Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013846

Physical Location & Seq

Genomic Coordinates Forward (+)

2989356 .. 2991664

Gene Structure 2309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGACTGTGATCGATATTCTGACTAGAGTTGACTCGATCTGTAAGAAGTACGACAAGTACGATGTCGACAAACAGCGGGAGGCCAATATCTCCGGCGATGATGCCTTTGCTCGTCTCTATGGAGCTTTCGAAACCCAAATCGAGACCGCTCTCGAGAAAGCTGAACTTGTTACGAAGGAGAAAAACAGGGCTGCTGCTGTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCACGATTGTCAGAGGAAGTTCCCAAGTTGCAAAGACTTGCTGTCAAGCGGGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGAAATGATTTGGTGCTCGCTCTTCCAGCCAGGATTGAAGCCATACCTGATGGGACAGCAGGTGGCCCTAAAAGCACTAGTGCTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAATTTGATTCAGATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAATTCAGGCAGGAGTATGAGATGCGGAAAATAAAACAGGAACAAGGTCTTGACATGATCTCCGAAGGGTTAGATGCTTTGAAGAACATGGCTTCTGATATGAACGAGGAACTGGATAGACAAGTTCCACTGATGGATGAAATCGACACAAAGGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATACCGTGAACCAGCTGAGATCTAGCCGGAACTTCTGTATCGATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAATGTACTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

266

Amino Acids

29.98

Weight (kDa)

