AT3G11410

phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009891
Physical Location & Seq
Reverse (-)
3583782 .. 3585850
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11410.1

Sequence Viewer

Length: 1200 bp
ATGGCTGGGATTTGTTGCGGTGTTGTTGGAGAGACTGAACCGGCGGCACCGGTTGATTCAACTTCTCGAGCTTCTCTTAGACGGAGGTTAGATCTACTTCCGTCGATCAAAATTGTTGCTGACTCCGCCGTTGCTCCTCCGCTTGAAAACTGCCGTAAACGGCAGAAGCGTGAGACAGTAGTGCTCTCGACGTTACCGGGAAATCTAGATCTGGATTCGAATGTGAGGAGTGAGAATAAGAAGGCTAGATCAGCGGTTACGAATTCAAATTCTGTTACGGAAGCAGAGAGTTTCTTTTCCGATGTACCTAAGATCGGTACGACGTCGGTTTGTGGTAGAAGACGAGACATGGAAGACGCTGTCTCGATTCATCCTTCGTTTCTTCAACGGAACTCTGAGAATCATCATTTCTACGGTGTCTTTGACGGCCATGGCTGCTCTCATGTTGCGGAGAAGTGCAGAGAACGGTTGCATGATATAGTGAAGAAGGAAGTTGAAGTTATGGCTTCCGACGAGTGGACAGAGACGATGGTTAAGAGTTTTCAAAAAATGGATAAAGAAGTTAGCCAACGAGAGTGTAACTTAGTTGTTAATGGTGCTACTCGGAGTATGAAAAATTCTTGTAGATGTGAATTGCAGTCTCCTCAGTGTGACGCCGTCGGATCCACCGCTGTTGTATCGGTTGTCACGCCGGAGAAGATCATTGTTTCTAATTGCGGTGATTCACGGGCTGTGCTTTGTCGTAACGGTGTAGCCATTCCTCTCTCCGTAGATCACAAGCCGGATCGACCCGATGAATTGATTCGGATCCAACAAGCTGGTGGGCGAGTTATATATTGGGATGGAGCTAGGGTTCTTGGAGTTCTTGCCATGTCTAGAGCAATTGGTGATAATTACTTGAAACCGTATGTGATTCCGGATCCGGAGGTAACAGTGACGGATCGAACTGATGAGGATGAGTGTTTGATCTTGGCGAGTGATGGACTATGGGATGTTGTACCAAACGAGACGGCGTGTGGCGTGGCTCGCATGTGCCTTCGAGGTGCTGGTGCGGGTGACGACTCAGATGCGGCGCACAATGCGTGCTCCGATGCGGCGTTGCTCTTAACAAAGTTGGCTCTAGCAAGACAGAGCTCCGATAACGTGAGCGTCGTTGTGGTTGACTTGAGGAAGAGGAGGAATAATCAAGCGTCGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010359 GO:0010360 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1903792 GO:1903959 GO:1903960 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

399

Amino Acids

43.35

Weight (kDa)

