AT3G10080

Germin-like protein subfamily 3 member 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014365
Physical Location & Seq
Reverse (-)
3107266 .. 3108385
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10080.2

Sequence Viewer

Length: 684 bp
ATGGAAGCAAACACTTTGTTTCTTCTAAAAGCTCTTTGTCTTCTTTGTTTTAATGTATGCTTCACATTAGCTTCCGACCCTGATCCCATCCAAGACTTCTGCATACCAAAACCTGTGACATCTCCTTACCATGACCATCACTTCTCCACCAATCTCCCTTGCAAAAACTCCTCCGAAGTAACCACCGAAGATTTTGTCTTTTCCGGTCTAAAAACTGCCGGAAACTTCACGGAGACGGGGTTCGCCACCGTCCCAGTAGGCCCAGAAAACTTCCCCGGCCTTAATACATTAGGCATCTCGTTTGTCCGGGCTGATCTCAAACCCGGATCCATTAACCCACCACATTACCATCCGCGGGCGACGGAAGTAGCCCACTTGGTTAAAGGACGGGTTTACTCTGGTTTTGTGGACTCGAACAATAAGGTTTACGCTAAAGTGATGGAAGAAGGAGAAATGATGGTTTACCCAAAAGGGCTTGTACATTTTCAGATGAACGTCGGAGATGTTACGGCCACGATTGTCGGCGGACTTAATAGCCAAAACCCTGGTATTCAGAAGATACCGTCCGTGGTTTTTGGGTCAGGGATCAATGAGGAGTTGCTTATGAAAGCTTTTGGGTTGAGTCTTAAGCAGATTGGTACGTTGAAGAAAAGATTTGATCCTGTCATGTCTAATGAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

227

Amino Acids

24.78

Weight (kDa)

6.23

Isoelectric Point (pI)

