AT3G09880

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012260
Physical Location & Seq
Forward (+)
3029471 .. 3032399
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09880.1

Sequence Viewer

Length: 1500 bp
ATGTTTAAGAAAATCATGAAAGGTGGGCATCGAAAGCCCTCTAAATCCGAAGCTAATGAACCGTCTAGTTATGGGATTGGTCTACCTGATAATAGGTCAGGTCCTGGCTCCAATGTGGTCGTTAGTCACGCTTCTCGTGGTGCATTGGTTAATTCTTCTCCGTCGCCAGTGACTGCAACTCCACCTCCTCCGCCTTTGGGCTCGGTGGAGCCACTCCCGTTGTTTAGAGATGTGCCGGTTTCAGAGAGGCAAACTTTGTTCTTGAGGAAACTTCAGAATTGCTGTTTCCTTTTCGATTTCACTGACACGATTAAGAATGCTAGAGACAAGGAGATTAAGAGGCAAACGTTGTTGGAGCTGGTGGATTTTATACAGTCTGGATCTAGTAAGATCTCAGAGTCGTGTCAGGAAGAAATGATTAAGATGATTTCTGTTAATATTTTCCGGTCTCTCCCACCAGCATCACACGAGAATACGGGTCAAGAGCCTGCAGATCCTGAGGAAGAAGAACCTTATTTGGAACCTTCTTGGCCTCACTTACAGCTAGTTTACGAGTTGCTCCTGAGATATGTTGTTTCGACTGACACTGATACAAAGGTGGCCAAACGGTATATCGACCATTCTTTTGTGTTAAAGTTGCTCGATTTGTTTGATTCTGAGGACCCAAGAGAGAGGGAGTATTTGAAAACGATTCTTCATAGGATATATGGGAAGTTTATGGTCCACAGACCCTTTATTAGGAAAGCAATCAACAACATATTCTATAGGTTTATTTATGAGACAGAGAGACACAGTGGGATTGGGGAACTCTTGGAGATTCTAGGCAGTATCATAAACGGGTTTGCATTGCCTATGAAGGAGGAACACAAGCTATTCTTAATCAGGGTGTTGATACCATTGCATAAGCCAAAACCAATCGTTGTATATCATCAGCAGTTATCTTATTGCATCGTTCAGTTTGTGGAAAAAGATTATAAGCTTGCGGATACAGTAATCAGGGGATTGTTAAAGTATTGGCCCGTGACAAACTGCTCAAAGGAGAATCTCTTCCTTGGAGAACTTGAAGAAGTTCTTGAGGCAACACAGCCTGTCGAGTTCCAGCGTTGCATGGTTCCATTATTCCAACAAATTGGTCGCTGTCTCACTAGCTCCCACTTTCAGGTTGCAGAACGAGCACTGTTCTTGTGGAACAACGAGCACATTGTGGGTCTAATCGCGCAAAACCGAAGCGTGATCCTTCCAATCATATATCCCACACTGGAGAAGAACATCCAGTCTCACTGGAACCAAGCAGTTCATGGTCTAACCACAAATATCAAGAAAATGTTCATGGAAATGGATCCTGAACTGTTTGAAGAATGTCAGAGACAGTATGAAGAGAAACAAGCGAAATCCAAAGAAGTAGAAGAACAACGGCAATATACATGGAAGAGATTAGCAGAAGCAGCGGCGGAGCGAGATGGAGGAGGAGGAGAAGAAGATCATATGATCACTTCCTAG

Protein Analysis

499

Amino Acids

57.47

Weight (kDa)