5.97

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 106 - 381 3e-66 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 46
AccIII TCCGGA 2 cut(s) 916, 922
AclWI GGATC 8 cut(s) 657, 670, 792, 802, 815, 914, 927, 948
AcoI YGGCCR 1 cut(s) 427
AcsI RAATTY 3 cut(s) 262, 268, 616
AcyI GRCGYC 2 cut(s) 323, 654
AfaI GTAC 3 cut(s) 306, 319, 999
AfiI CCNNNNNNNGG 2 cut(s) 314, 516
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 7 cut(s) 60, 146, 267, 386, 497, 545, 901
AloI GAACNNNNNNTCC 2 cut(s) 837, 869
AluBI AGCT 4 cut(s) 71, 818, 848, 1134
AluI AGCT 4 cut(s) 71, 818, 848, 1134
Alw21I GWGCWC 3 cut(s) 186, 1088, 1136
Alw26I GTCTC 7 cut(s) 26, 167, 339, 367, 518, 645, 1001
AlwI GGATC 8 cut(s) 657, 670, 792, 802, 815, 914, 927, 948
Ama87I CYCGRG 1 cut(s) 66
Aor13HI TCCGGA 2 cut(s) 916, 922
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 1 cut(s) 435
ApoI RAATTY 3 cut(s) 262, 268, 616
AsiGI ACCGGT 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 801
AspLEI GCGC 1 cut(s) 1075
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 3 cut(s) 731, 899, 1067
AsuII TTCGAA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 66
BamHI GGATCC 3 cut(s) 662, 807, 919
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 1136
BbsI GAAGAC 2 cut(s) 346, 360
Bbv12I GWGCWC 3 cut(s) 186, 1088, 1136
BbvI GCAGC 1 cut(s) 422
BccI CCATC 3 cut(s) 523, 836, 974
BceAI ACGGC 6 cut(s) 113, 138, 176, 442, 641, 1026
BcgI CGANNNNNNTGC 2 cut(s) 1049, 1083
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 7 cut(s) 26, 167, 339, 367, 518, 645, 1001
BfaI CTAG 5 cut(s) 206, 246, 849, 876, 1121
BglII AGATCT 2 cut(s) 91, 208
BisI GCNGC 4 cut(s) 45, 436, 1071, 1095
BlsI GCNGC 4 cut(s) 46, 437, 1072, 1096
Bme1390I CCNGG 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 66
BmiI GGNNCC 4 cut(s) 48, 664, 809, 921
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 1057, 1081
BpiI GAAGAC 2 cut(s) 346, 360
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 1186
BpuMI CCSGG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 806
BsaHI GRCGYC 2 cut(s) 323, 654
BsaJI CCNNGG 1 cut(s) 430
BsaWI WCCGGW 3 cut(s) 49, 916, 922
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 516
Bse118I RCCGGY 2 cut(s) 40, 49
Bse8I GATNNNNATC 1 cut(s) 806
BseAI TCCGGA 2 cut(s) 916, 922
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 4 cut(s) 370, 847, 961, 997
BseJI GATNNNNATC 1 cut(s) 806
BseLI CCNNNNNNNGG 2 cut(s) 314, 516
BseMII CTCAG 3 cut(s) 387, 659, 1077
BseRI GAGGAG 4 cut(s) 126, 241, 633, 1189
BseXI GCAGC 1 cut(s) 422
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 478
BshFI GGCC 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 49
BsiHKAI GWGCWC 3 cut(s) 186, 1088, 1136
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 7 cut(s) 41, 50, 197, 692, 782, 917, 923
BslI CCNNNNNNNGG 2 cut(s) 314, 516
BsmAI GTCTC 7 cut(s) 26, 167, 339, 367, 518, 645, 1001
BsmBI CGTCTC 2 cut(s) 518, 1001
BsnI GGCC 1 cut(s) 429
BsoBI CYCGRG 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 3 cut(s) 186, 1088, 1136
Bsp13I TCCGGA 2 cut(s) 916, 922
Bsp19I CCATGG 1 cut(s) 430
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 3 cut(s) 388, 658, 1076
BspEI TCCGGA 2 cut(s) 916, 922
BspLI GGNNCC 4 cut(s) 48, 664, 809, 921
BspPI GGATC 8 cut(s) 657, 670, 792, 802, 815, 914, 927, 948
