Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395895.1

Orthogroup ID

OG0009891

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 519

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395895.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggctggaatttgctgcggtctagttggagaaaccgagacttcagctccgattgaaccaagctcccggacctcgagacgccggagattggatcttttgtcgattaagtgtattgccgccgatcacatggcgctgcagcaggcggtggataacggccggaagcggcagaagcttgatctgttgcggtccttgtctcgggactgcgaaaaacgtgaagtgtcagacgcaactatgcgtttggatggcgaggaggcggttatttcacgtggagagtccaaagctttgcatgcggaaaacgaagtggtcgttccgcagcgggtggtgcgggaacccccgcgcttcggttgcacttcggtttgcggaaggagaagagatatggaggacgccgtttcgattcaccctacgctctgtcgaaacgacgcttccgactccgatggatgccacttctacggtgtttacgacggccacggttgctctcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010359 GO:0010360 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1903792 GO:1903959 GO:1903960 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

160

Amino Acids

17.68

Weight (kDa)

6.59

Isoelectric Point (pI)

65.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11410
fragaria_vesca	FvH4_7g23060
malus_domestica	MD01G1139200.v1.1 MD07G1203700.v1.1
prunus_persica	Prupe.2G239700_v2.0.a1 Prupe.2G239700_v2.0.a1
pyrus_communis	pycom01g15980 pycom07g19030
rosa_chinensis	RchiOBHm_Chr1g0368301
rosa_laevigata	RLG00000027222
rosa_multiflora	Rmu_co8395895.1_g000001 Rmu_sc0002709.1_g000052 Rmu_sc0009391.1_g000002 Rmu_sc0035413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288670
rosa_rugosa	Rorug01G0340000
rosa_samantha	Rh1AG347500 Rh1BG310500 Rh1CG325900 Rh1DG342300
rosa_wichuraiana	Rw1G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	337
AclWI	GGATC	1 cut(s)	99
AcoI	YGGCCR	2 cut(s)	154, 463
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	27
AcvI	CACGTG	1 cut(s)	266
AcyI	GRCGYC	2 cut(s)	79, 384
AfiI	CCNNNNNNNGG	3 cut(s)	88, 195, 341
AgsI	TTSAA	1 cut(s)	56
AluBI	AGCT	4 cut(s)	47, 63, 172, 281
AluI	AGCT	4 cut(s)	47, 63, 172, 281
Alw26I	GTCTC	3 cut(s)	32, 70, 198
AlwI	GGATC	1 cut(s)	99
Ama87I	CYCGRG	2 cut(s)	73, 195
AoxI	GGCC	2 cut(s)	154, 463
ApeKI	GCWGC	4 cut(s)	15, 133, 136, 313
ApoI	RAATTY	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	133, 339
AspS9I	GGNCC	2 cut(s)	69, 186
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	2 cut(s)	73, 195
AvaII	GGWCC	2 cut(s)	69, 186
BbrPI	CACGTG	1 cut(s)	266
BbvI	GCAGC	4 cut(s)	2, 120, 148, 325
BccI	CCATC	2 cut(s)	236, 428
BceAI	ACGGC	3 cut(s)	169, 371, 478
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	3 cut(s)	32, 70, 198
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	134
BisI	GCNGC	6 cut(s)	16, 117, 134, 137, 164, 314
BlsI	GCNGC	6 cut(s)	17, 118, 135, 138, 165, 315
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	2 cut(s)	69, 186
BmeT110I	CYCGRG	2 cut(s)	73, 195
BmgT120I	GGNCC	2 cut(s)	69, 186
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	266
BsaHI	GRCGYC	2 cut(s)	79, 384
BsaJI	CCNNGG	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 195, 341
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	2 cut(s)	247, 443
BseLI	CCNNNNNNNGG	3 cut(s)	88, 195, 341
BseRI	GAGGAG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	154
BseXI	GCAGC	4 cut(s)	2, 120, 148, 325
Bsh1236I	CGCG	1 cut(s)	337
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	156, 465
BsiEI	CGRYCG	1 cut(s)	157
BsiHKCI	CYCGRG	2 cut(s)	73, 195
BsiSI	CCGG	3 cut(s)	67, 82, 157
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	88, 195, 341
BsmAI	GTCTC	3 cut(s)	32, 70, 198
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	156, 465
BsoBI	CYCGRG	2 cut(s)	73, 195
Bsp143I	GATC	3 cut(s)	91, 121, 175
BspANI	GGCC	2 cut(s)	156, 465
BspFNI	CGCG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	3 cut(s)	91, 121, 175
BssNI	GRCGYC	2 cut(s)	79, 384
Bst4CI	ACNGT	2 cut(s)	452, 470
Bst6I	CTCTTC	1 cut(s)	364
BstACI	GRCGYC	2 cut(s)	79, 384
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	141, 288
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	247, 443
BstFNI	CGCG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	2 cut(s)	133, 339
BstKTI	GATC	3 cut(s)	94, 124, 178
BstMAI	GTCTC	3 cut(s)	32, 70, 198
BstMBI	GATC	3 cut(s)	91, 121, 175
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	5 cut(s)	169, 287, 322, 345, 471
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	134
