Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0013846

Physical Location & Seq

Genomic Coordinates Forward (+)

14911285 .. 14914639

Gene Structure 3355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG173800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGCGTCATCGAACTTCTGACGAGAGTCGAGGCGATCTGCAACAAGTACGACCGATACGACATCGACAAGCAGAAGGACTCCAACGTCTCCGGCGCCGATGCCTTCGCTCGCCTCTACTCCGCCGTCGAGTCCGACATTGAAGCCGCTCTTCAGAAAGCGGAGCTTGCTTCGAAAGAGAAGAGCAGGGCATCTGCAGTTGCTCTGAATGCCGAGATTCGCCGGACCAAGGCTCGATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAGAAGGTCAAAGGGCTTTCATCCGAAGAGTTTGCTGCTCGTAATGATTTGGTTCATGCATTGCCAGATAGGATTCAAGATATACCAGATGGGGCTCCGGCTGCGCCAAAACAAACTGGAGGAGGGTGGACAGCTTCAGCTTCCCGTACTGAAATCAAGTTCGATTCTTCTGATGGACGGTTTGATAATGAATTCTTCCAACAATCTGAGGAGTCCAGTCAATTCAGGAATGAGTATGAAATGCGGAGAATTAAGCAGGATCAAGGTCTGGATGTGATTTCAGAAGGTTTGGATACCTTGAAAAATATGGCTGGTGATATGAACGAGGAGTTTGATCGGCAAGTTCCTTTGATGGATGAGATTGACAGTAAGGTGGACAAGGCAGCCTCTGACCTTAAGAATACTAATGTTAGACTGAAAGACACTGTCAACCAGGTGATATACTGCAACATCGTTAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

246

Amino Acids

27.57

Weight (kDa)

