, 1179
BlpI GCTNAGC 1 cut(s) 1269
BlsI GCNGC 9 cut(s) 56, 59, 62, 181, 184, 550, 763, 869, 1180
Bme1390I CCNGG 3 cut(s) 950, 1028, 1113
BmeT110I CYCGRG 2 cut(s) 659, 1311
BmiI GGNNCC 4 cut(s) 472, 840, 857, 1259
BmrFI CCNGG 3 cut(s) 950, 1028, 1113
BmsI GCATC 1 cut(s) 458
BplI GAGNNNNNCTC 2 cut(s) 653, 685
Bpu10I CCTNAGC 1 cut(s) 381
Bpu1102I GCTNAGC 1 cut(s) 1269
BpuEI CTTGAG 1 cut(s) 1354
BpuMI CCSGG 3 cut(s) 950, 1028, 1113
BsaBI GATNNNNATC 1 cut(s) 305
BsaHI GRCGYC 2 cut(s) 144, 240
BsaI GGTCTC 3 cut(s) 648, 939, 1384
BsaJI CCNNGG 6 cut(s) 6, 58, 108, 729, 1310, 1395
BsaWI WCCGGW 7 cut(s) 92, 693, 913, 1015, 1055, 1222, 1254
BsaXI ACNNNNNCTCC 4 cut(s) 369, 399, 1362, 1392
Bsc4I CCNNNNNNNGG 4 cut(s) 632, 731, 1015, 1316
Bse118I RCCGGY 1 cut(s) 1015
Bse1I ACTGG 3 cut(s) 145, 357, 754
Bse8I GATNNNNATC 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 92
BseDI CCNNGG 6 cut(s) 6, 58, 108, 729, 1310, 1395
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 4 cut(s) 632, 731, 1015, 1316
BseMII CTCAG 1 cut(s) 1283
BseNI ACTGG 3 cut(s) 145, 357, 754
BseRI GAGGAG 2 cut(s) 212, 566
BseXI GCAGC 3 cut(s) 773, 879, 1190
Bsh1236I CGCG 5 cut(s) 60, 252, 314, 458, 1106
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 63
BshTI ACCGGT 1 cut(s) 1015
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 2 cut(s) 100, 977
BsiHKCI CYCGRG 2 cut(s) 659, 1311
BslI CCNNNNNNNGG 4 cut(s) 632, 731, 1015, 1316
BsmAI GTCTC 6 cut(s) 648, 656, 939, 1224, 1381, 1384
BsmBI CGTCTC 2 cut(s) 656, 1381
BsnI GGCC 1 cut(s) 63
Bso31I GGTCTC 3 cut(s) 648, 939, 1384
BsoBI CYCGRG 2 cut(s) 659, 1311
Bsp1286I GDGCHC 2 cut(s) 100, 977
Bsp13I TCCGGA 1 cut(s) 92
Bsp1720I GCTNAGC 1 cut(s) 1269
Bsp19I CCATGG 1 cut(s) 729
Bsp68I TCGCGA 1 cut(s) 458
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 1282
BspEI TCCGGA 1 cut(s) 92
BspFNI CGCG 5 cut(s) 60, 252, 314, 458, 1106
BspLI GGNNCC 4 cut(s) 472, 840, 857, 1259
BspMAI CTGCAG 1 cut(s) 363
BspQI GCTCTTC 1 cut(s) 683
BspTNI GGTCTC 3 cut(s) 648, 939, 1384
BsrBI CCGCTC 1 cut(s) 1338
BsrFI RCCGGY 1 cut(s) 1015
BsrI ACTGG 3 cut(s) 145, 357, 754
BssAI RCCGGY 1 cut(s) 1015
BssECI CCNNGG 6 cut(s) 6, 58, 108, 729, 1310, 1395
BssNI GRCGYC 2 cut(s) 144, 240
BssT1I CCWWGG 1 cut(s) 729
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 2 cut(s) 528, 683
BstACI GRCGYC 2 cut(s) 144, 240
BstDEI CTNAG 4 cut(s) 381, 777, 1190, 1269
BstDSI CCRYGG 5 cut(s) 6, 58, 108, 729, 1395
BstFNI CGCG 5 cut(s) 60, 252, 314, 458, 1106
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 161, 1108
BstMAI GTCTC 6 cut(s) 648, 656, 939, 1224, 1381, 1384
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 4 cut(s) 60, 167, 176, 455
BstNSI RCATGY 1 cut(s) 1075
BstSCI CCNGG 3 cut(s) 948, 1026, 1111
BstSFI CTRYAG 1 cut(s) 359
BstUI CGCG 5 cut(s) 60, 252, 314, 458, 1106
BstV1I GCAGC 3 cut(s) 773, 879, 1190