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	4 cut(s)	2, 120, 148, 325
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BstZI	CGGCCG	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	156, 465
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	247, 443
Cac8I	GCNNGC	2 cut(s)	141, 288
CfoI	GCGC	2 cut(s)	133, 339
Cfr13I	GGNCC	2 cut(s)	69, 186
CseI	GACGC	4 cut(s)	87, 233, 392, 428
CviAII	CATG	2 cut(s)	127, 287
CviJI	RGCY	7 cut(s)	5, 47, 63, 156, 172, 281, 465
CviKI_1	RGCY	7 cut(s)	5, 47, 63, 156, 172, 281, 465
DpnI	GATC	3 cut(s)	93, 123, 177
DpnII	GATC	3 cut(s)	91, 121, 175
EaeI	YGGCCR	2 cut(s)	154, 463
EagI	CGGCCG	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
EclXI	CGGCCG	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	69, 186
Eco52I	CGGCCG	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	27
Eco72I	CACGTG	1 cut(s)	266
Eco88I	CYCGRG	2 cut(s)	73, 195
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	2 cut(s)	130, 290
FaiI	YATR	4 cut(s)	128, 233, 288, 377
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	126, 286
FauI	CCCGC	3 cut(s)	309, 318, 342
Fnu4HI	GCNGC	6 cut(s)	16, 117, 134, 137, 164, 314
FokI	GGATG	2 cut(s)	254, 450
Fsp4HI	GCNGC	6 cut(s)	16, 117, 134, 137, 164, 314
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	2 cut(s)	132, 338
GluI	GCNGC	6 cut(s)	16, 117, 134, 137, 164, 314
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	156, 465
HapII	CCGG	3 cut(s)	67, 82, 157
HgaI	GACGC	4 cut(s)	87, 233, 392, 428
HhaI	GCGC	2 cut(s)	133, 339
Hin1I	GRCGYC	2 cut(s)	79, 384
Hin1II	CATG	2 cut(s)	130, 290
Hin6I	GCGC	2 cut(s)	131, 337
HinP1I	GCGC	2 cut(s)	131, 337
HindIII	AAGCTT	2 cut(s)	170, 279
HinfI	GANTC	3 cut(s)	272, 394, 428
HpaII	CCGG	3 cut(s)	67, 82, 157
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	4 cut(s)	51, 223, 427, 433
Hpy188III	TCNNGA	2 cut(s)	75, 197
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	2 cut(s)	422, 464
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	2 cut(s)	452, 470
HpyCH4IV	ACGT	2 cut(s)	211, 265
HpyCH4V	TGCA	3 cut(s)	136, 286, 348
HpyF10VI	GCNNNNNNNGC	5 cut(s)	169, 287, 322, 345, 471
HpySE526I	ACGT	2 cut(s)	211, 265
Hsp92I	GRCGYC	2 cut(s)	79, 384
Hsp92II	CATG	2 cut(s)	130, 290
HspAI	GCGC	2 cut(s)	131, 337
Kzo9I	GATC	3 cut(s)	91, 121, 175
LmnI	GCTCC	2 cut(s)	52, 68
LpnPI	CCDG	4 cut(s)	80, 95, 125, 170
Lsp1109I	GCAGC	4 cut(s)	2, 120, 148, 325
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	2 cut(s)	211, 265
MalI	GATC	3 cut(s)	93, 123, 177
MboI	GATC	3 cut(s)	91, 121, 175
MboII	GAAGA	1 cut(s)	381
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	1 cut(s)	9
MlyI	GAGTC	2 cut(s)	281, 422
MmeI	TCCRAC	2 cut(s)	7, 450
MnlI	CCTC	4 cut(s)	82, 241, 244, 373
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	3 cut(s)	67, 82, 157
MspR9I	CCNGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	5 cut(s)	169, 287, 322, 345, 471
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	3 cut(s)	91, 121, 175
NlaIII	CATG	2 cut(s)	130, 290
NlaIV	GGNNCC	1 cut(s)	330
NspI	RCATGY	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	290
PaeR7I	CTCGAG	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	3 cut(s)	303, 423, 456
PfeI	GAWTC	1 cut(s)	394
PfoI	TCCNGGA	1 cut(s)	65
PkrI	GCNGC	6 cut(s)	17, 118, 135, 138, 165, 315
PleI	GAGTC	2 cut(s)	280, 422
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
PpsI	GAGTC	2 cut(s)	280, 422
Ppu21I	YACGTR	1 cut(s)	266
PspCI	CACGTG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	69, 186
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	6 cut(s)	16, 117, 134, 137, 164, 314
Sau3AI	GATC	3 cut(s)	91, 121, 175
Sau96I	GGNCC	2 cut(s)	69, 186
SchI	GAGTC	2 cut(s)	281, 422
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	7 cut(s)	49, 65, 74, 174, 214, 268, 283
SfaNI	GCATC	1 cut(s)	428
SfcI	CTRYAG	1 cut(s)	134
Sfr274I	CTCGAG	1 cut(s)	73
SinI	GGWCC	2 cut(s)	69, 186
SlaI	CTCGAG	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	452, 470
TaiI	ACGT	2 cut(s)	214, 268
TaqI	TCGA	4 cut(s)	74, 101, 392, 412
TasI	AATT	1 cut(s)	9
TauI	GCSGC	2 cut(s)	119, 166
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseI	GCWGC	4 cut(s)	15, 133, 136, 313
VpaK11BI	GGWCC	2 cut(s)	69, 186
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	1 cut(s)	290
XhoI	CTCGAG	1 cut(s)	73
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.