Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013846

Physical Location & Seq

Genomic Coordinates Forward (+)

9770235 .. 9772752

Gene Structure 2518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15660.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAGCGTCATCGAGCTTCTGACGAGAGTCGAGGCGATCTGCAACAAGTACGACCGATACGACATCGAGAAGCACAAGGACTCCAACGTCTCCGGCGACGATGCCTTTGCTCGCCTCTACGCCTCCGTCGATTCCGACATTGAAGCCGCTCTTCAGAAAGCGGAGCTTGCTTCGAAAGAGAAGAGCAGGGCATCTGCAGTTGCTCTGAATGCCGAGATTCGACGGACCAAGGCTCGATTATTGGAAGAGGTTCCAAAGTTGCAGAGGTTGGCTCTAAAGAAGGTTAAGGGGCTTTCATCTGAAGAGTTTGCAGCTCGTAATGATTTGGCTCATGCATTGACAGATAGGATCCAGGATATACCAGATGGCACTCCGGCTGCTCCAAAACAAAGTGGAGGAGGTTGGACAGCTTCAGCTTCTCGTACTGAAATCAAGTTTGATTCCTCTGATGGACGGTTTGATAATGAATTCTTTCAACAAACTGAGGAGTCCAGTCAATTCAGGAATGAGTATGAAATGCGGAGAATGAAGCAGGATCAAGGTTTGGATGTGATATCAGAAGGTTTGGATACGTTGAAAAATATGGCTGGTGATATGAACGAGGAATTTGATCGGCAAGTTCCTTTGATGGATGAGATTGACAGTAAGGTGGACAAGGCATCTTCTGACCTTAAGAATACTAATGTTAGATTGAAAGACACTGTCAACCAGCTGAGGTCCAGCCGGAATTTTTGCATTGATATTGTATTGCTGATTATCATTTTGGGCATTGCTGCCTATTTGTACAATGTTTTGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

268

Amino Acids

30.03

Weight (kDa)