BspT104I TTCGAA 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 46
BsrFI RCCGGY 2 cut(s) 40, 49
BssAI RCCGGY 2 cut(s) 40, 49
BssECI CCNNGG 1 cut(s) 430
BssNI GRCGYC 2 cut(s) 323, 654
BssT1I CCWWGG 1 cut(s) 430
Bst4CI ACNGT 6 cut(s) 178, 416, 468, 749, 906, 934
Bst6I CTCTTC 1 cut(s) 1166
BstACI GRCGYC 2 cut(s) 323, 654
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 1027, 1084
BstDEI CTNAG 6 cut(s) 77, 309, 396, 583, 645, 1063
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 4 cut(s) 370, 847, 961, 997
BstHHI GCGC 1 cut(s) 1075
BstMAI GTCTC 7 cut(s) 26, 167, 339, 367, 518, 645, 1001
BstMWI GCNNNNNNNGC 5 cut(s) 125, 251, 435, 1026, 1079
BstNSI RCATGY 1 cut(s) 1033
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 422
BstV2I GAAGAC 2 cut(s) 346, 360
BstX2I RGATCY 5 cut(s) 91, 208, 662, 807, 919
BstXI CCANNNNNNTGG 1 cut(s) 818
BstYI RGATCY 5 cut(s) 91, 208, 662, 807, 919
BsuRI GGCC 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 4 cut(s) 370, 847, 961, 997
BtsIMutI CAGTG 2 cut(s) 653, 939
Cac8I GCNNGC 2 cut(s) 1027, 1084
CfoI GCGC 1 cut(s) 1075
Cfr10I RCCGGY 2 cut(s) 40, 49
CseI GACGC 4 cut(s) 365, 662, 1138, 1179
Csp6I GTAC 3 cut(s) 305, 318, 998
CspAI ACCGGT 1 cut(s) 49
CspCI CAANNNNNGTGG 2 cut(s) 655, 690
CviAII CATG 6 cut(s) 349, 431, 443, 473, 871, 1030
CviQI GTAC 3 cut(s) 305, 318, 998
DdeI CTNAG 6 cut(s) 77, 309, 396, 583, 645, 1063
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 1 cut(s) 1166
EarI CTCTTC 1 cut(s) 1166
EciI GGCGGA 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 1134
Eco130I CCWWGG 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 1136
Eco53kI GAGCTC 1 cut(s) 1134
Eco88I CYCGRG 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 1134
EcoRI GAATTC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 1136
ErhI CCWWGG 1 cut(s) 430
Esp3I CGTCTC 2 cut(s) 518, 1001
FaeI CATG 6 cut(s) 352, 434, 446, 476, 874, 1033
FatI CATG 6 cut(s) 348, 430, 442, 472, 870, 1029
FauI CCCGC 1 cut(s) 1045
Fnu4HI GCNGC 4 cut(s) 45, 436, 1071, 1095
FokI GGATG 4 cut(s) 357, 854, 968, 1004
FriOI GRGCYC 1 cut(s) 1136
Fsp4HI GCNGC 4 cut(s) 45, 436, 1071, 1095
FspBI CTAG 5 cut(s) 206, 246, 849, 876, 1121
GlaI GCGC 1 cut(s) 1074
GluI GCNGC 4 cut(s) 45, 436, 1071, 1095
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 429
HapII CCGG 7 cut(s) 41, 50, 197, 692, 782, 917, 923
HgaI GACGC 4 cut(s) 365, 662, 1138, 1179
HhaI GCGC 1 cut(s) 1075
Hin1I GRCGYC 2 cut(s) 323, 654
Hin1II CATG 6 cut(s) 352, 434, 446, 476, 874, 1033
Hin6I GCGC 1 cut(s) 1073
HinP1I GCGC 1 cut(s) 1073
HincII GTYRAC 1 cut(s) 1162
HindII GTYRAC 1 cut(s) 1162
HinfI GANTC 9 cut(s) 56, 122, 215, 367, 400, 722, 802, 913, 1061
HpaII CCGG 7 cut(s) 41, 50, 197, 692, 782, 917, 923
HphI GGTGA 3 cut(s) 731, 899, 1067
Hpy166II GTNNAC 3 cut(s) 158, 519, 1162
Hpy188I TCNGA 9 cut(s) 301, 397, 511, 606, 662, 807, 1066, 1090, 1138
Hpy188III TCNNGA 8 cut(s) 66, 187, 206, 212, 364, 876, 917, 923
Hpy8I GTNNAC 3 cut(s) 158, 519, 1162
Hpy99I CGWCG 8 cut(s) 106, 193, 325, 328, 515, 662, 1154, 1195
HpyAV CCTTC 4 cut(s) 235, 384, 481, 1046
HpyCH4III ACNGT 6 cut(s) 178, 416, 468, 749, 906, 934
HpyCH4IV ACGT 3 cut(s) 191, 323, 1143
HpyCH4V TGCA 3 cut(s) 459, 472, 637
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 251, 435, 1026, 1079
