Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013846

Physical Location & Seq

Genomic Coordinates Forward (+)

7899458 .. 7900429

Gene Structure 972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0100900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCAATCTTCCCACCTGATTTTGCTCATAAGGTACTGTGTATCCCTCTCGGTAGAAGACTATTGTGTGATAAGCCTTGTTGGAGTCCTGAAAAAAAAAGGCTTTTATTCAGTTAAAACTGCTTACTGGATTGCTAGGACAAAAGTGCTAGAACATGTTCTGGCCTCTACCTCTCAGGGAGACCCGTTTAAAGAATTATGGCGGCGAGTTTGGAAGGCAAGGGTGCCAGGAAAAGTTCAAATTTGTATATGGCGTGCTTGCTCAAATCTATTGCCTACTAGAGCTCAGCTAACTACTAGAGGCTACATGGGTGATCTCCATTGTCTTCTATGTTCTCACAATTATGAAGACATTTCCCATGTCTTATGCAAATGTCCTACTGCAGCTGAGATACTAAGTGCACCCCCTTTTAATTTGGGTAGAAGTTTACTGCCCCATATTGAGTTGAAGGAATGGTTACTTGACCATGCTCTACACTTAAAGAAGGAGGTGTTTGCTAACCTCCTGATGGTTCTGTGGGCCTTATGGAAAAACAGGAATAATATGCTATGGAATAATACAAAGCAATCTCCTGATAATTTGGTCTTAGCTTGGCTAGAGGAATTTGGCAAGGCAAACCAAGTCGATCACTCTGCCCATCCAAAGCAGAAGCAATCTTGGCACCCGGCAGCTGCAGGAATCTGGAAGCTCAATGTTGATGGTAGCTTCCTTCCTACTATTGATCACGGAGGGGTGGGTGGAGTCCTCCGAGATGACACAGGAAAGTTTCGGGCTACTTTTGTAACTCCTATACCAGCTGTTGCCTCTGCAAGACAGGTGGAACTATTTGCTATAAGGGAGGGCTTGAAAATGGTGTCAACACTGCAAGTTAGTAATATCATCATCGAAACAGACTGCTTGGAAGCTGTATCTAGCATTGAGAATGCACAGTTCACTTATGTAAATGATGAGGGAATTATTGATGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

323

Amino Acids

36.38

Weight (kDa)