5.25

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09740
fragaria_vesca	FvH4_6g15660
malus_domestica	MD04G1100500.v1.1 MD12G1120400.v1.1
prunus_persica	Prupe.6G238700_v2.0.a1
pyrus_communis	pycom04g09550 pycom12g11940
rosa_chinensis	RchiOBHm_Chr3g0469361
rosa_laevigata	RLG00000024356
rosa_multiflora	Rmu_co8487771.1_g000001 Rmu_sc0013047.1_g000010
rosa_roxburghii	Rroxscaffold_6G00411960
rosa_rugosa	Rorug03G0100900
rosa_samantha	Rh3BG173800 Rh3CG164700 Rh3DG201700
rosa_wichuraiana	Rw3G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	3 cut(s)	147, 161, 520
AclWI	GGATC	3 cut(s)	343, 356, 543
AcsI	RAATTY	3 cut(s)	467, 605, 727
AcuI	CTGAAG	3 cut(s)	137, 321, 396
AfaI	GTAC	3 cut(s)	50, 424, 785
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	5 cut(s)	143, 476, 577, 694, 796
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	6 cut(s)	16, 166, 314, 410, 416, 712
AluI	AGCT	6 cut(s)	16, 166, 314, 410, 416, 712
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	3 cut(s)	343, 356, 543
ApeKI	GCWGC	3 cut(s)	311, 377, 773
ApoI	RAATTY	3 cut(s)	467, 605, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
Asp700I	GAANNNNTTC	2 cut(s)	249, 471
AspS9I	GGNCC	2 cut(s)	225, 717
AsuHPI	GGTGA	1 cut(s)	602
AsuII	TTCGAA	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	225, 717
BamHI	GGATCC	1 cut(s)	348
BbvCI	CCTCAGC	1 cut(s)	713
BbvI	GCAGC	3 cut(s)	323, 364, 760
BccI	CCATC	3 cut(s)	359, 443, 622
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BciT130I	CCWGG	1 cut(s)	353
BciVI	GTATCC	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	94
BfmI	CTRYAG	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	4 cut(s)	147, 312, 378, 774
BlsI	GCNGC	4 cut(s)	148, 313, 379, 775
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	2 cut(s)	225, 717
BmgT120I	GGNCC	2 cut(s)	225, 717
BmiI	GGNNCC	2 cut(s)	252, 350
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	3 cut(s)	91, 200, 668
BoxI	GACNNNNGTC	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
Bpu10I	CCTNAGC	1 cut(s)	713
Bpu14I	TTCGAA	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	553, 637
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	2 cut(s)	474, 704
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	2 cut(s)	411, 500
BseXI	GCAGC	3 cut(s)	323, 364, 760
Bsh1285I	CGRYCG	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	55
BsiSI	CCGG	3 cut(s)	93, 374, 724
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	214
Bsp119I	TTCGAA	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	4 cut(s)	36, 348, 535, 610
BspACI	CCGC	3 cut(s)	147, 161, 520
BspCNI	CTCAG	2 cut(s)	475, 705
BspLI	GGNNCC	2 cut(s)	252, 350
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	3 cut(s)	343, 356, 543
BspQI	GCTCTTC	2 cut(s)	156, 176
BspT104I	TTCGAA	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	671
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	768
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	36, 348, 535, 610
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	3 cut(s)	456, 644, 703
Bst6I	CTCTTC	4 cut(s)	156, 176, 240, 297
BstAFI	CTTAAG	1 cut(s)	671
BstAUI	TGTACA	1 cut(s)	783
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	112, 168
BstDEI	CTNAG	2 cut(s)	483, 713
BstF5I	GGATG	2 cut(s)	553, 637
BstKTI	GATC	4 cut(s)	39, 351, 538, 613
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	4 cut(s)	36, 348, 535, 610
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 209
BstNI	CCWGG	1 cut(s)	353
BstPAI	GACNNNNGTC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	323, 364, 760
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	562
BtsCI	GGATG	2 cut(s)	553, 637
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	2 cut(s)	112, 168
Cfr13I	GGNCC	2 cut(s)	225, 717
Csp6I	GTAC	3 cut(s)	49, 423, 784
CviAII	CATG	1 cut(s)	332
CviQI	GTAC	3 cut(s)	49, 423, 784
DdeI	CTNAG	2 cut(s)	483, 713
DpnI	GATC	4 cut(s)	38, 350, 537, 612
DpnII	GATC	4 cut(s)	36, 348, 535, 610
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	4 cut(s)	156, 176, 240, 297
EarI	CTCTTC	4 cut(s)	156, 176, 240, 297
