Rw1G030930

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
58940921 .. 58943155
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G030930.1

Sequence Viewer

Length: 861 bp
ATGGAGGACGCCGTTTCGATTCACCCTACGCTCTGTCGAAACGACGCTTCCGACTCCGATGGATGCCACTTCTACGGTGTTTACGACGGCCACGGTTGCTCTCATGTTGCGTTGAAGTGCAAGGACAGATTACATGAGATCGTGAAAGAAGACCTGGAAAGACAGAGCGTTGTTCAATGGAAGGACACCATGGAGCGAAGCTTCTCGAAAATGGACCAAGAGGTCGAGGCCGGGAACCAAGTCCTTCAGAGTCCCAACTGCAGATGCGAGCTCCAAACTCCGCAGTGCGACGCCGTGGGGTCCACCGCCGTCGTGGCGGTGGTGACTCCGGAGAAGATCATCGTCTCCAATTGCGGCGACTCCCGCGCCGTGCTCTGCCGGGGCGGCGCCGCCGTGCCTCTCTCCTCCGATCATAAGCCTGACCGACCAGACGAGCTGCACCGGATCGAAGCCGCCGGAGGGCGCGTGATCTACTGGGACGGCCCTAGAGTCCTCGGAGTGCTCGCCATGTCGCGAGCCATCGGCGACAACTATCTCAAACCGTACGTTATATCGGAGCCGGAGGTGACGATCATGGACCGGACGGCGGAGGACGAGTGTTTGATTCTGGCCAGCGACGGCCTTTGGGACGTCGTCTCAAACGACACCGCTTGCGGCGTCGCACGCATGTGCCTGCGCGCGCAGAAGACGCGAGGAGCTTCGGGCGGTGACGTGGCGGACGGGGAGTCGTCGGGCGGCGAGAATTCCGACAAGGCGTGCGCCGACGCCTCCATTCTGCTGACGAAGCTGGCCCTGGCGAGGCAGAGTTCGGATAACGTCAGCGTGGTGGTGGTGGATTTGAGGAGGCATGAGAGATCGTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

286

Amino Acids

30.89

Weight (kDa)