6.19

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 72 - 483 3e-192 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09880 AT5G03470
fragaria_vesca FvH4_6g16640 FvH4_6g16640 FvH4_6g16640
malus_domestica MD04G1090100.v1.1 MD12G1108600.v1.1
prunus_persica Prupe.7G127000_v2.0.a1
pyrus_communis pycom04g08520
rosa_chinensis RchiOBHm_Chr3g0470601
rosa_laevigata RLG00000024255
rosa_multiflora Rmu_sc0002115.1_g000016
rosa_roxburghii Rroxscaffold_6G00410700
rosa_rugosa Rorug03G0110400
rosa_samantha Rh3AG160400 Rh3BG184900 Rh3CG175400 Rh3DG189800
rosa_wichuraiana Rw3G015170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 975
AccI GTMKAC 1 cut(s) 82
AccII CGCG 1 cut(s) 1217
AciI CCGC 4 cut(s) 191, 983, 1448, 1451
AclI AACGTT 1 cut(s) 347
AclWI GGATC 5 cut(s) 388, 488, 1228, 1334, 1347
AcoI YGGCCR 1 cut(s) 600
AcuI CTGAAG 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 1204
AfiI CCNNNNNNNGG 3 cut(s) 197, 738, 1159
AgsI TTSAA 3 cut(s) 685, 1064, 1355
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 6 cut(s) 53, 358, 544, 871, 979, 1149
AluI AGCT 6 cut(s) 53, 358, 544, 871, 979, 1149
Alw21I GWGCWC 2 cut(s) 1177, 1200
Alw26I GTCTC 7 cut(s) 318, 453, 773, 781, 1145, 1281, 1360
AlwI GGATC 5 cut(s) 388, 488, 1228, 1334, 1347
AlwNI CAGNNNCTG 3 cut(s) 104, 173, 497
AoxI GGCC 3 cut(s) 530, 600, 1016
ApeKI GCWGC 1 cut(s) 1445
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
Asp700I GAANNNNTTC 3 cut(s) 1046, 1068, 1325
AspLEI GCGC 1 cut(s) 1219
AspS9I GGNCC 4 cut(s) 101, 661, 721, 1017
AvaII GGWCC 3 cut(s) 101, 661, 721
AxyI CCTNAGG 1 cut(s) 498
BaeI ACNNNNGTAYC 2 cut(s) 582, 615
BalI TGGCCA 1 cut(s) 602
BamHI GGATCC 1 cut(s) 1339
BanII GRGCYC 1 cut(s) 203
BauI CACGAG 2 cut(s) 135, 467
Bbv12I GWGCWC 2 cut(s) 1177, 1200
BbvI GCAGC 1 cut(s) 1457
BccI CCATC 1 cut(s) 1454
BceAI ACGGC 1 cut(s) 1430
BciT130I CCWGG 1 cut(s) 105
BciVI GTATCC 1 cut(s) 979
BclI TGATCA 1 cut(s) 1488
BcoDI GTCTC 7 cut(s) 318, 453, 773, 781, 1145, 1281, 1360
BfaI CTAG 7 cut(s) 66, 321, 384, 545, 821, 1146, 1498
BfmI CTRYAG 2 cut(s) 489, 763
BfuI GTATCC 1 cut(s) 979
BglII AGATCT 1 cut(s) 390
BisI GCNGC 2 cut(s) 1446, 1449
BlsI GCNGC 2 cut(s) 1447, 1450
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 3 cut(s) 101, 661, 721
BmgT120I GGNCC 4 cut(s) 101, 661, 721, 1017
BmiI GGNNCC 7 cut(s) 109, 210, 522, 663, 1113, 1286, 1341
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 3 cut(s) 37, 470, 957
BpmI CTGGAG 1 cut(s) 1280
BpuEI CTTGAG 2 cut(s) 283, 1094
BsaI GGTCTC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 1051
BsaWI WCCGGW 1 cut(s) 444
BsaXI ACNNNNNCTCC 4 cut(s) 163, 169, 193, 199
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 738, 1159
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 4 cut(s) 167, 1263, 1273, 1286
