Rmu_sc0035413.1_g000001

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035413.1
OG0009891
Physical Location & Seq
Reverse (-)
2 .. 656
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035413.1_g000001.1.cds

Sequence Viewer

Length: 518 bp
atggaccaagaggtcgaggccgggaaccaagtccttcagagtcccaactgcagatgcgagctccaaactccgcagtgcgacgccgtggggtccaccgccgtcgtggcggtggtgactccggagaagatcatcgtctccaattgcggcgactcccgcgccgtactctgccggggcggcgcggccgtgcctctctcctccgatcataagcctgaccgaccagacgagctgcaccggatcgaagccgccggagggcgcgtgatctactgggacggccctagagtcctcggagtgctcgccatgtcgcgagccatcggcgacaactatctcaaaccgtacgttatatcggagccggaggtgacgatcatggaccggacggcggaggacgagtgtttgattctggccagcgacggcctttgggacgtcgtctcaaacgacacagcttgcggcgtcgcacgcatgtgcctgcgcgcgcagaagacgcgaggagcttcgggcggtgacgtggcggacggggagtc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010359 GO:0010360 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1903792 GO:1903959 GO:1903960 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

173

Amino Acids

18.34

Weight (kDa)

4.59

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AatII GACGTC 1 cut(s) 423
AccII CGCG 7 cut(s) 156, 179, 255, 304, 468, 470, 481
AccIII TCCGGA 1 cut(s) 118
AclWI GGATC 1 cut(s) 242
AcoI YGGCCR 2 cut(s) 180, 399
AcuI CTGAAG 1 cut(s) 20
AcyI GRCGYC 3 cut(s) 81, 420, 447
AfaI GTAC 2 cut(s) 162, 335
AfiI CCNNNNNNNGG 2 cut(s) 249, 376
AhdI GACNNNNNGTC 1 cut(s) 514
AjiI CACGTC 1 cut(s) 502
AleI CACNNNNGTG 1 cut(s) 457
AluBI AGCT 4 cut(s) 61, 226, 440, 488
AluI AGCT 4 cut(s) 61, 226, 440, 488
Alw21I GWGCWC 2 cut(s) 63, 294
Alw26I GTCTC 2 cut(s) 139, 430
AlwI GGATC 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 5 cut(s) 18, 180, 271, 399, 409
ApeKI GCWGC 1 cut(s) 226
AspLEI GCGC 6 cut(s) 158, 179, 255, 468, 470, 472
AspS9I GGNCC 4 cut(s) 4, 90, 272, 367
AsuC2I CCSGG 2 cut(s) 22, 170
AsuHPI GGTGA 3 cut(s) 124, 367, 509
AvaII GGWCC 3 cut(s) 4, 90, 367
BalI TGGCCA 1 cut(s) 401
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 2 cut(s) 63, 294
BbvI GCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 317
BceAI ACGGC 7 cut(s) 68, 83, 143, 167, 286, 390, 424
BcnI CCSGG 2 cut(s) 22, 170
BcoDI GTCTC 2 cut(s) 139, 430
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 49
BglI GCCNNNNNGGC 2 cut(s) 104, 174
BisI GCNGC 6 cut(s) 145, 175, 180, 227, 243, 445
BlsI GCNGC 6 cut(s) 146, 176, 181, 228, 244, 446
Bme1390I CCNGG 2 cut(s) 22, 170
Bme18I GGWCC 3 cut(s) 4, 90, 367
BmeRI GACNNNNNGTC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 502
BmgT120I GGNCC 4 cut(s) 4, 90, 272, 367
BmiI GGNNCC 3 cut(s) 26, 91, 348
BmrFI CCNGG 2 cut(s) 22, 170
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 482
BpuMI CCSGG 2 cut(s) 22, 170
BsaHI GRCGYC 3 cut(s) 81, 420, 447
BsaJI CCNNGG 3 cut(s) 84, 169, 283
BsaWI WCCGGW 3 cut(s) 118, 231, 369
BsaXI ACNNNNNCTCC 4 cut(s) 240, 270, 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 376
Bse1I ACTGG 1 cut(s) 269
BseAI TCCGGA 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 84, 169, 283
BseLI CCNNNNNNNGG 2 cut(s) 249, 376
BseNI ACTGG 1 cut(s) 269
BsePI GCGCGC 2 cut(s) 466, 468
BseRI GAGGAG 2 cut(s) 184, 498
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 213
BsgI GTGCAG 1 cut(s) 212
Bsh1236I CGCG 7 cut(s) 156, 179, 255, 304, 468, 470, 481
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 5 cut(s) 20, 182, 273, 401, 411
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 2 cut(s) 63, 294
BsiSI CCGG 7 cut(s) 21, 119, 169, 232, 246, 350, 370