5.09

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	209 - 258	1.4e-12	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09740
fragaria_vesca	FvH4_6g15660
malus_domestica	MD04G1100500.v1.1 MD12G1120400.v1.1
prunus_persica	Prupe.6G238700_v2.0.a1
pyrus_communis	pycom04g09550 pycom12g11940
rosa_chinensis	RchiOBHm_Chr3g0469361
rosa_laevigata	RLG00000024356
rosa_multiflora	Rmu_co8487771.1_g000001 Rmu_sc0013047.1_g000010
rosa_roxburghii	Rroxscaffold_6G00411960
rosa_rugosa	Rorug03G0100900
rosa_samantha	Rh3BG173800 Rh3CG164700 Rh3DG201700
rosa_wichuraiana	Rw3G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
Acc36I	ACCTGC	1 cut(s)	365
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	5 cut(s)	76, 147, 220, 280, 520
AclWI	GGATC	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	3 cut(s)	50, 59, 792
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	3 cut(s)	353, 476, 577
AhdI	GACNNNNNGTC	1 cut(s)	272
AhlI	ACTAGT	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	344
AleI	CACNNNNGTG	1 cut(s)	647
AluBI	AGCT	4 cut(s)	125, 161, 307, 712
AluI	AGCT	4 cut(s)	125, 161, 307, 712
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	119, 137
AlwI	GGATC	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	3 cut(s)	81, 289, 379
ApeKI	GCWGC	4 cut(s)	191, 194, 311, 773
ApoI	RAATTY	1 cut(s)	437
AspS9I	GGNCC	3 cut(s)	225, 289, 380
AsuII	TTCGAA	1 cut(s)	129
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	225
BaeI	ACNNNNGTAYC	2 cut(s)	718, 751
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	4 cut(s)	178, 181, 298, 760
BccI	CCATC	3 cut(s)	359, 443, 622
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	119, 137
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	4 cut(s)	24, 393, 492, 720
BfrI	CTTAAG	1 cut(s)	671
BfuAI	ACCTGC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	716
BisI	GCNGC	4 cut(s)	192, 195, 312, 774
BlsI	GCNGC	4 cut(s)	193, 196, 313, 775
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	225
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	225, 289, 380
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	3 cut(s)	91, 507, 559
Bpu14I	TTCGAA	1 cut(s)	129
Bsa29I	ATCGAT	2 cut(s)	12, 738
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	539, 569
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	612
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	346
BseCI	ATCGAT	2 cut(s)	12, 738
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	204, 704
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	1 cut(s)	400
BseXI	GCAGC	4 cut(s)	178, 181, 298, 760
BshFI	GGCC	3 cut(s)	83, 291, 381
BshVI	ATCGAT	2 cut(s)	12, 738
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	93, 223, 724
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	2 cut(s)	119, 137
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	83, 291, 381
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	6 cut(s)	9, 36, 216, 552, 667, 716
BspACI	CCGC	5 cut(s)	76, 147, 220, 280, 520
BspANI	GGCC	3 cut(s)	83, 291, 381
BspCNI	CTCAG	2 cut(s)	205, 705
BspDI	ATCGAT	2 cut(s)	12, 738
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	211
BspQI	GCTCTTC	2 cut(s)	297, 342
BspT104I	TTCGAA	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	6 cut(s)	9, 36, 216, 552, 667, 716
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	7, 703
Bst6I	CTCTTC	2 cut(s)	297, 342
BstAFI	CTTAAG	1 cut(s)	671
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	309, 333
BstDEI	CTNAG	2 cut(s)	213, 713
BstF5I	GGATG	1 cut(s)	637
BstKTI	GATC	6 cut(s)	12, 39, 219, 555, 670, 719
BstMAI	GTCTC	2 cut(s)	119, 137
BstMBI	GATC	6 cut(s)	9, 36, 216, 552, 667, 716
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 209, 341, 387
BstNI	CCWGG	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	344
BstV1I	GCAGC	4 cut(s)	178, 181, 298, 760
BstX2I	RGATCY	2 cut(s)	216, 716
BstYI	RGATCY	2 cut(s)	216, 716
Bsu15I	ATCGAT	2 cut(s)	12, 738
BsuRI	GGCC	3 cut(s)	83, 291, 381
BsuTUI	ATCGAT	2 cut(s)	12, 738
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	623
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	309, 333
Cfr13I	GGNCC	3 cut(s)	225, 289, 380
ClaI	ATCGAT	2 cut(s)	12, 738
Csp6I	GTAC	3 cut(s)	49, 58, 791
CviAII	CATG	2 cut(s)	550, 583
