Rorug01G0340000

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009891
Physical Location & Seq
Forward (+)
45801611 .. 45802228
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0340000.1

Sequence Viewer

Length: 618 bp
ATGGAGAAGGGAAGGTTAATCCATCTGAATGATCACTGGGTCTCCGTTGCTATAGACAATCTTGATTCTTTTGGGGATGTTGGGTACCTAGACTTCAGGTTTCTCGATCAACTCTTACCACACTGCTCCAAAGACCAGTTAATTCACATCGAGAAGTGCACAAAAGGTACAGACCTGACTCCGATCACCGATAAGCTTTGGAAGAAGTTCTTCGAGAGAGACTTCGGTGGCAAAGCCACTGATGAGGTGATCGAGAAGATGAAGATCAAGAAAGTGATGAGCTTCAAGTGGTCAGACTTGTACCAGGAAAAGTCCAAGAGAGTGGAAAAGGCTGAGAAAGAAGTCGGTGAAAGGTTGAAGAAGCTGTATGAGAAAGAAGATGCTCGGAAACAAAGCCGGCAAGTTAGGGTGTTAGACAAGGTTCCACCTTCTTCGTCATGCAACAAAAGAACCAGCTCCAACAAAGATAGCAAACTGATGAGCAAATTGAGGAAGCAGCATCTGAATTGTCTGGAAATGAGAAATATTCAAGCTATGAAGATGAAGAAAACTGCTGGCAACTGGTCTGGTCTCATCAGAAAGCCAAGGACGAGTATTCAAGCTATGAACGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010359 GO:0010360 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1903792 GO:1903959 GO:1903960 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

205

Amino Acids

23.99

Weight (kDa)

9.71

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 25 - 134 2.5e-23 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 79
AfaI GTAC 3 cut(s) 86, 169, 302
AgsI TTSAA 4 cut(s) 286, 358, 530, 599
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 6 cut(s) 196, 282, 364, 456, 533, 602
AluI AGCT 6 cut(s) 196, 282, 364, 456, 533, 602
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 3 cut(s) 46, 213, 575
Alw44I GTGCAC 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 502
ApaLI GTGCAC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 496
Asp700I GAANNNNTTC 2 cut(s) 206, 209
Asp718I GGTACC 1 cut(s) 84
AsuHPI GGTGA 3 cut(s) 178, 259, 359
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 77, 109
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 508
BccI CCATC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 3 cut(s) 46, 213, 575
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 497
BlsI GCNGC 1 cut(s) 498
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 86, 423
BmrFI CCNGG 1 cut(s) 305
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 370, 508
BmuI ACTGGG 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 263
BsaI GGTCTC 2 cut(s) 46, 575
BsaJI CCNNGG 1 cut(s) 584
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse118I RCCGGY 1 cut(s) 396
Bse1I ACTGG 3 cut(s) 41, 136, 566
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 584
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 263
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 3 cut(s) 41, 136, 566
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 508
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 397
BsmAI GTCTC 3 cut(s) 46, 213, 575
Bso31I GGTCTC 2 cut(s) 46, 575
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 5 cut(s) 31, 106, 183, 249, 264
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 86, 423
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 2 cut(s) 46, 575
BsrFI RCCGGY 1 cut(s) 396
BsrI ACTGG 3 cut(s) 41, 136, 566
BssAI RCCGGY 1 cut(s) 396
BssECI CCNNGG 1 cut(s) 584
BssMI GATC 5 cut(s) 31, 106, 183, 249, 264
BssT1I CCWWGG 1 cut(s) 584
Bst2UI CCWGG 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 398, 556
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 5 cut(s) 34, 109, 186, 252, 267
BstMAI GTCTC 3 cut(s) 46, 213, 575
BstMBI GATC 5 cut(s) 31, 106, 183, 249, 264
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 508
BstXI CCANNNNNNTGG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 3 cut(s) 34, 121, 237
Cac8I GCNNGC 2 cut(s) 398, 556
CaiI CAGNNNCTG 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 396
Csp6I GTAC 3 cut(s) 85, 168, 301
CviAII CATG 1 cut(s) 438
CviQI GTAC 3 cut(s) 85, 168, 301
DdeI CTNAG 1 cut(s) 333
DpnI GATC 5 cut(s) 33, 108, 185, 251, 266
DpnII GATC 5 cut(s) 31, 106, 183, 249, 264
Eco130I CCWWGG 1 cut(s) 584
Eco31I GGTCTC 2 cut(s) 46, 575
Eco57I CTGAAG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 584
ErhI CCWWGG 1 cut(s) 584
FaeI CATG 1 cut(s) 441
FaiI YATR 5 cut(s) 53, 369, 439, 536, 605
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 1 cut(s) 437
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 497
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 497
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 497
HapII CCGG 1 cut(s) 397
Hin1II CATG 1 cut(s) 441
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 65, 178
HpaII CCGG 1 cut(s) 397
HphI GGTGA 3 cut(s) 178, 259, 359
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 6 cut(s) 27, 183, 295, 387, 504, 578
Hpy188III TCNNGA 7 cut(s) 62, 104, 151, 214, 253, 268, 512
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 6, 438
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 2 cut(s) 159, 441
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 1 cut(s) 441
KpnI GGTACC 1 cut(s) 88
KroI GCCGGC 1 cut(s) 396
KroNI GCCGGC 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 5 cut(s) 31, 106, 183, 249, 264
LmnI GCTCC 2 cut(s) 131, 461
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 2 cut(s) 370, 508
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 609
MalI GATC 5 cut(s) 33, 108, 185, 251, 266
MboI GATC 5 cut(s) 31, 106, 183, 249, 264
MboII GAAGA 9 cut(s) 202, 214, 268, 274, 370, 389, 423, 550, 556
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 3 cut(s) 141, 485, 505
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 2 cut(s) 238, 483
MroNI GCCGGC 1 cut(s) 396
MroXI GAANNNNTTC 2 cut(s) 206, 209
MseI TTAA 2 cut(s) 17, 140
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 1 cut(s) 397
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
NaeI GCCGGC 1 cut(s) 398
NdeII GATC 5 cut(s) 31, 106, 183, 249, 264
NgoMIV GCCGGC 1 cut(s) 396
NlaIII CATG 1 cut(s) 441
NlaIV GGNNCC 2 cut(s) 86, 423
PdiI GCCGGC 1 cut(s) 398
PdmI GAANNNNTTC 2 cut(s) 206, 209
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 498
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 86, 423
PstNI CAGNNNCTG 1 cut(s) 502
RsaI GTAC 3 cut(s) 86, 169, 302
RsaNI GTAC 3 cut(s) 85, 168, 301
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 2 cut(s) 17, 140
SatI GCNGC 1 cut(s) 497
Sau3AI GATC 5 cut(s) 31, 106, 183, 249, 264
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 161
SfaNI GCATC 2 cut(s) 370, 508
SfcI CTRYAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 3 cut(s) 141, 485, 505
SspI AATATT 1 cut(s) 526
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 584
TaiI ACGT 1 cut(s) 612
TaqI TCGA 4 cut(s) 105, 150, 213, 252
TasI AATT 3 cut(s) 141, 485, 505
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 17, 140
Tru9I TTAA 2 cut(s) 17, 140
TscAI CASTG 3 cut(s) 41, 128, 244
TseI GCWGC 1 cut(s) 496
TspDTI ATGAA 3 cut(s) 275, 551, 557
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 3 cut(s) 41, 128, 244
VneI GTGCAC 1 cut(s) 157
XmnI GAANNNNTTC 2 cut(s) 206, 209
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.