8.32

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	36 - 130	8.1e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	231 - 309	2.1e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09740
fragaria_vesca	FvH4_6g15660
malus_domestica	MD04G1100500.v1.1 MD12G1120400.v1.1
prunus_persica	Prupe.6G238700_v2.0.a1
pyrus_communis	pycom04g09550 pycom12g11940
rosa_chinensis	RchiOBHm_Chr3g0469361
rosa_laevigata	RLG00000024356
rosa_multiflora	Rmu_co8487771.1_g000001 Rmu_sc0013047.1_g000010
rosa_roxburghii	Rroxscaffold_6G00411960
rosa_rugosa	Rorug03G0100900
rosa_samantha	Rh3BG173800 Rh3CG164700 Rh3DG201700
rosa_wichuraiana	Rw3G014150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	223, 660
AciI	CCGC	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	240, 602
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	508
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	239, 448, 847
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	9 cut(s)	284, 289, 386, 590, 671, 688, 705, 797, 905
AluI	AGCT	9 cut(s)	284, 289, 386, 590, 671, 688, 705, 797, 905
Alw21I	GWGCWC	2 cut(s)	286, 403
Alw26I	GTCTC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	399
AoxI	GGCC	2 cut(s)	162, 519
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	3 cut(s)	383, 668, 671
ApoI	RAATTY	2 cut(s)	240, 602
Asp700I	GAANNNNTTC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	519
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	403
BanI	GGYRCC	2 cut(s)	223, 660
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	3 cut(s)	63, 317, 354
Bbv12I	GWGCWC	2 cut(s)	286, 403
BbvI	GCAGC	3 cut(s)	395, 658, 680
BccI	CCATC	3 cut(s)	502, 645, 692
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	1 cut(s)	228
BciVI	GTATCC	1 cut(s)	52
BclI	TGATCA	1 cut(s)	721
BcnI	CCSGG	1 cut(s)	665
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	6 cut(s)	135, 149, 279, 297, 596, 912
BfmI	CTRYAG	2 cut(s)	381, 672
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	203, 384, 669, 672
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	4 cut(s)	204, 385, 670, 673
Bme1390I	CCNGG	2 cut(s)	228, 665
BmgT120I	GGNCC	1 cut(s)	519
BmiI	GGNNCC	2 cut(s)	225, 662
BmrFI	CCNGG	2 cut(s)	228, 665
BpiI	GAAGAC	3 cut(s)	63, 317, 354
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMII	CTCAG	3 cut(s)	188, 299, 378
BseNI	ACTGG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	3 cut(s)	395, 658, 680
BshFI	GGCC	2 cut(s)	164, 521
BshNI	GGYRCC	2 cut(s)	223, 660
BsiHKAI	GWGCWC	2 cut(s)	286, 403
BsiSI	CCGG	1 cut(s)	665
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	928
BsnI	GGCC	2 cut(s)	164, 521
Bso31I	GGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	286, 403
Bsp143I	GATC	3 cut(s)	313, 625, 721
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	2 cut(s)	164, 521
BspCNI	CTCAG	3 cut(s)	187, 298, 379
BspLI	GGNNCC	2 cut(s)	225, 662
BspMAI	CTGCAG	2 cut(s)	385, 676
BspT107I	GGYRCC	2 cut(s)	223, 660
BspTNI	GGTCTC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	131
BssMI	GATC	3 cut(s)	313, 625, 721
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	38, 930
BstC8I	GCNNGC	2 cut(s)	255, 259
BstDEI	CTNAG	5 cut(s)	174, 285, 387, 395, 586
BstF5I	GGATG	1 cut(s)	637
BstKTI	GATC	3 cut(s)	316, 628, 724
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	313, 625, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	658
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	226, 663
BstSFI	CTRYAG	2 cut(s)	381, 672
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	3 cut(s)	395, 658, 680
BstV2I	GAAGAC	3 cut(s)	63, 317, 354
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	164, 521
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	860
BtsIMutI	CAGTG	1 cut(s)	860
Cac8I	GCNNGC	2 cut(s)	255, 259
Cfr13I	GGNCC	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	798, 833
CviAII	CATG	4 cut(s)	155, 307, 359, 467
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	5 cut(s)	174, 285, 387, 395, 586
DpnI	GATC	3 cut(s)	315, 627, 723
DpnII	GATC	3 cut(s)	313, 625, 721
DraI	TTTAAA	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	286
Eco31I	GGTCTC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	4 cut(s)	158, 310, 362, 470
FatI	CATG	4 cut(s)	154, 306, 358, 466
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	4 cut(s)	203, 384, 669, 672
FokI	GGATG	1 cut(s)	624
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	4 cut(s)	203, 384, 669, 672
FspBI	CTAG	6 cut(s)	135, 149, 279, 297, 596, 912
GluI	GCNGC	4 cut(s)	203, 384, 669, 672
HaeIII	GGCC	2 cut(s)	164, 521
HapII	CCGG	1 cut(s)	665
Hin1II	CATG	4 cut(s)	158, 310, 362, 470
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HinfI	GANTC	3 cut(s)	84, 678, 741
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	4 cut(s)	401, 428, 858, 933
Hpy188I	TCNGA	1 cut(s)	749
Hpy188III	TCNNGA	4 cut(s)	88, 505, 572, 682
Hpy8I	GTNNAC	4 cut(s)	401, 428, 858, 933
HpyAV	CCTTC	4 cut(s)	208, 442, 478, 719
HpyCH4III	ACNGT	2 cut(s)	38, 930
HpyCH4V	TGCA	8 cut(s)	4, 369, 383, 401, 674, 809, 865, 926
HpyF10VI	GCNNNNNNNGC	1 cut(s)	658
HpyF3I	CTNAG	5 cut(s)	174, 285, 387, 395, 586
Hsp92II	CATG	4 cut(s)	158, 310, 362, 470
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	3 cut(s)	313, 625, 721
Lsp1109I	GCAGC	3 cut(s)	395, 658, 680
MaeI	CTAG	6 cut(s)	135, 149, 279, 297, 596, 912
MaeIII	GTNAC	2 cut(s)	456, 781
MalI	GATC	3 cut(s)	315, 627, 723
MboI	GATC	3 cut(s)	313, 625, 721
MboII	GAAGA	3 cut(s)	68, 317, 359
MhlI	GDGCHC	2 cut(s)	286, 403
MluCI	AATT	7 cut(s)	194, 240, 340, 412, 577, 602, 954
MlyI	GAGTC	2 cut(s)	93, 750
MmeI	TCCRAC	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	4 cut(s)	114, 189, 411, 479
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	3 cut(s)	386, 671, 797
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	2 cut(s)	228, 665
Mva1269I	GAATGC	1 cut(s)	928
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	658
NciI	CCSGG	1 cut(s)	665
NdeII	GATC	3 cut(s)	313, 625, 721
NlaIII	CATG	4 cut(s)	158, 310, 362, 470
NlaIV	GGNNCC	2 cut(s)	225, 662
NspI	RCATGY	1 cut(s)	158
PciI	ACATGT	1 cut(s)	154
PctI	GAATGC	1 cut(s)	928
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	678
PkrI	GCNGC	4 cut(s)	204, 385, 670, 673
PleI	GAGTC	2 cut(s)	92, 749
PpsI	GAGTC	2 cut(s)	92, 749
PscI	ACATGT	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	225, 662
PspPI	GGNCC	1 cut(s)	519
PstI	CTGCAG	2 cut(s)	385, 676
PvuII	CAGCTG	3 cut(s)	386, 671, 797
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	286
SaqAI	TTAA	4 cut(s)	114, 189, 411, 479
SatI	GCNGC	4 cut(s)	203, 384, 669, 672
Sau3AI	GATC	3 cut(s)	313, 625, 721
Sau96I	GGNCC	1 cut(s)	519
SchI	GAGTC	2 cut(s)	93, 750
ScrFI	CCNGG	2 cut(s)	228, 665
SduI	GDGCHC	2 cut(s)	286, 403
SfcI	CTRYAG	2 cut(s)	381, 672
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	7 cut(s)	194, 240, 340, 412, 577, 602, 954
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	6 cut(s)	135, 149, 279, 297, 596, 912
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	226, 663
TaaI	ACNGT	2 cut(s)	38, 930
TaqI	TCGA	2 cut(s)	624, 885
TasI	AATT	7 cut(s)	194, 240, 340, 412, 577, 602, 954
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	678
Tru1I	TTAA	4 cut(s)	114, 189, 411, 479
Tru9I	TTAA	4 cut(s)	114, 189, 411, 479
TscAI	CASTG	1 cut(s)	867
TseI	GCWGC	3 cut(s)	383, 668, 671
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	1 cut(s)	867
VneI	GTGCAC	1 cut(s)	399
XapI	RAATTY	2 cut(s)	240, 602
XceI	RCATGY	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	6 cut(s)	135, 149, 279, 297, 596, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.