BstX2I RGATCY 5 cut(s) 115, 355, 470, 838, 1257
BstXI CCANNNNNNTGG 1 cut(s) 1297
BstYI RGATCY 5 cut(s) 115, 355, 470, 838, 1257
BsuI GTATCC 1 cut(s) 828
BsuRI GGCC 1 cut(s) 63
BtgI CCRYGG 5 cut(s) 6, 58, 108, 729, 1395
BtsIMutI CAGTG 2 cut(s) 350, 1290
BtuMI TCGCGA 1 cut(s) 458
CfoI GCGC 2 cut(s) 161, 1108
Cfr10I RCCGGY 1 cut(s) 1015
Cfr42I CCGCGG 1 cut(s) 61
CseI GACGC 4 cut(s) 133, 229, 241, 258
Csp6I GTAC 4 cut(s) 121, 258, 316, 1019
CspAI ACCGGT 1 cut(s) 1015
CviAII CATG 5 cut(s) 65, 730, 1072, 1233, 1348
CviQI GTAC 4 cut(s) 121, 258, 316, 1019
DdeI CTNAG 4 cut(s) 381, 777, 1190, 1269
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 528, 683
EarI CTCTTC 2 cut(s) 528, 683
EciI GGCGGA 2 cut(s) 261, 651
Ecl136II GAGCTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 100
Eco31I GGTCTC 3 cut(s) 648, 939, 1384
Eco32I GATATC 2 cut(s) 80, 265
Eco53kI GAGCTC 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 659, 1311
EcoICRI GAGCTC 1 cut(s) 98
EcoRV GATATC 2 cut(s) 80, 265
EcoT14I CCWWGG 1 cut(s) 729
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 729
Esp3I CGTCTC 2 cut(s) 656, 1381
FaeI CATG 5 cut(s) 68, 733, 1075, 1236, 1351
FalI AAGNNNNNCTT 4 cut(s) 770, 802, 790, 822
FatI CATG 5 cut(s) 64, 729, 1071, 1232, 1347
FauI CCCGC 1 cut(s) 781
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 9 cut(s) 55, 58, 61, 180, 183, 549, 762, 868, 1179
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 9 cut(s) 55, 58, 61, 180, 183, 549, 762, 868, 1179
FspBI CTAG 4 cut(s) 338, 510, 846, 887
GlaI GCGC 2 cut(s) 160, 1107
GluI GCNGC 9 cut(s) 55, 58, 61, 180, 183, 549, 762, 868, 1179
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 1 cut(s) 63
HgaI GACGC 4 cut(s) 133, 229, 241, 258
HhaI GCGC 2 cut(s) 161, 1108
Hin1I GRCGYC 2 cut(s) 144, 240
Hin1II CATG 5 cut(s) 68, 733, 1075, 1236, 1351
Hin6I GCGC 2 cut(s) 159, 1106
HinP1I GCGC 2 cut(s) 159, 1106
HincII GTYRAC 2 cut(s) 271, 481
HindII GTYRAC 2 cut(s) 271, 481
HindIII AAGCTT 3 cut(s) 228, 332, 926
HphI GGTGA 5 cut(s) 65, 187, 301, 1226, 1352
Hpy166II GTNNAC 3 cut(s) 271, 481, 1286
Hpy188III TCNNGA 9 cut(s) 93, 284, 338, 457, 608, 661, 748, 932, 1303
Hpy8I GTNNAC 3 cut(s) 271, 481, 1286
Hpy99I CGWCG 6 cut(s) 245, 272, 275, 416, 479, 908
HpyAV CCTTC 1 cut(s) 871
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 1089
HpyCH4V TGCA 2 cut(s) 68, 361
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 167, 176, 455
HpyF3I CTNAG 4 cut(s) 381, 777, 1190, 1269
HpySE526I ACGT 1 cut(s) 1089
Hsp92I GRCGYC 2 cut(s) 144, 240
Hsp92II CATG 5 cut(s) 68, 733, 1075, 1236, 1351
HspAI GCGC 2 cut(s) 159, 1106
Kpn2I TCCGGA 1 cut(s) 92
KspI CCGCGG 1 cut(s) 61
LguI GCTCTTC 1 cut(s) 683
LmnI GCTCC 5 cut(s) 95, 377, 861, 972, 1370
Lsp1109I GCAGC 3 cut(s) 773, 879, 1190
LweI GCATC 1 cut(s) 458
MaeI CTAG 4 cut(s) 338, 510, 846, 887
MaeII ACGT 1 cut(s) 1089