BsiWI CGTACG 1 cut(s) 333
BslFI GGGAC 3 cut(s) 27, 281, 431
BslI CCNNNNNNNGG 2 cut(s) 249, 376
BsmAI GTCTC 2 cut(s) 139, 430
BsmBI CGTCTC 2 cut(s) 139, 430
BsmFI GGGAC 3 cut(s) 27, 281, 431
BsnI GGCC 5 cut(s) 20, 182, 273, 401, 411
Bsp1286I GDGCHC 2 cut(s) 63, 294
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 5 cut(s) 126, 199, 234, 258, 360
Bsp68I TCGCGA 1 cut(s) 304
BspANI GGCC 5 cut(s) 20, 182, 273, 401, 411
BspEI TCCGGA 1 cut(s) 118
BspFNI CGCG 7 cut(s) 156, 179, 255, 304, 468, 470, 481
BspLI GGNNCC 3 cut(s) 26, 91, 348
BspMAI CTGCAG 1 cut(s) 53
BspPI GGATC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 3 cut(s) 84, 169, 283
BssHII GCGCGC 2 cut(s) 466, 468
BssMI GATC 5 cut(s) 126, 199, 234, 258, 360
BssNI GRCGYC 3 cut(s) 81, 420, 447
Bst4CI ACNGT 1 cut(s) 333
BstACI GRCGYC 3 cut(s) 81, 420, 447
BstC8I GCNNGC 9 cut(s) 59, 294, 306, 403, 442, 454, 464, 468, 470
BstDSI CCRYGG 1 cut(s) 84
BstFNI CGCG 7 cut(s) 156, 179, 255, 304, 468, 470, 481
BstHHI GCGC 6 cut(s) 158, 179, 255, 468, 470, 472
BstKTI GATC 5 cut(s) 129, 202, 237, 261, 363
BstMAI GTCTC 2 cut(s) 139, 430
BstMBI GATC 5 cut(s) 126, 199, 234, 258, 360
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 5 cut(s) 104, 153, 174, 453, 478
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 20, 168
BstSFI CTRYAG 1 cut(s) 49
BstUI CGCG 7 cut(s) 156, 179, 255, 304, 468, 470, 481
BstV1I GCAGC 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 482
BstZI CGGCCG 1 cut(s) 180
BsuRI GGCC 5 cut(s) 20, 182, 273, 401, 411
BtgI CCRYGG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 80
BtuMI TCGCGA 1 cut(s) 304
Cac8I GCNNGC 9 cut(s) 59, 294, 306, 403, 442, 454, 464, 468, 470
CfoI GCGC 6 cut(s) 158, 179, 255, 468, 470, 472
Cfr13I GGNCC 4 cut(s) 4, 90, 272, 367
CseI GACGC 3 cut(s) 89, 436, 487
Csp6I GTAC 2 cut(s) 161, 334
CviAII CATG 3 cut(s) 298, 364, 457
CviQI GTAC 2 cut(s) 161, 334
DpnI GATC 5 cut(s) 128, 201, 236, 260, 362
DpnII GATC 5 cut(s) 126, 199, 234, 258, 360
DrdI GACNNNNNNGTC 1 cut(s) 11
DriI GACNNNNNGTC 1 cut(s) 514
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 2 cut(s) 180, 399
EagI CGGCCG 1 cut(s) 180
Eam1105I GACNNNNNGTC 1 cut(s) 514
EciI GGCGGA 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 61
EclXI CGGCCG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 3 cut(s) 4, 90, 367
Eco52I CGGCCG 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 63
Esp3I CGTCTC 2 cut(s) 139, 430
FaeI CATG 3 cut(s) 301, 367, 460
FaiI YATR 5 cut(s) 204, 299, 341, 365, 458
FaqI GGGAC 3 cut(s) 27, 281, 431
FatI CATG 3 cut(s) 297, 363, 456
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 6 cut(s) 145, 175, 180, 227, 243, 445
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 6 cut(s) 145, 175, 180, 227, 243, 445
FspBI CTAG 1 cut(s) 276
GlaI GCGC 6 cut(s) 157, 178, 254, 467, 469, 471
GluI GCNGC 6 cut(s) 145, 175, 180, 227, 243, 445
HaeIII GGCC 5 cut(s) 20, 182, 273, 401, 411
HapII CCGG 7 cut(s) 21, 119, 169, 232, 246, 350, 370
HgaI GACGC 3 cut(s) 89, 436, 487
HhaI GCGC 6 cut(s) 158, 179, 255, 468, 470, 472
Hin1I GRCGYC 3 cut(s) 81, 420, 447
Hin1II CATG 3 cut(s) 301, 367, 460
Hin6I GCGC 6 cut(s) 156, 177, 253, 466, 468, 470
HinP1I GCGC 6 cut(s) 156, 177, 253, 466, 468, 470
HinfI GANTC 6 cut(s) 40, 115, 149, 279, 394, 515
HpaII CCGG 7 cut(s) 21, 119, 169, 232, 246, 350, 370
HphI GGTGA 3 cut(s) 124, 367, 509
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 4 cut(s) 39, 199, 287, 346