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 2 cut(s) 845, 896
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 1051
BseGI GGATG 1 cut(s) 1269
BseLI CCNNNNNNNGG 3 cut(s) 197, 738, 1159
BseMI GCAATG 2 cut(s) 845, 896
BseMII CTCAG 4 cut(s) 408, 489, 554, 648
BseNI ACTGG 4 cut(s) 167, 1263, 1273, 1286
BseRI GAGGAG 4 cut(s) 177, 1479, 1482, 1485
BseXI GCAGC 1 cut(s) 1457
Bsh1236I CGCG 1 cut(s) 1217
BshFI GGCC 3 cut(s) 532, 602, 1018
BsiHKAI GWGCWC 2 cut(s) 1177, 1200
BsiSI CCGG 2 cut(s) 236, 445
BslI CCNNNNNNNGG 3 cut(s) 197, 738, 1159
BsmAI GTCTC 7 cut(s) 318, 453, 773, 781, 1145, 1281, 1360
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 3 cut(s) 532, 602, 1018
Bso31I GGTCTC 1 cut(s) 453
Bsp1286I GDGCHC 3 cut(s) 203, 1177, 1200
Bsp143I GATC 7 cut(s) 380, 390, 493, 1233, 1339, 1480, 1488
BspACI CCGC 4 cut(s) 191, 983, 1448, 1451
BspANI GGCC 3 cut(s) 532, 602, 1018
BspCNI CTCAG 4 cut(s) 407, 490, 555, 649
BspFNI CGCG 1 cut(s) 1217
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 7 cut(s) 109, 210, 522, 663, 1113, 1286, 1341
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 5 cut(s) 388, 488, 1228, 1334, 1347
BspTNI GGTCTC 1 cut(s) 453
BsrDI GCAATG 2 cut(s) 845, 896
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 4 cut(s) 167, 1263, 1273, 1286
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 1051
BssMI GATC 7 cut(s) 380, 390, 493, 1233, 1339, 1480, 1488
BssSI CACGAG 2 cut(s) 135, 467
BssT1I CCWWGG 1 cut(s) 1051
Bst2BI CACGAG 2 cut(s) 135, 467
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 8 cut(s) 63, 375, 609, 794, 991, 1179, 1350, 1371
Bst6I CTCTTC 3 cut(s) 1052, 1371, 1424
BstC8I GCNNGC 2 cut(s) 489, 981
BstDEI CTNAG 4 cut(s) 394, 498, 563, 657
BstENI CCTNNNNNAGG 1 cut(s) 736
BstF5I GGATG 1 cut(s) 1269
BstFNI CGCG 1 cut(s) 1217
BstHHI GCGC 1 cut(s) 1219
BstKTI GATC 7 cut(s) 383, 393, 496, 1236, 1342, 1483, 1491
BstMAI GTCTC 7 cut(s) 318, 453, 773, 781, 1145, 1281, 1360
BstMBI GATC 7 cut(s) 380, 390, 493, 1233, 1339, 1480, 1488
BstMWI GCNNNNNNNGC 3 cut(s) 34, 1172, 1445
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 2 cut(s) 489, 763
BstUI CGCG 1 cut(s) 1217
BstV1I GCAGC 1 cut(s) 1457
BstX2I RGATCY 4 cut(s) 380, 390, 493, 1339
BstXI CCANNNNNNTGG 1 cut(s) 1130
BstYI RGATCY 4 cut(s) 380, 390, 493, 1339
Bsu36I CCTNAGG 1 cut(s) 498
BsuI GTATCC 1 cut(s) 979
BsuRI GGCC 3 cut(s) 532, 602, 1018
BtsCI GGATG 1 cut(s) 1269
BtsIMutI CAGTG 7 cut(s) 174, 300, 585, 799, 1175, 1256, 1279
Cac8I GCNNGC 2 cut(s) 489, 981
CaiI CAGNNNCTG 3 cut(s) 104, 173, 497
CciI TCATGA 1 cut(s) 15
CfoI GCGC 1 cut(s) 1219
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 4 cut(s) 101, 661, 721, 1017
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 5 cut(s) 16, 1108, 1298, 1330, 1425
DdeI CTNAG 4 cut(s) 394, 498, 563, 657