4.99

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09740
fragaria_vesca	FvH4_6g15660
malus_domestica	MD04G1100500.v1.1 MD12G1120400.v1.1
prunus_persica	Prupe.6G238700_v2.0.a1
pyrus_communis	pycom04g09550 pycom12g11940
rosa_chinensis	RchiOBHm_Chr3g0469361
rosa_laevigata	RLG00000024356
rosa_multiflora	Rmu_co8487771.1_g000001 Rmu_sc0013047.1_g000010
rosa_roxburghii	Rroxscaffold_6G00411960
rosa_rugosa	Rorug03G0100900
rosa_samantha	Rh3BG173800 Rh3CG164700 Rh3DG201700
rosa_wichuraiana	Rw3G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	4 cut(s)	123, 147, 161, 520
AclWI	GGATC	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	2 cut(s)	137, 396
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	50, 424
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	4 cut(s)	143, 245, 353, 577
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	3 cut(s)	166, 410, 416
AluI	AGCT	3 cut(s)	166, 410, 416
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	543
AlwNI	CAGNNNCTG	1 cut(s)	665
ApeKI	GCWGC	3 cut(s)	311, 377, 659
ApoI	RAATTY	1 cut(s)	467
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	2 cut(s)	98, 382
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	602, 724
AsuII	TTCGAA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	298, 364, 671
BccI	CCATC	3 cut(s)	359, 443, 622
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	1 cut(s)	710
BciVI	GTATCC	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	94
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	4 cut(s)	147, 312, 378, 660
BlsI	GCNGC	4 cut(s)	148, 313, 379, 661
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	3 cut(s)	97, 252, 372
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	2 cut(s)	91, 200
BoxI	GACNNNNGTC	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	397, 492
Bse3DI	GCAATG	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	3 cut(s)	296, 553, 637
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	2 cut(s)	397, 492
BseRI	GAGGAG	3 cut(s)	411, 500, 617
BseXI	GCAGC	3 cut(s)	298, 364, 671
Bsh1285I	CGRYCG	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	55
BsiSI	CCGG	3 cut(s)	93, 223, 374
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	214
Bsp119I	TTCGAA	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	36, 535, 610
BspACI	CCGC	4 cut(s)	123, 147, 161, 520
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	3 cut(s)	97, 252, 372
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	543
BspQI	GCTCTTC	2 cut(s)	156, 176
BspT104I	TTCGAA	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	95
BspTI	CTTAAG	1 cut(s)	671
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	397, 492
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	3 cut(s)	36, 535, 610
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	3 cut(s)	456, 644, 703
Bst6I	CTCTTC	4 cut(s)	156, 176, 240, 297
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	671
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	112, 168
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	296, 553, 637
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	98, 382
BstKTI	GATC	3 cut(s)	39, 538, 613
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	36, 535, 610
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 209, 377
BstNI	CCWGG	1 cut(s)	710
BstPAI	GACNNNNGTC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	298, 364, 671
BsuI	GTATCC	1 cut(s)	562
BtsCI	GGATG	3 cut(s)	296, 553, 637
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	2 cut(s)	112, 168
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	2 cut(s)	98, 382
Cfr13I	GGNCC	1 cut(s)	225
CsiI	ACCWGGT	1 cut(s)	708
Csp6I	GTAC	2 cut(s)	49, 423
CviAII	CATG	1 cut(s)	332
CviQI	GTAC	2 cut(s)	49, 423
DdeI	CTNAG	1 cut(s)	483
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	3 cut(s)	38, 537, 612
DpnII	GATC	3 cut(s)	36, 535, 610
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	4 cut(s)	156, 176, 240, 297
EarI	CTCTTC	4 cut(s)	156, 176, 240, 297
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	137, 396
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	373
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	335
FaiI	YATR	6 cut(s)	333, 359, 513, 584, 596, 718
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 150, 182
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	147, 312, 378, 660
FokI	GGATG	3 cut(s)	283, 560, 644
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	4 cut(s)	147, 312, 378, 660
GlaI	GCGC	2 cut(s)	97, 381
GluI	GCNGC	4 cut(s)	147, 312, 378, 660
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	99
HapII	CCGG	3 cut(s)	93, 223, 374
HhaI	GCGC	2 cut(s)	98, 382
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	2 cut(s)	96, 380
HinP1I	GCGC	2 cut(s)	96, 380
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	7 cut(s)	27, 80, 131, 217, 349, 440, 488
HpaII	CCGG	3 cut(s)	93, 223, 374
HphI	GGTGA	2 cut(s)	602, 724
Hpy166II	GTNNAC	3 cut(s)	405, 652, 706
Hpy188I	TCNGA	9 cut(s)	21, 136, 156, 207, 301, 448, 484, 559, 667
Hpy188III	TCNNGA	3 cut(s)	353, 502, 545
Hpy8I	GTNNAC	3 cut(s)	405, 652, 706
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	4 cut(s)	70, 115, 274, 554
HpyCH4III	ACNGT	3 cut(s)	456, 644, 703
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	5 cut(s)	42, 197, 262, 335, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 209, 377
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	2 cut(s)	96, 380
KasI	GGCGCC	1 cut(s)	95
Kzo9I	GATC	3 cut(s)	36, 535, 610
LguI	GCTCTTC	2 cut(s)	156, 176
LmnI	GCTCC	2 cut(s)	163, 376
Lsp1109I	GCAGC	3 cut(s)	298, 364, 671
LweI	GCATC	2 cut(s)	91, 200
MabI	ACCWGGT	1 cut(s)	708
MaeII	ACGT	1 cut(s)	87
MalI	GATC	3 cut(s)	38, 537, 612
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	3 cut(s)	36, 535, 610
MboII	GAAGA	7 cut(s)	143, 193, 257, 289, 314, 435, 463
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	4 cut(s)	467, 497, 525, 733
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	4 cut(s)	36, 74, 140, 497
MmeI	TCCRAC	3 cut(s)	108, 159, 499
MnlI	CCTC	8 cut(s)	25, 125, 241, 389, 392, 478, 595, 673
Mph1103I	ATGCAT	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	528, 672, 732
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	3 cut(s)	93, 223, 374
MspR9I	CCNGG	1 cut(s)	710
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	3 cut(s)	167, 209, 377
NarI	GGCGCC	1 cut(s)	96
NdeII	GATC	3 cut(s)	36, 535, 610
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	3 cut(s)	97, 252, 372
NmeAIII	GCCGAG	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	173
PciSI	GCTCTTC	2 cut(s)	156, 176
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	217, 349, 440
PflFI	GACNNNGTC	1 cut(s)	701
PkrI	GCNGC	4 cut(s)	148, 313, 379, 661
PleI	GAGTC	4 cut(s)	35, 74, 139, 496
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	4 cut(s)	35, 74, 139, 496
PshAI	GACNNNNGTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	3 cut(s)	97, 252, 372
PspPI	GGNCC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	665
PsyI	GACNNNGTC	1 cut(s)	701
RsaI	GTAC	2 cut(s)	50, 424
RsaNI	GTAC	2 cut(s)	49, 423
SapI	GCTCTTC	2 cut(s)	156, 176
SaqAI	TTAA	3 cut(s)	528, 672, 732
SatI	GCNGC	4 cut(s)	147, 312, 378, 660
Sau3AI	GATC	3 cut(s)	36, 535, 610
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	4 cut(s)	36, 74, 140, 497
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	1 cut(s)	373
SexAI	ACCWGGT	1 cut(s)	708
SfaNI	GCATC	2 cut(s)	91, 200
SfcI	CTRYAG	1 cut(s)	195
SfoI	GGCGCC	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	173
SinI	GGWCC	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	4 cut(s)	467, 497, 525, 733
SsiI	CCGC	4 cut(s)	123, 147, 161, 520
SspDI	GGCGCC	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	3 cut(s)	456, 644, 703
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	7 cut(s)	12, 30, 66, 129, 173, 235, 438
TaqII	GACCGA	1 cut(s)	69
TasI	AATT	4 cut(s)	467, 497, 525, 733
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	3 cut(s)	217, 349, 440
Tru1I	TTAA	3 cut(s)	528, 672, 732
Tru9I	TTAA	3 cut(s)	528, 672, 732
TscAI	CASTG	1 cut(s)	706
TseI	GCWGC	3 cut(s)	311, 377, 659
TspDTI	ATGAA	5 cut(s)	285, 320, 480, 528, 611
TspRI	CASTG	1 cut(s)	706
Tth111I	GACNNNGTC	1 cut(s)	701
Vha464I	CTTAAG	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.