DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16980 AT4G16265 AT4G16265 |
| fragaria_vesca | FvH4_4g19480 |
| malus_domestica | MD13G1156200.v1.1 MD16G1157100.v1.1 |
| prunus_persica | Prupe.1G122000_v2.0.a1 |
| pyrus_communis | pycom13g13360 pycom16g13210 |
| rosa_chinensis | RchiOBHm_Chr4g0424591 |
| rosa_laevigata | RLG00000007453 |
| rosa_multiflora | Rmu_sc0002603.1_g000022 Rmu_sc0003942.1_g000007 |
| rosa_roxburghii | Rroxscaffold_5G00366510 |
| rosa_rugosa | Rorug04G0198000 Rorug04G0198000 |
| rosa_samantha | Rh4AG254800 Rh4BG260300 |
| rosa_wichuraiana | Rw4G022030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 24 |
| AciI | CCGC | 1 cut(s) | 22 |
| AclWI | GGATC | 1 cut(s) | 64 |
| AcsI | RAATTY | 1 cut(s) | 14 |
| AfaI | GTAC | 2 cut(s) | 7, 131 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 214, 268, 323 |
| AjiI | CACGTC | 1 cut(s) | 184 |
| AjnI | CCWGG | 2 cut(s) | 102, 261 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 54, 86 |
| AluBI | AGCT | 2 cut(s) | 113, 123 |
| AluI | AGCT | 2 cut(s) | 113, 123 |
| AlwI | GGATC | 1 cut(s) | 64 |
| AoxI | GGCC | 1 cut(s) | 249 |
| ApoI | RAATTY | 1 cut(s) | 14 |
| AsuHPI | GGTGA | 2 cut(s) | 92, 290 |
| AxyI | CCTNAGG | 1 cut(s) | 48 |
| BceAI | ACGGC | 3 cut(s) | 72, 236, 285 |
| BciT130I | CCWGG | 2 cut(s) | 104, 263 |
| BciVI | GTATCC | 1 cut(s) | 54 |
| BclI | TGATCA | 1 cut(s) | 97 |
| BfaI | CTAG | 1 cut(s) | 273 |
| BfuI | GTATCC | 1 cut(s) | 54 |
| BglII | AGATCT | 1 cut(s) | 171 |
| BisI | GCNGC | 1 cut(s) | 22 |
| BlsI | GCNGC | 1 cut(s) | 23 |
| BmcAI | AGTACT | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 2 cut(s) | 104, 263 |
| BmgBI | CACGTC | 1 cut(s) | 184 |
| BmrFI | CCNGG | 2 cut(s) | 104, 263 |
| BsaJI | CCNNGG | 1 cut(s) | 213 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 214, 268, 323 |
| Bse21I | CCTNAGG | 1 cut(s) | 48 |
| BseBI | CCWGG | 2 cut(s) | 104, 263 |
| BseDI | CCNNGG | 1 cut(s) | 213 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 214, 268, 323 |
| BseMII | CTCAG | 1 cut(s) | 182 |
| BseRI | GAGGAG | 1 cut(s) | 65 |
| Bsh1236I | CGCG | 1 cut(s) | 24 |
| BshFI | GGCC | 1 cut(s) | 251 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 214, 268, 323 |
| BsnI | GGCC | 1 cut(s) | 251 |
| Bsp1407I | TGTACA | 1 cut(s) | 129 |
| Bsp143I | GATC | 3 cut(s) | 69, 97, 171 |
| BspACI | CCGC | 1 cut(s) | 22 |
| BspANI | GGCC | 1 cut(s) | 251 |
| BspCNI | CTCAG | 1 cut(s) | 181 |
| BspFNI | CGCG | 1 cut(s) | 24 |
| BspPI | GGATC | 1 cut(s) | 64 |
| BsrGI | TGTACA | 1 cut(s) | 129 |
| BssECI | CCNNGG | 1 cut(s) | 213 |
| BssMI | GATC | 3 cut(s) | 69, 97, 171 |
| BssT1I | CCWWGG | 1 cut(s) | 213 |
| Bst2UI | CCWGG | 2 cut(s) | 104, 263 |
| Bst4CI | ACNGT | 1 cut(s) | 297 |
| Bst6I | CTCTTC | 1 cut(s) | 207 |
| BstAUI | TGTACA | 1 cut(s) | 129 |
| BstC8I | GCNNGC | 1 cut(s) | 85 |
| BstDEI | CTNAG | 3 cut(s) | 48, 168, 231 |
| BstFNI | CGCG | 1 cut(s) | 24 |
| BstKTI | GATC | 3 cut(s) | 72, 100, 174 |
| BstMBI | GATC | 3 cut(s) | 69, 97, 171 |
| BstNI | CCWGG | 2 cut(s) | 104, 263 |
| BstSCI | CCNGG | 2 cut(s) | 102, 261 |
| BstUI | CGCG | 1 cut(s) | 24 |
| BstX2I | RGATCY | 2 cut(s) | 69, 171 |
| BstYI | RGATCY | 2 cut(s) | 69, 171 |
| Bsu36I | CCTNAGG | 1 cut(s) | 48 |
| BsuI | GTATCC | 1 cut(s) | 54 |