DpnI GATC 7 cut(s) 382, 392, 495, 1235, 1341, 1482, 1490
DpnII GATC 7 cut(s) 380, 390, 493, 1233, 1339, 1480, 1488
DraIII CACNNNGTG 1 cut(s) 1204
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 3 cut(s) 1052, 1371, 1424
EarI CTCTTC 3 cut(s) 1052, 1371, 1424
EciI GGCGGA 2 cut(s) 180, 1466
Eco130I CCWWGG 1 cut(s) 1051
Eco24I GRGCYC 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 453
Eco47I GGWCC 3 cut(s) 101, 661, 721
Eco57I CTGAAG 1 cut(s) 257
Eco81I CCTNAGG 1 cut(s) 498
EcoNI CCTNNNNNAGG 1 cut(s) 736
EcoO109I RGGNCCY 2 cut(s) 101, 661
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 1051
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 1051
FaeI CATG 5 cut(s) 19, 1111, 1301, 1333, 1428
FalI AAGNNNNNCTT 4 cut(s) 860, 892, 1056, 1088
FatI CATG 5 cut(s) 15, 1107, 1297, 1329, 1424
FauNDI CATATG 1 cut(s) 1485
FbaI TGATCA 1 cut(s) 1488
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 1446, 1449
FokI GGATG 1 cut(s) 1256
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 1446, 1449
FspBI CTAG 7 cut(s) 66, 321, 384, 545, 821, 1146, 1498
GlaI GCGC 1 cut(s) 1218
GluI GCNGC 2 cut(s) 1446, 1449
GsuI CTGGAG 1 cut(s) 1280
HaeIII GGCC 3 cut(s) 532, 602, 1018
HapII CCGG 2 cut(s) 236, 445
HhaI GCGC 1 cut(s) 1219
Hin1II CATG 5 cut(s) 19, 1111, 1301, 1333, 1428
Hin6I GCGC 1 cut(s) 1217
HinP1I GCGC 1 cut(s) 1217
HindIII AAGCTT 1 cut(s) 977
HinfI GANTC 5 cut(s) 398, 653, 691, 817, 1042
HpaII CCGG 2 cut(s) 236, 445
Hpy166II GTNNAC 3 cut(s) 83, 550, 724
Hpy188I TCNGA 6 cut(s) 49, 244, 276, 397, 658, 1365
Hpy8I GTNNAC 3 cut(s) 83, 550, 724
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 534, 850, 1247
HpyCH4III ACNGT 8 cut(s) 63, 375, 609, 794, 991, 1179, 1350, 1371
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 8 cut(s) 143, 176, 491, 845, 901, 948, 1107, 1166
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 1172, 1445
HpyF3I CTNAG 4 cut(s) 394, 498, 563, 657
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 5 cut(s) 19, 1111, 1301, 1333, 1428
HspAI GCGC 1 cut(s) 1217
Ksp22I TGATCA 1 cut(s) 1488
Kzo9I GATC 7 cut(s) 380, 390, 493, 1233, 1339, 1480, 1488
LmnI GCTCC 6 cut(s) 113, 208, 355, 564, 1154, 1453
Lsp1109I GCAGC 1 cut(s) 1457
LweI GCATC 3 cut(s) 37, 470, 957
MaeI CTAG 7 cut(s) 66, 321, 384, 545, 821, 1146, 1498
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 3 cut(s) 125, 169, 1021
MalI GATC 7 cut(s) 382, 392, 495, 1235, 1341, 1482, 1490
MboI GATC 7 cut(s) 380, 390, 493, 1233, 1339, 1480, 1488
MflI RGATCY 4 cut(s) 380, 390, 493, 1339
MhlI GDGCHC 3 cut(s) 203, 1177, 1200
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 3 cut(s) 151, 277, 1128
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 2 cut(s) 333, 1147
Mox20I TGGCCA 1 cut(s) 602
MroXI GAANNNNTTC 3 cut(s) 1046, 1068, 1325
MscI TGGCCA 1 cut(s) 602