CviQI	GTAC	3 cut(s)	49, 58, 791
DdeI	CTNAG	2 cut(s)	213, 713
DpnI	GATC	6 cut(s)	11, 38, 218, 554, 669, 718
DpnII	GATC	6 cut(s)	9, 36, 216, 552, 667, 716
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	297, 342
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	2 cut(s)	297, 342
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	553, 586
FaiI	YATR	8 cut(s)	120, 359, 513, 551, 584, 596, 778, 784
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	2 cut(s)	549, 582
FauI	CCCGC	2 cut(s)	69, 273
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	192, 195, 312, 774
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	4 cut(s)	192, 195, 312, 774
FspBI	CTAG	4 cut(s)	24, 393, 492, 720
GluI	GCNGC	4 cut(s)	192, 195, 312, 774
HaeIII	GGCC	3 cut(s)	83, 291, 381
HapII	CCGG	3 cut(s)	93, 223, 724
Hin1II	CATG	2 cut(s)	553, 586
HincII	GTYRAC	2 cut(s)	31, 67
HindII	GTYRAC	2 cut(s)	31, 67
HinfI	GANTC	5 cut(s)	32, 403, 443, 479, 488
HpaII	CCGG	3 cut(s)	93, 223, 724
Hpy166II	GTNNAC	4 cut(s)	31, 67, 652, 706
Hpy188I	TCNGA	6 cut(s)	21, 244, 448, 559, 592, 667
Hpy188III	TCNNGA	6 cut(s)	142, 152, 154, 428, 476, 545
Hpy8I	GTNNAC	4 cut(s)	31, 67, 652, 706
HpyAV	CCTTC	2 cut(s)	169, 554
HpyCH4III	ACNGT	2 cut(s)	7, 703
HpyCH4V	TGCA	3 cut(s)	203, 262, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 209, 341, 387
HpyF3I	CTNAG	2 cut(s)	213, 713
Hsp92II	CATG	2 cut(s)	553, 586
Kzo9I	GATC	6 cut(s)	9, 36, 216, 552, 667, 716
LguI	GCTCTTC	2 cut(s)	297, 342
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	4 cut(s)	178, 181, 298, 760
LweI	GCATC	3 cut(s)	91, 507, 559
MaeI	CTAG	4 cut(s)	24, 393, 492, 720
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	6 cut(s)	11, 38, 218, 554, 669, 718
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	6 cut(s)	9, 36, 216, 552, 667, 716
MboII	GAAGA	3 cut(s)	314, 329, 589
MflI	RGATCY	2 cut(s)	216, 716
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	2 cut(s)	437, 497
MlyI	GAGTC	2 cut(s)	26, 397
MnlI	CCTC	6 cut(s)	73, 238, 418, 421, 595, 673
MseI	TTAA	3 cut(s)	285, 672, 693
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	2 cut(s)	76, 712
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	3 cut(s)	93, 223, 724
MspR9I	CCNGG	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	4 cut(s)	200, 209, 341, 387
NdeII	GATC	6 cut(s)	9, 36, 216, 552, 667, 716
NlaIII	CATG	2 cut(s)	553, 586
NspV	TTCGAA	1 cut(s)	129
OliI	CACNNNNGTG	1 cut(s)	647
PaeR7I	CTCGAG	1 cut(s)	152
PaqCI	CACCTGC	1 cut(s)	365
PciSI	GCTCTTC	2 cut(s)	297, 342
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	443, 479, 488
PkrI	GCNGC	4 cut(s)	193, 196, 313, 775
PleI	GAGTC	2 cut(s)	26, 397
PpsI	GAGTC	2 cut(s)	26, 397
Psp6I	CCWGG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	344
PspPI	GGNCC	3 cut(s)	225, 289, 380
PsuI	RGATCY	2 cut(s)	216, 716
PvuII	CAGCTG	1 cut(s)	712
RsaI	GTAC	3 cut(s)	50, 59, 792
RsaNI	GTAC	3 cut(s)	49, 58, 791
RseI	CAYNNNNRTG	1 cut(s)	647
SalI	GTCGAC	1 cut(s)	65
SapI	GCTCTTC	2 cut(s)	297, 342
SaqAI	TTAA	3 cut(s)	285, 672, 693
SatI	GCNGC	4 cut(s)	192, 195, 312, 774
Sau3AI	GATC	6 cut(s)	9, 36, 216, 552, 667, 716
Sau96I	GGNCC	3 cut(s)	225, 289, 380
SchI	GAGTC	2 cut(s)	26, 397
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	9 cut(s)	127, 163, 309, 364, 379, 544, 651, 665, 714
SfaNI	GCATC	3 cut(s)	91, 507, 559
Sfr274I	CTCGAG	1 cut(s)	152
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	225
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	152, 671
SmoI	CTYRAG	2 cut(s)	152, 671
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	2 cut(s)	437, 497
SsiI	CCGC	5 cut(s)	76, 147, 220, 280, 520
SspMI	CTAG	4 cut(s)	24, 393, 492, 720
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	7, 703
TaqI	TCGA	8 cut(s)	12, 35, 66, 129, 141, 153, 639, 738
TasI	AATT	2 cut(s)	437, 497
TatI	WGTACW	1 cut(s)	790
TfiI	GAWTC	3 cut(s)	443, 479, 488
Tru1I	TTAA	3 cut(s)	285, 672, 693
Tru9I	TTAA	3 cut(s)	285, 672, 693
TscAI	CASTG	1 cut(s)	630
TseI	GCWGC	4 cut(s)	191, 194, 311, 773
TspDTI	ATGAA	4 cut(s)	221, 501, 611, 648
TspRI	CASTG	1 cut(s)	630
Vha464I	CTTAAG	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	4 cut(s)	24, 393, 492, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.