Hpy188III TCNNGA 2 cut(s) 119, 303
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 5 cut(s) 83, 104, 410, 425, 452
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 3 cut(s) 336, 420, 501
HpyCH4V TGCA 2 cut(s) 51, 229
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 153, 174, 453, 478
HpySE526I ACGT 3 cut(s) 336, 420, 501
Hsp92I GRCGYC 3 cut(s) 81, 420, 447
Hsp92II CATG 3 cut(s) 301, 367, 460
HspAI GCGC 6 cut(s) 156, 177, 253, 466, 468, 470
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 5 cut(s) 126, 199, 234, 258, 360
LmnI GCTCC 3 cut(s) 66, 346, 485
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 1 cut(s) 44
MaeI CTAG 1 cut(s) 276
MaeII ACGT 3 cut(s) 336, 420, 501
MaeIII GTNAC 3 cut(s) 112, 355, 497
MalI GATC 5 cut(s) 128, 201, 236, 260, 362
MboI GATC 5 cut(s) 126, 199, 234, 258, 360
MboII GAAGA 2 cut(s) 136, 487
MfeI CAATTG 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 63, 294
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 4 cut(s) 49, 109, 143, 288
MnlI CCTC 9 cut(s) 4, 10, 198, 205, 242, 293, 346, 373, 476
Mox20I TGGCCA 1 cut(s) 401
MroI TCCGGA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 401
MslI CAYNNNNRTG 1 cut(s) 457
Msp20I TGGCCA 1 cut(s) 401
MspI CCGG 7 cut(s) 21, 119, 169, 232, 246, 350, 370
MspR9I CCNGG 2 cut(s) 22, 170
MunI CAATTG 1 cut(s) 139
MvnI CGCG 7 cut(s) 156, 179, 255, 304, 468, 470, 481
MwoI GCNNNNNNNGC 5 cut(s) 104, 153, 174, 453, 478
NciI CCSGG 2 cut(s) 22, 170
NdeII GATC 5 cut(s) 126, 199, 234, 258, 360
NlaIII CATG 3 cut(s) 301, 367, 460
NlaIV GGNNCC 3 cut(s) 26, 91, 348
NmuCI GTSAC 3 cut(s) 112, 355, 497
NruI TCGCGA 1 cut(s) 304
NspI RCATGY 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 457
PauI GCGCGC 2 cut(s) 466, 468
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 1 cut(s) 394
Pfl23II CGTACG 1 cut(s) 333
PflFI GACNNNGTC 1 cut(s) 422
PkrI GCNGC 6 cut(s) 146, 176, 181, 228, 244, 446
PleI GAGTC 4 cut(s) 48, 109, 143, 287
PpsI GAGTC 4 cut(s) 48, 109, 143, 287
Psp124BI GAGCTC 1 cut(s) 63
PspLI CGTACG 1 cut(s) 333
PspN4I GGNNCC 3 cut(s) 26, 91, 348
PspPI GGNCC 4 cut(s) 4, 90, 272, 367
PstI CTGCAG 1 cut(s) 53
PsyI GACNNNGTC 1 cut(s) 422
PteI GCGCGC 2 cut(s) 466, 468
RruI TCGCGA 1 cut(s) 304
RsaI GTAC 2 cut(s) 162, 335
RsaNI GTAC 2 cut(s) 161, 334
RseI CAYNNNNRTG 1 cut(s) 457
SacI GAGCTC 1 cut(s) 63
SatI GCNGC 6 cut(s) 145, 175, 180, 227, 243, 445
Sau3AI GATC 5 cut(s) 126, 199, 234, 258, 360
Sau96I GGNCC 4 cut(s) 4, 90, 272, 367
SchI GAGTC 4 cut(s) 49, 109, 143, 288
ScrFI CCNGG 2 cut(s) 22, 170
SduI GDGCHC 2 cut(s) 63, 294
SetI ASST 9 cut(s) 15, 63, 228, 339, 357, 423, 442, 490, 504
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 3 cut(s) 4, 90, 367
SmiMI CAYNNNNRTG 1 cut(s) 457
Sse9I AATT 1 cut(s) 139
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 20, 168
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 3 cut(s) 339, 423, 504
TaqI TCGA 2 cut(s) 15, 237
TaqII GACCGA 1 cut(s) 228
TasI AATT 1 cut(s) 139
TauI GCSGC 5 cut(s) 147, 177, 182, 245, 447
TfiI GAWTC 1 cut(s) 394
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 3 cut(s) 112, 355, 497
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 3 cut(s) 112, 355, 497
TspRI CASTG 1 cut(s) 80
Tth111I GACNNNGTC 1 cut(s) 422
VpaK11BI GGWCC 3 cut(s) 4, 90, 367
XceI RCATGY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 1 cut(s) 276
ZraI GACGTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.