23.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 141 - 282 2e-42 Cupin
Cupin_2 PF07883 175 - 244 1.7e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10080 AT3G10080
fragaria_vesca FvH4_6g18500
malus_domestica MD12G1024100.v1.1 MD12G1034800.v1.1 MD14G1021500.v1.1
prunus_persica Prupe.7G112300_v2.0.a1
pyrus_communis pycom12g02270
rosa_chinensis RchiOBHm_Chr3g0473041
rosa_laevigata RLG00000024035
rosa_multiflora Rmu_sc0006336.1_g000008
rosa_roxburghii Rroxscaffold_6G00408370
rosa_rugosa Rorug03G0130900
rosa_samantha Rh3BG209000 Rh3CG206100 Rh3DG206100
rosa_wichuraiana Rw3G016060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 355
AciI CCGC 3 cut(s) 353, 355, 525
AclWI GGATC 5 cut(s) 77, 321, 334, 593, 653
AcoI YGGCCR 1 cut(s) 510
AfaI GTAC 2 cut(s) 480, 640
AfiI CCNNNNNNNGG 1 cut(s) 355
AflII CTTAAG 1 cut(s) 626
AgsI TTSAA 1 cut(s) 646
AjnI CCWGG 1 cut(s) 544
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 3 cut(s) 32, 71, 611
AluI AGCT 3 cut(s) 32, 71, 611
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 5 cut(s) 77, 321, 334, 593, 653
AoxI GGCC 3 cut(s) 259, 277, 510
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 3 cut(s) 276, 308, 324
BamHI GGATCC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 32
BccI CCATC 5 cut(s) 95, 144, 357, 433, 451
BceAI ACGGC 1 cut(s) 525
BciT130I CCWGG 1 cut(s) 546
BcnI CCSGG 3 cut(s) 276, 308, 324
BcoDI GTCTC 1 cut(s) 227
BfrI CTTAAG 1 cut(s) 626
Bme1390I CCNGG 4 cut(s) 276, 308, 324, 546
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 4 cut(s) 276, 308, 324, 546
BmrI ACTGGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 32
BpuMI CCSGG 3 cut(s) 276, 308, 324
BsaJI CCNNGG 4 cut(s) 274, 353, 544, 567
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 4 cut(s) 274, 353, 544, 567
BseGI GGATG 2 cut(s) 87, 349
BseLI CCNNNNNNNGG 1 cut(s) 355
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 2 cut(s) 160, 608
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 3 cut(s) 261, 279, 512
BsiSI CCGG 5 cut(s) 204, 219, 276, 307, 324
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 227
BsmBI CGTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 3 cut(s) 261, 279, 512
Bsp1407I TGTACA 1 cut(s) 478
Bsp143I GATC 5 cut(s) 82, 313, 326, 585, 658
BspACI CCGC 3 cut(s) 353, 355, 525
BspANI GGCC 3 cut(s) 261, 279, 512
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 328
BspPI GGATC 5 cut(s) 77, 321, 334, 593, 653
BspTI CTTAAG 1 cut(s) 626
BsrGI TGTACA 1 cut(s) 478
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 4 cut(s) 274, 353, 544, 567
BssMI GATC 5 cut(s) 82, 313, 326, 585, 658
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 2 cut(s) 250, 564
BstAFI CTTAAG 1 cut(s) 626
BstAUI TGTACA 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 357
BstDSI CCRYGG 2 cut(s) 353, 567
BstF5I GGATG 2 cut(s) 87, 349
BstFNI CGCG 1 cut(s) 355
BstKTI GATC 5 cut(s) 85, 316, 329, 588, 661
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 5 cut(s) 82, 313, 326, 585, 658
BstNI CCWGG 1 cut(s) 546
BstSCI CCNGG 4 cut(s) 274, 306, 322, 544
BstUI CGCG 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 326
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 3 cut(s) 261, 279, 512
BtgI CCRYGG 2 cut(s) 353, 567
BtsCI GGATG 2 cut(s) 87, 349
Cac8I GCNNGC 1 cut(s) 357
Cfr13I GGNCC 1 cut(s) 260
Cfr42I CCGCGG 1 cut(s) 356
Csp6I GTAC 2 cut(s) 479, 639
CviAII CATG 2 cut(s) 131, 667
CviQI GTAC 2 cut(s) 479, 639
DpnI GATC 5 cut(s) 84, 315, 328, 587, 660
DpnII GATC 5 cut(s) 82, 313, 326, 585, 658
EaeI YGGCCR 1 cut(s) 510
EciI GGCGGA 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 2 cut(s) 134, 670
FaiI YATR 5 cut(s) 58, 104, 132, 605, 668
FaqI GGGAC 1 cut(s) 236
FatI CATG 2 cut(s) 130, 666
FauI CCCGC 1 cut(s) 348
FokI GGATG 2 cut(s) 74, 336
HaeIII GGCC 3 cut(s) 261, 279, 512
HapII CCGG 5 cut(s) 204, 219, 276, 307, 324
Hin1II CATG 2 cut(s) 134, 670
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 2 cut(s) 410, 622
HpaII CCGG 5 cut(s) 204, 219, 276, 307, 324
Hpy166II GTNNAC 4 cut(s) 394, 409, 427, 463
Hpy188I TCNGA 5 cut(s) 76, 175, 489, 500, 555
Hpy8I GTNNAC 4 cut(s) 394, 409, 427, 463
Hpy99I CGWCG 2 cut(s) 364, 500
HpyAV CCTTC 1 cut(s) 440
HpyCH4III ACNGT 2 cut(s) 250, 564
HpyCH4IV ACGT 2 cut(s) 495, 641
HpyCH4V TGCA 2 cut(s) 102, 162
HpySE526I ACGT 2 cut(s) 495, 641
Hsp92II CATG 2 cut(s) 134, 670
KspI CCGCGG 1 cut(s) 356
Kzo9I GATC 5 cut(s) 82, 313, 326, 585, 658
LweI GCATC 1 cut(s) 303
MaeII ACGT 2 cut(s) 495, 641
MaeIII GTNAC 3 cut(s) 115, 178, 505
MalI GATC 5 cut(s) 84, 315, 328, 587, 660
MboI GATC 5 cut(s) 82, 313, 326, 585, 658
MboII GAAGA 6 cut(s) 14, 32, 200, 455, 568, 658
MflI RGATCY 1 cut(s) 326
MlyI GAGTC 2 cut(s) 404, 631
MmeI TCCRAC 2 cut(s) 99, 478
MnlI CCTC 2 cut(s) 181, 586
MseI TTAA 6 cut(s) 51, 282, 333, 381, 531, 627
MspA1I CMGCKG 1 cut(s) 355
MspCI CTTAAG 1 cut(s) 626
MspI CCGG 5 cut(s) 204, 219, 276, 307, 324
MspR9I CCNGG 4 cut(s) 276, 308, 324, 546
MvaI CCWGG 1 cut(s) 546
MvnI CGCG 1 cut(s) 355
NciI CCSGG 3 cut(s) 276, 308, 324
NdeII GATC 5 cut(s) 82, 313, 326, 585, 658
NlaIII CATG 2 cut(s) 134, 670
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 115
PleI GAGTC 2 cut(s) 404, 630
PpsI GAGTC 2 cut(s) 404, 630
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 2 cut(s) 480, 640
RsaNI GTAC 2 cut(s) 479, 639
SacII CCGCGG 1 cut(s) 356
SaqAI TTAA 6 cut(s) 51, 282, 333, 381, 531, 627
Sau3AI GATC 5 cut(s) 82, 313, 326, 585, 658
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 2 cut(s) 404, 631
ScrFI CCNGG 4 cut(s) 276, 308, 324, 546
SetI ASST 7 cut(s) 34, 73, 115, 426, 498, 613, 644
SfaNI GCATC 1 cut(s) 303
Sfr303I CCGCGG 1 cut(s) 356
SgrBI CCGCGG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
SsiI CCGC 3 cut(s) 353, 355, 525
StyD4I CCNGG 4 cut(s) 274, 306, 322, 544
TaaI ACNGT 2 cut(s) 250, 564
TaiI ACGT 2 cut(s) 498, 644
TaqI TCGA 1 cut(s) 413
TatI WGTACW 1 cut(s) 478
Tru1I TTAA 6 cut(s) 51, 282, 333, 381, 531, 627
Tru9I TTAA 6 cut(s) 51, 282, 333, 381, 531, 627
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 506, 620
TspGWI ACGGA 3 cut(s) 245, 377, 556
Vha464I CTTAAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.