MseI TTAA 9 cut(s) 6, 150, 312, 336, 420, 435, 632, 878, 1007
MslI CAYNNNNRTG 1 cut(s) 1334
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 1448
MspI CCGG 2 cut(s) 236, 445
MspR9I CCNGG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 1217
MwoI GCNNNNNNNGC 3 cut(s) 34, 1172, 1445
NdeI CATATG 1 cut(s) 1485
NdeII GATC 7 cut(s) 380, 390, 493, 1233, 1339, 1480, 1488
NlaIII CATG 5 cut(s) 19, 1111, 1301, 1333, 1428
NlaIV GGNNCC 7 cut(s) 109, 210, 522, 663, 1113, 1286, 1341
NmuCI GTSAC 3 cut(s) 125, 169, 1021
PagI TCATGA 1 cut(s) 15
PctI GAATGC 1 cut(s) 322
PdmI GAANNNNTTC 3 cut(s) 1046, 1068, 1325
PfeI GAWTC 4 cut(s) 653, 691, 817, 1042
PkrI GCNGC 2 cut(s) 1447, 1450
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PpuMI RGGWCCY 2 cut(s) 101, 661
PsiI TTATAA 1 cut(s) 975
Psp1406I AACGTT 1 cut(s) 347
Psp5II RGGWCCY 2 cut(s) 101, 661
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 7 cut(s) 109, 210, 522, 663, 1113, 1286, 1341
PspPI GGNCC 4 cut(s) 101, 661, 721, 1017
PspPPI RGGWCCY 2 cut(s) 101, 661
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 3 cut(s) 104, 173, 497
PsuI RGATCY 4 cut(s) 380, 390, 493, 1339
RseI CAYNNNNRTG 1 cut(s) 1334
SaqAI TTAA 9 cut(s) 6, 150, 312, 336, 420, 435, 632, 878, 1007
SatI GCNGC 2 cut(s) 1446, 1449
Sau3AI GATC 7 cut(s) 380, 390, 493, 1233, 1339, 1480, 1488
Sau96I GGNCC 4 cut(s) 101, 661, 721, 1017
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 3 cut(s) 203, 1177, 1200
SfaNI GCATC 3 cut(s) 37, 470, 957
SfcI CTRYAG 2 cut(s) 489, 763
SinI GGWCC 3 cut(s) 101, 661, 721
SmiMI CAYNNNNRTG 1 cut(s) 1334
SmlI CTYRAG 2 cut(s) 262, 1073
SmoI CTYRAG 2 cut(s) 262, 1073
Sse9I AATT 3 cut(s) 151, 277, 1128
SsiI CCGC 4 cut(s) 191, 983, 1448, 1451
SspI AATATT 1 cut(s) 439
SspMI CTAG 7 cut(s) 66, 321, 384, 545, 821, 1146, 1498
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 1051
TaaI ACNGT 8 cut(s) 63, 375, 609, 794, 991, 1179, 1350, 1371
TaiI ACGT 1 cut(s) 350
TaqI TCGA 6 cut(s) 31, 294, 578, 615, 642, 1092
TasI AATT 3 cut(s) 151, 277, 1128
TauI GCSGC 1 cut(s) 1451
TfiI GAWTC 4 cut(s) 653, 691, 817, 1042
Tru1I TTAA 9 cut(s) 6, 150, 312, 336, 420, 435, 632, 878, 1007
Tru9I TTAA 9 cut(s) 6, 150, 312, 336, 420, 435, 632, 878, 1007
TscAI CASTG 7 cut(s) 174, 307, 592, 799, 1182, 1263, 1286
TseFI GTSAC 3 cut(s) 125, 169, 1021
TseI GCWGC 1 cut(s) 1445
Tsp45I GTSAC 3 cut(s) 125, 169, 1021
TspDTI ATGAA 7 cut(s) 32, 72, 686, 869, 1286, 1318, 1389
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 7 cut(s) 174, 307, 592, 799, 1182, 1263, 1286
VpaK11BI GGWCC 3 cut(s) 101, 661, 721
XagI CCTNNNNNAGG 1 cut(s) 736
XcmI CCANNNNNNNNNTGG 1 cut(s) 1295
XmiI GTMKAC 1 cut(s) 82
XmnI GAANNNNTTC 3 cut(s) 1046, 1068, 1325
XspI CTAG 7 cut(s) 66, 321, 384, 545, 821, 1146, 1498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.