5.0

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 1 - 240 5.5e-62 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
AatII GACGTC 1 cut(s) 633
AccB1I GGYRCC 1 cut(s) 386
AccII CGCG 6 cut(s) 366, 465, 514, 678, 680, 691
AccIII TCCGGA 1 cut(s) 328
AclWI GGATC 1 cut(s) 452
AcoI YGGCCR 2 cut(s) 88, 609
AcsI RAATTY 1 cut(s) 742
AcuI CTGAAG 1 cut(s) 230
AcyI GRCGYC 6 cut(s) 9, 291, 387, 630, 657, 765
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 3 cut(s) 459, 586, 798
AgsI TTSAA 2 cut(s) 115, 176
AhdI GACNNNNNGTC 1 cut(s) 724
AjiI CACGTC 1 cut(s) 712
AjnI CCWGG 2 cut(s) 153, 792
AleI CACNNNNGTG 1 cut(s) 667
AluBI AGCT 5 cut(s) 201, 271, 436, 698, 787
AluI AGCT 5 cut(s) 201, 271, 436, 698, 787
Alw21I GWGCWC 3 cut(s) 273, 375, 504
Alw26I GTCTC 2 cut(s) 349, 640
AlwI GGATC 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 6 cut(s) 88, 228, 481, 609, 619, 789
ApeKI GCWGC 1 cut(s) 436
ApoI RAATTY 1 cut(s) 742
AspLEI GCGC 7 cut(s) 368, 389, 465, 678, 680, 682, 761
AspS9I GGNCC 5 cut(s) 214, 300, 482, 577, 790
AsuC2I CCSGG 2 cut(s) 232, 380
AsuHPI GGTGA 4 cut(s) 14, 334, 577, 719
AvaII GGWCC 3 cut(s) 214, 300, 577
BalI TGGCCA 1 cut(s) 611
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 156, 692
Bbv12I GWGCWC 3 cut(s) 273, 375, 504
BbvI GCAGC 1 cut(s) 423
BccI CCATC 2 cut(s) 53, 527
BceAI ACGGC 8 cut(s) 103, 278, 293, 353, 377, 496, 600, 634
BciT130I CCWGG 2 cut(s) 155, 794
BcnI CCSGG 2 cut(s) 232, 380
BcoDI GTCTC 2 cut(s) 349, 640
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 259
BfoI RGCGCY 1 cut(s) 390
BglI GCCNNNNNGGC 2 cut(s) 314, 384
BisI GCNGC 7 cut(s) 355, 385, 390, 437, 453, 655, 736
BlsI GCNGC 7 cut(s) 356, 386, 391, 438, 454, 656, 737
Bme1390I CCNGG 4 cut(s) 155, 232, 380, 794
Bme18I GGWCC 3 cut(s) 214, 300, 577
BmeRI GACNNNNNGTC 1 cut(s) 724
BmgBI CACGTC 1 cut(s) 712
BmgT120I GGNCC 5 cut(s) 214, 300, 482, 577, 790
BmiI GGNNCC 4 cut(s) 236, 301, 388, 558
BmrFI CCNGG 4 cut(s) 155, 232, 380, 794
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 2 cut(s) 53, 254
BmuI ACTGGG 1 cut(s) 484
BpiI GAAGAC 2 cut(s) 156, 692
BpuMI CCSGG 2 cut(s) 232, 380
BsaHI GRCGYC 6 cut(s) 9, 291, 387, 630, 657, 765
BsaJI CCNNGG 6 cut(s) 91, 189, 294, 379, 493, 792
BsaWI WCCGGW 3 cut(s) 328, 441, 579
BsaXI ACNNNNNCTCC 4 cut(s) 450, 480, 581, 611
Bsc4I CCNNNNNNNGG 3 cut(s) 459, 586, 798
Bse1I ACTGG 1 cut(s) 479
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 2 cut(s) 155, 794
BseDI CCNNGG 6 cut(s) 91, 189, 294, 379, 493, 792
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 3 cut(s) 459, 586, 798
BseNI ACTGG 1 cut(s) 479
BsePI GCGCGC 2 cut(s) 676, 678
BseRI GAGGAG 3 cut(s) 394, 708, 856
BseXI GCAGC 1 cut(s) 423
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 6 cut(s) 366, 465, 514, 678, 680, 691
BshFI GGCC 6 cut(s) 90, 230, 483, 611, 621, 791
BshNI GGYRCC 1 cut(s) 386
BsiHKAI GWGCWC 3 cut(s) 273, 375, 504
BsiSI CCGG 7 cut(s) 231, 329, 379, 442, 456, 560, 580
BsiWI CGTACG 1 cut(s) 543
BslFI GGGAC 3 cut(s) 237, 491, 641
BslI CCNNNNNNNGG 3 cut(s) 459, 586, 798
BsmAI GTCTC 2 cut(s) 349, 640
BsmBI CGTCTC 2 cut(s) 349, 640
BsmFI GGGAC 3 cut(s) 237, 491, 641
BsnI GGCC 6 cut(s) 90, 230, 483, 611, 621, 791
Bsp1286I GDGCHC 3 cut(s) 273, 375, 504
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 7 cut(s) 138, 336, 409, 444, 468, 570, 854
Bsp19I CCATGG 1 cut(s) 189
Bsp68I TCGCGA 1 cut(s) 514
BspANI GGCC 6 cut(s) 90, 230, 483, 611, 621, 791
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 6 cut(s) 366, 465, 514, 678, 680, 691
BspLI GGNNCC 4 cut(s) 236, 301, 388, 558
BspMAI CTGCAG 1 cut(s) 263
BspPI GGATC 1 cut(s) 452
BspT107I GGYRCC 1 cut(s) 386
BsrI ACTGG 1 cut(s) 479
BssECI CCNNGG 6 cut(s) 91, 189, 294, 379, 493, 792