| BsuRI | GGCC | 1 cut(s) | 251 |
| BtgZI | GCGATG | 1 cut(s) | 314 |
| BtrI | CACGTC | 1 cut(s) | 184 |
| BtsIMutI | CAGTG | 1 cut(s) | 293 |
| Cac8I | GCNNGC | 1 cut(s) | 85 |
| Csp6I | GTAC | 2 cut(s) | 6, 130 |
| CviJI | RGCY | 7 cut(s) | 113, 123, 188, 218, 251, 266, 272 |
| CviKI_1 | RGCY | 7 cut(s) | 113, 123, 188, 218, 251, 266, 272 |
| CviQI | GTAC | 2 cut(s) | 6, 130 |
| DdeI | CTNAG | 3 cut(s) | 48, 168, 231 |
| DpnI | GATC | 3 cut(s) | 71, 99, 173 |
| DpnII | GATC | 3 cut(s) | 69, 97, 171 |
| Eam1104I | CTCTTC | 1 cut(s) | 207 |
| EarI | CTCTTC | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 1 cut(s) | 213 |
| Eco81I | CCTNAGG | 1 cut(s) | 48 |
| EcoRII | CCWGG | 2 cut(s) | 102, 261 |
| EcoT14I | CCWWGG | 1 cut(s) | 213 |
| ErhI | CCWWGG | 1 cut(s) | 213 |
| FaiI | YATR | 3 cut(s) | 11, 81, 243 |
| FbaI | TGATCA | 1 cut(s) | 97 |
| Fnu4HI | GCNGC | 1 cut(s) | 22 |
| Fsp4HI | GCNGC | 1 cut(s) | 22 |
| FspBI | CTAG | 1 cut(s) | 273 |
| GluI | GCNGC | 1 cut(s) | 22 |
| HaeIII | GGCC | 1 cut(s) | 251 |
| HphI | GGTGA | 2 cut(s) | 92, 290 |
| Hpy166II | GTNNAC | 1 cut(s) | 130 |
| Hpy188I | TCNGA | 2 cut(s) | 171, 193 |
| Hpy8I | GTNNAC | 1 cut(s) | 130 |
| HpyAV | CCTTC | 1 cut(s) | 278 |
| HpyCH4III | ACNGT | 1 cut(s) | 297 |
| HpyCH4IV | ACGT | 1 cut(s) | 183 |
| HpyCH4V | TGCA | 1 cut(s) | 312 |
| HpyF3I | CTNAG | 3 cut(s) | 48, 168, 231 |
| HpySE526I | ACGT | 1 cut(s) | 183 |
| Ksp22I | TGATCA | 1 cut(s) | 97 |
| Kzo9I | GATC | 3 cut(s) | 69, 97, 171 |
| LpnPI | CCDG | 5 cut(s) | 89, 116, 248, 275, 319 |
| MaeI | CTAG | 1 cut(s) | 273 |
| MaeII | ACGT | 1 cut(s) | 183 |
| MalI | GATC | 3 cut(s) | 71, 99, 173 |
| MboI | GATC | 3 cut(s) | 69, 97, 171 |
| MboII | GAAGA | 4 cut(s) | 79, 194, 250, 293 |
| MflI | RGATCY | 2 cut(s) | 69, 171 |
| MluCI | AATT | 3 cut(s) | 14, 91, 319 |
| MnlI | CCTC | 7 cut(s) | 46, 83, 86, 100, 133, 241, 269 |
| MseI | TTAA | 1 cut(s) | 176 |
| MspA1I | CMGCKG | 1 cut(s) | 123 |
| MspR9I | CCNGG | 2 cut(s) | 104, 263 |
| MvaI | CCWGG | 2 cut(s) | 104, 263 |
| MvnI | CGCG | 1 cut(s) | 24 |
| NdeII | GATC | 3 cut(s) | 69, 97, 171 |
| PkrI | GCNGC | 1 cut(s) | 23 |
| Psp6I | CCWGG | 2 cut(s) | 102, 261 |
| PspGI | CCWGG | 2 cut(s) | 102, 261 |
| PsuI | RGATCY | 2 cut(s) | 69, 171 |
| PvuII | CAGCTG | 1 cut(s) | 123 |
| RsaI | GTAC | 2 cut(s) | 7, 131 |
| RsaNI | GTAC | 2 cut(s) | 6, 130 |
| SaqAI | TTAA | 1 cut(s) | 176 |
| SatI | GCNGC | 1 cut(s) | 22 |
| Sau3AI | GATC | 3 cut(s) | 69, 97, 171 |
| ScaI | AGTACT | 1 cut(s) | 7 |
| ScrFI | CCNGG | 2 cut(s) | 104, 263 |
| SetI | ASST | 6 cut(s) | 111, 115, 125, 144, 186, 280 |
| Sse9I | AATT | 3 cut(s) | 14, 91, 319 |
| SsiI | CCGC | 1 cut(s) | 22 |
| SspMI | CTAG | 1 cut(s) | 273 |
| StyD4I | CCNGG | 2 cut(s) | 102, 261 |
| StyI | CCWWGG | 1 cut(s) | 213 |
| TaaI | ACNGT | 1 cut(s) | 297 |
| TaiI | ACGT | 1 cut(s) | 186 |
| TasI | AATT | 3 cut(s) | 14, 91, 319 |
| TatI | WGTACW | 2 cut(s) | 5, 129 |
| TauI | GCSGC | 1 cut(s) | 24 |
| Tru1I | TTAA | 1 cut(s) | 176 |
| Tru9I | TTAA | 1 cut(s) | 176 |
| TscAI | CASTG | 1 cut(s) | 300 |
| TspDTI | ATGAA | 2 cut(s) | 26, 134 |
| TspRI | CASTG | 1 cut(s) | 300 |
| XapI | RAATTY | 1 cut(s) | 14 |
| XspI | CTAG | 1 cut(s) | 273 |
| ZrmI | AGTACT | 1 cut(s) | 7 |