MaeIII GTNAC 1 cut(s) 768
MbiI CCGCTC 1 cut(s) 1338
MflI RGATCY 5 cut(s) 115, 355, 470, 838, 1257
MhlI GDGCHC 2 cut(s) 100, 977
MluCI AATT 4 cut(s) 401, 639, 1051, 1262
MluI ACGCGT 1 cut(s) 250
MlyI GAGTC 3 cut(s) 159, 1226, 1315
MmeI TCCRAC 2 cut(s) 451, 646
MroI TCCGGA 1 cut(s) 92
MroXI GAANNNNTTC 2 cut(s) 603, 677
MspA1I CMGCKG 2 cut(s) 60, 998
MspR9I CCNGG 3 cut(s) 950, 1028, 1113
MvnI CGCG 5 cut(s) 60, 252, 314, 458, 1106
MwoI GCNNNNNNNGC 4 cut(s) 60, 167, 176, 455
NciI CCSGG 3 cut(s) 950, 1028, 1113
NcoI CCATGG 1 cut(s) 729
NlaIII CATG 5 cut(s) 68, 733, 1075, 1236, 1351
NlaIV GGNNCC 4 cut(s) 472, 840, 857, 1259
NruI TCGCGA 1 cut(s) 458
NspI RCATGY 1 cut(s) 1075
PaeR7I CTCGAG 1 cut(s) 659
PciI ACATGT 1 cut(s) 1071
PciSI GCTCTTC 1 cut(s) 683
PcsI WCGNNNNNNNCGW 7 cut(s) 116, 231, 249, 474, 594, 619, 1086
PdmI GAANNNNTTC 2 cut(s) 603, 677
PfeI GAWTC 7 cut(s) 133, 207, 366, 440, 460, 604, 735
PinAI ACCGGT 1 cut(s) 1015
PkrI GCNGC 9 cut(s) 56, 59, 62, 181, 184, 550, 763, 869, 1180
Ple19I CGATCG 1 cut(s) 468
PleI GAGTC 3 cut(s) 159, 1225, 1314
PpsI GAGTC 3 cut(s) 159, 1225, 1314
PscI ACATGT 1 cut(s) 1071
PsiI TTATAA 1 cut(s) 956
Psp124BI GAGCTC 1 cut(s) 100
Psp1406I AACGTT 1 cut(s) 1089
PspN4I GGNNCC 4 cut(s) 472, 840, 857, 1259
PstI CTGCAG 1 cut(s) 363
PsuI RGATCY 5 cut(s) 115, 355, 470, 838, 1257
PvuI CGATCG 1 cut(s) 468
PvuII CAGCTG 1 cut(s) 998
RruI TCGCGA 1 cut(s) 458
RsaI GTAC 4 cut(s) 122, 259, 317, 1020
RsaNI GTAC 4 cut(s) 121, 258, 316, 1019
SacI GAGCTC 1 cut(s) 100
SacII CCGCGG 1 cut(s) 61
SalI GTCGAC 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 683
SatI GCNGC 9 cut(s) 55, 58, 61, 180, 183, 549, 762, 868, 1179
SchI GAGTC 3 cut(s) 159, 1226, 1315
ScrFI CCNGG 3 cut(s) 950, 1028, 1113
SduI GDGCHC 2 cut(s) 100, 977
SfaNI GCATC 1 cut(s) 458
SfcI CTRYAG 1 cut(s) 359
Sfr274I CTCGAG 1 cut(s) 659
Sfr303I CCGCGG 1 cut(s) 61
SgrBI CCGCGG 1 cut(s) 61
SgrDI CGTCGACG 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 659, 1333
SmoI CTYRAG 2 cut(s) 659, 1333
Sse9I AATT 4 cut(s) 401, 639, 1051, 1262
SspMI CTAG 4 cut(s) 338, 510, 846, 887
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 3 cut(s) 948, 1026, 1111
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 1092
TasI AATT 4 cut(s) 401, 639, 1051, 1262
TauI GCSGC 6 cut(s) 57, 60, 63, 182, 185, 551
TfiI GAWTC 7 cut(s) 133, 207, 366, 440, 460, 604, 735
TscAI CASTG 2 cut(s) 357, 1297
TseI GCWGC 3 cut(s) 761, 867, 1178
TspDTI ATGAA 4 cut(s) 295, 360, 570, 890
TspGWI ACGGA 6 cut(s) 108, 125, 245, 463, 569, 772
TspRI CASTG 2 cut(s) 357, 1297
XapI RAATTY 3 cut(s) 401, 639, 1051
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 1 cut(s) 1075
XhoI CTCGAG 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 2 cut(s) 603, 677
XspI CTAG 4 cut(s) 338, 510, 846, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.