BssHII GCGCGC 2 cut(s) 676, 678
BssMI GATC 7 cut(s) 138, 336, 409, 444, 468, 570, 854
BssNI GRCGYC 6 cut(s) 9, 291, 387, 630, 657, 765
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 155, 794
Bst4CI ACNGT 3 cut(s) 77, 95, 543
BstACI GRCGYC 6 cut(s) 9, 291, 387, 630, 657, 765
BstDSI CCRYGG 3 cut(s) 91, 189, 294
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 6 cut(s) 366, 465, 514, 678, 680, 691
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 7 cut(s) 368, 389, 465, 678, 680, 682, 761
BstKTI GATC 7 cut(s) 141, 339, 412, 447, 471, 573, 857
BstMAI GTCTC 2 cut(s) 349, 640
BstMBI GATC 7 cut(s) 138, 336, 409, 444, 468, 570, 854
BstMWI GCNNNNNNNGC 7 cut(s) 96, 314, 363, 384, 663, 688, 784
BstNI CCWGG 2 cut(s) 155, 794
BstNSI RCATGY 1 cut(s) 670
BstSCI CCNGG 4 cut(s) 153, 230, 378, 792
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 6 cut(s) 366, 465, 514, 678, 680, 691
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 2 cut(s) 156, 692
BsuRI GGCC 6 cut(s) 90, 230, 483, 611, 621, 791
BtgI CCRYGG 3 cut(s) 91, 189, 294
BtrI CACGTC 1 cut(s) 712
BtsCI GGATG 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
BtuMI TCGCGA 1 cut(s) 514
CfoI GCGC 7 cut(s) 368, 389, 465, 678, 680, 682, 761
Cfr13I GGNCC 5 cut(s) 214, 300, 482, 577, 790
CseI GACGC 6 cut(s) 17, 53, 299, 646, 697, 773
Csp6I GTAC 1 cut(s) 544
CviAII CATG 7 cut(s) 104, 134, 190, 508, 574, 667, 848
CviQI GTAC 1 cut(s) 544
DinI GGCGCC 1 cut(s) 388
DpnI GATC 7 cut(s) 140, 338, 411, 446, 470, 572, 856
DpnII GATC 7 cut(s) 138, 336, 409, 444, 468, 570, 854
DrdI GACNNNNNNGTC 1 cut(s) 221
DriI GACNNNNNGTC 1 cut(s) 724
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 2 cut(s) 88, 609
Eam1105I GACNNNNNGTC 1 cut(s) 724
EciI GGCGGA 2 cut(s) 602, 731
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 3 cut(s) 214, 300, 577
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 742
EcoRII CCWGG 2 cut(s) 153, 792
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 388
EheI GGCGCC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 189
Esp3I CGTCTC 2 cut(s) 349, 640
FaeI CATG 7 cut(s) 107, 137, 193, 511, 577, 670, 851
FaiI YATR 9 cut(s) 105, 135, 191, 414, 509, 551, 575, 668, 849
FaqI GGGAC 3 cut(s) 237, 491, 641
FatI CATG 7 cut(s) 103, 133, 189, 507, 573, 666, 847
FauI CCCGC 1 cut(s) 371
Fnu4HI GCNGC 7 cut(s) 355, 385, 390, 437, 453, 655, 736
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 7 cut(s) 355, 385, 390, 437, 453, 655, 736
FspBI CTAG 1 cut(s) 486
GlaI GCGC 7 cut(s) 367, 388, 464, 677, 679, 681, 760
GluI GCNGC 7 cut(s) 355, 385, 390, 437, 453, 655, 736
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 6 cut(s) 90, 230, 483, 611, 621, 791
HapII CCGG 7 cut(s) 231, 329, 379, 442, 456, 560, 580
HgaI GACGC 6 cut(s) 17, 53, 299, 646, 697, 773
HhaI GCGC 7 cut(s) 368, 389, 465, 678, 680, 682, 761
Hin1I GRCGYC 6 cut(s) 9, 291, 387, 630, 657, 765
Hin1II CATG 7 cut(s) 107, 137, 193, 511, 577, 670, 851
Hin6I GCGC 7 cut(s) 366, 387, 463, 676, 678, 680, 759
HinP1I GCGC 7 cut(s) 366, 387, 463, 676, 678, 680, 759
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 8 cut(s) 19, 53, 250, 325, 359, 489, 604, 725
HpaII CCGG 7 cut(s) 231, 329, 379, 442, 456, 560, 580
HphI GGTGA 4 cut(s) 14, 334, 577, 719
Hpy166II GTNNAC 2 cut(s) 82, 303
Hpy188I TCNGA 8 cut(s) 52, 58, 249, 409, 497, 556, 748, 811
Hpy188III TCNNGA 5 cut(s) 142, 205, 329, 513, 858
Hpy8I GTNNAC 2 cut(s) 82, 303
Hpy99I CGWCG 9 cut(s) 47, 89, 293, 314, 620, 635, 662, 733, 767
HpyAV CCTTC 2 cut(s) 175, 254
HpyCH4III ACNGT 3 cut(s) 77, 95, 543
HpyCH4IV ACGT 4 cut(s) 546, 630, 711, 816
HpyCH4V TGCA 3 cut(s) 120, 261, 439
HpyF10VI GCNNNNNNNGC 7 cut(s) 96, 314, 363, 384, 663, 688, 784