Eco130I	CCWWGG	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	555
Eco47I	GGWCC	2 cut(s)	225, 717
Eco57I	CTGAAG	3 cut(s)	137, 321, 396
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	351
EcoRV	GATATC	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	335
FaiI	YATR	5 cut(s)	333, 359, 513, 584, 596
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 150, 182
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	147, 312, 378, 774
FokI	GGATG	2 cut(s)	560, 644
Fsp4HI	GCNGC	4 cut(s)	147, 312, 378, 774
GluI	GCNGC	4 cut(s)	147, 312, 378, 774
HapII	CCGG	3 cut(s)	93, 374, 724
Hin1II	CATG	1 cut(s)	335
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	6 cut(s)	27, 80, 131, 217, 440, 488
HpaII	CCGG	3 cut(s)	93, 374, 724
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	652, 706
Hpy188I	TCNGA	8 cut(s)	21, 136, 156, 207, 301, 448, 559, 667
Hpy188III	TCNNGA	2 cut(s)	67, 502
Hpy8I	GTNNAC	2 cut(s)	652, 706
Hpy99I	CGWCG	3 cut(s)	101, 131, 225
HpyAV	CCTTC	2 cut(s)	274, 554
HpyCH4III	ACNGT	3 cut(s)	456, 644, 703
HpyCH4IV	ACGT	2 cut(s)	87, 572
HpyCH4V	TGCA	6 cut(s)	42, 197, 262, 311, 335, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 209
HpyF3I	CTNAG	2 cut(s)	483, 713
HpySE526I	ACGT	2 cut(s)	87, 572
Hsp92II	CATG	1 cut(s)	335
Kzo9I	GATC	4 cut(s)	36, 348, 535, 610
LguI	GCTCTTC	2 cut(s)	156, 176
LmnI	GCTCC	2 cut(s)	163, 385
Lsp1109I	GCAGC	3 cut(s)	323, 364, 760
LweI	GCATC	3 cut(s)	91, 200, 668
MaeII	ACGT	2 cut(s)	87, 572
MalI	GATC	4 cut(s)	38, 350, 537, 612
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	4 cut(s)	36, 348, 535, 610
MboII	GAAGA	5 cut(s)	143, 193, 257, 314, 654
MflI	RGATCY	1 cut(s)	348
MluCI	AATT	4 cut(s)	467, 497, 605, 727
MlyI	GAGTC	3 cut(s)	36, 74, 497
MmeI	TCCRAC	3 cut(s)	108, 159, 383
Mph1103I	ATGCAT	1 cut(s)	337
MroXI	GAANNNNTTC	2 cut(s)	249, 471
MseI	TTAA	2 cut(s)	285, 672
MspA1I	CMGCKG	1 cut(s)	712
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	3 cut(s)	93, 374, 724
MspR9I	CCNGG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	2 cut(s)	167, 209
NdeII	GATC	4 cut(s)	36, 348, 535, 610
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	2 cut(s)	252, 350
NmeAIII	GCCGAG	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	173
PciSI	GCTCTTC	2 cut(s)	156, 176
PcsI	WCGNNNNNNNCGW	3 cut(s)	57, 93, 126
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	2 cut(s)	249, 471
PfeI	GAWTC	3 cut(s)	131, 217, 440
PflFI	GACNNNGTC	1 cut(s)	701
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	4 cut(s)	148, 313, 379, 775
PleI	GAGTC	3 cut(s)	35, 74, 496
PpsI	GAGTC	3 cut(s)	35, 74, 496
PshAI	GACNNNNGTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	252, 350
PspPI	GGNCC	2 cut(s)	225, 717
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	348
PsyI	GACNNNGTC	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	712
RsaI	GTAC	3 cut(s)	50, 424, 785
RsaNI	GTAC	3 cut(s)	49, 423, 784
SapI	GCTCTTC	2 cut(s)	156, 176
SaqAI	TTAA	2 cut(s)	285, 672
SatI	GCNGC	4 cut(s)	147, 312, 378, 774
Sau3AI	GATC	4 cut(s)	36, 348, 535, 610
Sau96I	GGNCC	2 cut(s)	225, 717
SchI	GAGTC	3 cut(s)	36, 74, 497
ScrFI	CCNGG	1 cut(s)	353
SfaNI	GCATC	3 cut(s)	91, 200, 668
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	173
SinI	GGWCC	2 cut(s)	225, 717
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	4 cut(s)	467, 497, 605, 727
SsiI	CCGC	3 cut(s)	147, 161, 520
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	3 cut(s)	456, 644, 703
TaiI	ACGT	2 cut(s)	90, 575
TaqI	TCGA	7 cut(s)	12, 30, 66, 129, 173, 220, 235
TaqII	GACCGA	1 cut(s)	69
TasI	AATT	4 cut(s)	467, 497, 605, 727
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	3 cut(s)	131, 217, 440
Tru1I	TTAA	2 cut(s)	285, 672
Tru9I	TTAA	2 cut(s)	285, 672
TscAI	CASTG	1 cut(s)	706
TseI	GCWGC	3 cut(s)	311, 377, 773
TspDTI	ATGAA	5 cut(s)	285, 480, 528, 542, 611
TspGWI	ACGGA	2 cut(s)	115, 238
TspRI	CASTG	1 cut(s)	706
Tth111I	GACNNNGTC	1 cut(s)	701
Vha464I	CTTAAG	1 cut(s)	671
VpaK11BI	GGWCC	2 cut(s)	225, 717
XapI	RAATTY	3 cut(s)	467, 605, 727
XmnI	GAANNNNTTC	2 cut(s)	249, 471
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.