HpyF3I CTNAG 6 cut(s) 77, 309, 396, 583, 645, 1063
HpySE526I ACGT 3 cut(s) 191, 323, 1143
Hsp92I GRCGYC 2 cut(s) 323, 654
Hsp92II CATG 6 cut(s) 352, 434, 446, 476, 874, 1033
HspAI GCGC 1 cut(s) 1073
Kpn2I TCCGGA 2 cut(s) 916, 922
LmnI GCTCC 4 cut(s) 139, 845, 1091, 1139
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 2 cut(s) 1057, 1081
MaeI CTAG 5 cut(s) 206, 246, 849, 876, 1121
MaeII ACGT 3 cut(s) 191, 323, 1143
MboII GAAGA 6 cut(s) 351, 365, 374, 496, 709, 1183
MfeI CAATTG 1 cut(s) 882
MflI RGATCY 5 cut(s) 91, 208, 662, 807, 919
MhlI GDGCHC 3 cut(s) 186, 1088, 1136
MluCI AATT 9 cut(s) 111, 262, 268, 616, 632, 712, 797, 882, 892
MlyI GAGTC 2 cut(s) 116, 1055
MmeI TCCRAC 4 cut(s) 7, 534, 640, 835
MroI TCCGGA 2 cut(s) 916, 922
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 4 cut(s) 534, 591, 1106, 1198
MspA1I CMGCKG 2 cut(s) 254, 671
MspI CCGG 7 cut(s) 41, 50, 197, 692, 782, 917, 923
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 882
MwoI GCNNNNNNNGC 5 cut(s) 125, 251, 435, 1026, 1079
NciI CCSGG 1 cut(s) 198
NcoI CCATGG 1 cut(s) 430
NlaIII CATG 6 cut(s) 352, 434, 446, 476, 874, 1033
NlaIV GGNNCC 4 cut(s) 48, 664, 809, 921
NmuCI GTSAC 4 cut(s) 650, 685, 934, 1055
NspI RCATGY 1 cut(s) 1033
NspV TTCGAA 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 66
PcsI WCGNNNNNNNCGW 2 cut(s) 166, 1149
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 7 cut(s) 56, 215, 367, 400, 722, 802, 913
PflFI GACNNNGTC 2 cut(s) 359, 656
PinAI ACCGGT 1 cut(s) 49
PkrI GCNGC 4 cut(s) 46, 437, 1072, 1096
PleI GAGTC 2 cut(s) 116, 1055
PpsI GAGTC 2 cut(s) 116, 1055
Psp124BI GAGCTC 1 cut(s) 1136
PspFI CCCAGC 1 cut(s) 5
PspN4I GGNNCC 4 cut(s) 48, 664, 809, 921
PsuI RGATCY 5 cut(s) 91, 208, 662, 807, 919
PsyI GACNNNGTC 2 cut(s) 359, 656
RsaI GTAC 3 cut(s) 306, 319, 999
RsaNI GTAC 3 cut(s) 305, 318, 998
SacI GAGCTC 1 cut(s) 1136
SaqAI TTAA 4 cut(s) 534, 591, 1106, 1198
SatI GCNGC 4 cut(s) 45, 436, 1071, 1095
SchI GAGTC 2 cut(s) 116, 1055
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 3 cut(s) 186, 1088, 1136
SfaNI GCATC 2 cut(s) 1057, 1081
Sfr274I CTCGAG 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 66, 1165
SmoI CTYRAG 2 cut(s) 66, 1165
Sse9I AATT 9 cut(s) 111, 262, 268, 616, 632, 712, 797, 882, 892
SspMI CTAG 5 cut(s) 206, 246, 849, 876, 1121
SstI GAGCTC 1 cut(s) 1136
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 6 cut(s) 178, 416, 468, 749, 906, 934
TaiI ACGT 3 cut(s) 194, 326, 1146
TaqI TCGA 8 cut(s) 67, 104, 188, 218, 365, 787, 943, 1039
TasI AATT 9 cut(s) 111, 262, 268, 616, 632, 712, 797, 882, 892
TauI GCSGC 3 cut(s) 47, 1073, 1097
TfiI GAWTC 7 cut(s) 56, 215, 367, 400, 722, 802, 913
Tru1I TTAA 4 cut(s) 534, 591, 1106, 1198
Tru9I TTAA 4 cut(s) 534, 591, 1106, 1198
TscAI CASTG 2 cut(s) 653, 939
TseFI GTSAC 4 cut(s) 650, 685, 934, 1055
TseI GCWGC 1 cut(s) 435
Tsp45I GTSAC 4 cut(s) 650, 685, 934, 1055
TspDTI ATGAA 3 cut(s) 359, 626, 810
TspGWI ACGGA 6 cut(s) 90, 97, 293, 403, 757, 953
TspRI CASTG 2 cut(s) 653, 939
Tth111I GACNNNGTC 2 cut(s) 359, 656
XapI RAATTY 3 cut(s) 262, 268, 616
XbaI TCTAGA 2 cut(s) 205, 875
XceI RCATGY 1 cut(s) 1033
XcmI CCANNNNNNNNNTGG 1 cut(s) 818
XhoI CTCGAG 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 5 cut(s) 206, 246, 849, 876, 1121
ZraI GACGTC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.