HpySE526I ACGT 4 cut(s) 546, 630, 711, 816
Hsp92I GRCGYC 6 cut(s) 9, 291, 387, 630, 657, 765
Hsp92II CATG 7 cut(s) 107, 137, 193, 511, 577, 670, 851
HspAI GCGC 7 cut(s) 366, 387, 463, 676, 678, 680, 759
KasI GGCGCC 1 cut(s) 386
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 7 cut(s) 138, 336, 409, 444, 468, 570, 854
LmnI GCTCC 4 cut(s) 193, 276, 556, 695
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 2 cut(s) 53, 254
MaeI CTAG 1 cut(s) 486
MaeII ACGT 4 cut(s) 546, 630, 711, 816
MaeIII GTNAC 3 cut(s) 322, 565, 707
MalI GATC 7 cut(s) 140, 338, 411, 446, 470, 572, 856
MboI GATC 7 cut(s) 138, 336, 409, 444, 468, 570, 854
MboII GAAGA 3 cut(s) 161, 346, 697
MfeI CAATTG 1 cut(s) 349
MhlI GDGCHC 3 cut(s) 273, 375, 504
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 2 cut(s) 349, 742
MluNI TGGCCA 1 cut(s) 611
Mly113I GGCGCC 1 cut(s) 387
MlyI GAGTC 6 cut(s) 47, 259, 319, 353, 498, 734
MmeI TCCRAC 2 cut(s) 75, 771
Mox20I TGGCCA 1 cut(s) 611
MroI TCCGGA 1 cut(s) 328
MscI TGGCCA 1 cut(s) 611
MslI CAYNNNNRTG 1 cut(s) 667
Msp20I TGGCCA 1 cut(s) 611
MspI CCGG 7 cut(s) 231, 329, 379, 442, 456, 560, 580
MspR9I CCNGG 4 cut(s) 155, 232, 380, 794
MunI CAATTG 1 cut(s) 349
MvaI CCWGG 2 cut(s) 155, 794
MvnI CGCG 6 cut(s) 366, 465, 514, 678, 680, 691
MwoI GCNNNNNNNGC 7 cut(s) 96, 314, 363, 384, 663, 688, 784
NarI GGCGCC 1 cut(s) 387
NciI CCSGG 2 cut(s) 232, 380
NcoI CCATGG 1 cut(s) 189
NdeII GATC 7 cut(s) 138, 336, 409, 444, 468, 570, 854
NlaIII CATG 7 cut(s) 107, 137, 193, 511, 577, 670, 851
NlaIV GGNNCC 4 cut(s) 236, 301, 388, 558
NmuCI GTSAC 3 cut(s) 322, 565, 707
NruI TCGCGA 1 cut(s) 514
NspI RCATGY 1 cut(s) 670
OliI CACNNNNGTG 1 cut(s) 667
PauI GCGCGC 2 cut(s) 676, 678
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 81, 639
PfeI GAWTC 2 cut(s) 19, 604
Pfl23II CGTACG 1 cut(s) 543
PflFI GACNNNGTC 1 cut(s) 632
PkrI GCNGC 7 cut(s) 356, 386, 391, 438, 454, 656, 737
PleI GAGTC 6 cut(s) 47, 258, 319, 353, 497, 733
PluTI GGCGCC 1 cut(s) 390
PpsI GAGTC 6 cut(s) 47, 258, 319, 353, 497, 733
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 153, 792
PspGI CCWGG 2 cut(s) 153, 792
PspLI CGTACG 1 cut(s) 543
PspN4I GGNNCC 4 cut(s) 236, 301, 388, 558
PspPI GGNCC 5 cut(s) 214, 300, 482, 577, 790
PstI CTGCAG 1 cut(s) 263
PsyI GACNNNGTC 1 cut(s) 632
PteI GCGCGC 2 cut(s) 676, 678
RruI TCGCGA 1 cut(s) 514
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 667
SacI GAGCTC 1 cut(s) 273
SatI GCNGC 7 cut(s) 355, 385, 390, 437, 453, 655, 736
Sau3AI GATC 7 cut(s) 138, 336, 409, 444, 468, 570, 854
Sau96I GGNCC 5 cut(s) 214, 300, 482, 577, 790
SchI GAGTC 6 cut(s) 47, 259, 319, 353, 498, 734
ScrFI CCNGG 4 cut(s) 155, 232, 380, 794
SduI GDGCHC 3 cut(s) 273, 375, 504
SfaNI GCATC 2 cut(s) 53, 254
SfcI CTRYAG 1 cut(s) 259
SfoI GGCGCC 1 cut(s) 388
SinI GGWCC 3 cut(s) 214, 300, 577
SmiMI CAYNNNNRTG 1 cut(s) 667
Sse9I AATT 2 cut(s) 349, 742
SspDI GGCGCC 1 cut(s) 386
SspMI CTAG 1 cut(s) 486
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 4 cut(s) 153, 230, 378, 792
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 3 cut(s) 77, 95, 543
TaiI ACGT 4 cut(s) 549, 633, 714, 819
TaqI TCGA 5 cut(s) 17, 37, 206, 225, 447
TaqII GACCGA 1 cut(s) 438
TasI AATT 2 cut(s) 349, 742
TauI GCSGC 6 cut(s) 357, 387, 392, 455, 657, 738
TfiI GAWTC 2 cut(s) 19, 604
TscAI CASTG 1 cut(s) 290
TseFI GTSAC 3 cut(s) 322, 565, 707
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 3 cut(s) 322, 565, 707
TspRI CASTG 1 cut(s) 290
Tth111I GACNNNGTC 1 cut(s) 632
VpaK11BI GGWCC 3 cut(s) 214, 300, 577
XapI RAATTY 1 cut(s) 742
XceI RCATGY 1 cut(s) 670
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XspI CTAG 1 cut(s) 486
ZraI GACGTC 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.