DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16980 AT4G16265 AT4G16265 |
| fragaria_vesca | FvH4_4g19480 |
| malus_domestica | MD13G1156200.v1.1 MD16G1157100.v1.1 |
| prunus_persica | Prupe.1G122000_v2.0.a1 |
| pyrus_communis | pycom13g13360 pycom16g13210 |
| rosa_chinensis | RchiOBHm_Chr4g0424591 |
| rosa_laevigata | RLG00000007453 |
| rosa_multiflora | Rmu_sc0002603.1_g000022 Rmu_sc0003942.1_g000007 |
| rosa_roxburghii | Rroxscaffold_5G00366510 |
| rosa_rugosa | Rorug04G0198000 Rorug04G0198000 |
| rosa_samantha | Rh4AG254800 Rh4BG260300 |
| rosa_wichuraiana | Rw4G022030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 129 |
| AccII | CGCG | 2 cut(s) | 24, 83 |
| AciI | CCGC | 2 cut(s) | 22, 88 |
| AclWI | GGATC | 2 cut(s) | 64, 188 |
| AcoI | YGGCCR | 1 cut(s) | 325 |
| AcsI | RAATTY | 1 cut(s) | 14 |
| AfaI | GTAC | 2 cut(s) | 7, 44 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 52, 323 |
| AflIII | ACRYGT | 1 cut(s) | 81 |
| AjnI | CCWGG | 1 cut(s) | 102 |
| AluBI | AGCT | 3 cut(s) | 188, 251, 321 |
| AluI | AGCT | 3 cut(s) | 188, 251, 321 |
| Alw26I | GTCTC | 1 cut(s) | 333 |
| AlwI | GGATC | 2 cut(s) | 64, 188 |
| AoxI | GGCC | 1 cut(s) | 325 |
| ApeKI | GCWGC | 2 cut(s) | 188, 309 |
| ApoI | RAATTY | 1 cut(s) | 14 |
| AspLEI | GCGC | 1 cut(s) | 225 |
| AspS9I | GGNCC | 1 cut(s) | 61 |
| AsuHPI | GGTGA | 1 cut(s) | 92 |
| AvaII | GGWCC | 1 cut(s) | 61 |
| BalI | TGGCCA | 1 cut(s) | 327 |
| BbsI | GAAGAC | 1 cut(s) | 247 |
| BbvI | GCAGC | 2 cut(s) | 175, 296 |
| BciT130I | CCWGG | 1 cut(s) | 104 |
| BcoDI | GTCTC | 1 cut(s) | 333 |
| BfaI | CTAG | 1 cut(s) | 273 |
| BfmI | CTRYAG | 2 cut(s) | 130, 189 |
| BisI | GCNGC | 4 cut(s) | 22, 88, 189, 310 |
| BlsI | GCNGC | 4 cut(s) | 23, 89, 190, 311 |
| Bme1390I | CCNGG | 1 cut(s) | 104 |
| Bme18I | GGWCC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 1 cut(s) | 61 |
| BmrFI | CCNGG | 1 cut(s) | 104 |
| BpiI | GAAGAC | 1 cut(s) | 247 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 237, 267 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 52, 323 |
| BseBI | CCWGG | 1 cut(s) | 104 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 52, 323 |
| BseRI | GAGGAG | 2 cut(s) | 65, 291 |
| BseXI | GCAGC | 2 cut(s) | 175, 296 |
| BseYI | CCCAGC | 1 cut(s) | 317 |
| Bsh1236I | CGCG | 2 cut(s) | 24, 83 |
| BshFI | GGCC | 1 cut(s) | 327 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 52, 323 |
| BsmAI | GTCTC | 1 cut(s) | 333 |
| BsmI | GAATGC | 1 cut(s) | 32 |
| BsnI | GGCC | 1 cut(s) | 327 |
| Bsp143I | GATC | 3 cut(s) | 69, 97, 193 |
| BspACI | CCGC | 2 cut(s) | 22, 88 |
| BspANI | GGCC | 1 cut(s) | 327 |
| BspFNI | CGCG | 2 cut(s) | 24, 83 |
| BspMAI | CTGCAG | 1 cut(s) | 193 |
| BspPI | GGATC | 2 cut(s) | 64, 188 |
| BssMI | GATC | 3 cut(s) | 69, 97, 193 |
| Bst2UI | CCWGG | 1 cut(s) | 104 |
| Bst4CI | ACNGT | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 2 cut(s) | 85, 239 |
| BstFNI | CGCG | 2 cut(s) | 24, 83 |
| BstHHI | GCGC | 1 cut(s) | 225 |
| BstKTI | GATC | 3 cut(s) | 72, 100, 196 |
| BstMAI | GTCTC | 1 cut(s) | 333 |
| BstMBI | GATC | 3 cut(s) | 69, 97, 193 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 27, 93, 318 |
| BstNI | CCWGG | 1 cut(s) | 104 |
| BstSCI | CCNGG | 1 cut(s) | 102 |
| BstSFI | CTRYAG | 2 cut(s) | 130, 189 |
| BstUI | CGCG | 2 cut(s) | 24, 83 |
| BstV1I | GCAGC | 2 cut(s) | 175, 296 |
| BstV2I | GAAGAC | 1 cut(s) | 247 |
| BstX2I | RGATCY | 2 cut(s) | 69, 193 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 155 |
| BstYI | RGATCY | 2 cut(s) | 69, 193 |
| BsuRI | GGCC | 1 cut(s) | 327 |
| BtsI | GCAGTG | 1 cut(s) | 225 |
| BtsIMutI | CAGTG | 1 cut(s) | 225 |
| Cac8I | GCNNGC | 2 cut(s) | 85, 239 |
| CfoI | GCGC | 1 cut(s) | 225 |
| Cfr13I | GGNCC | 1 cut(s) | 61 |
| Csp6I | GTAC | 2 cut(s) | 6, 43 |
| CviAII | CATG | 3 cut(s) | 10, 149, 242 |
| CviJI | RGCY | 4 cut(s) | 188, 251, 321, 327 |
| CviKI_1 | RGCY | 4 cut(s) | 188, 251, 321, 327 |
| CviQI | GTAC | 2 cut(s) | 6, 43 |
| DpnI | GATC | 3 cut(s) | 71, 99, 195 |
| DpnII | GATC | 3 cut(s) | 69, 97, 193 |
| EaeI | YGGCCR | 1 cut(s) | 325 |
| Eco47I | GGWCC | 1 cut(s) | 61 |
| EcoRII | CCWGG | 1 cut(s) | 102 |
| FaeI | CATG | 3 cut(s) | 13, 152, 245 |
| FaiI | YATR | 5 cut(s) | 11, 150, 243, 290, 330 |
| FatI | CATG | 3 cut(s) | 9, 148, 241 |
| FblI | GTMKAC | 1 cut(s) | 129 |
| Fnu4HI | GCNGC | 4 cut(s) | 22, 88, 189, 310 |
| Fsp4HI | GCNGC | 4 cut(s) | 22, 88, 189, 310 |
| FspBI | CTAG | 1 cut(s) | 273 |
| GlaI | GCGC | 1 cut(s) | 224 |
| GluI | GCNGC | 4 cut(s) | 22, 88, 189, 310 |
| GsaI | CCCAGC | 1 cut(s) | 321 |
| HaeIII | GGCC | 1 cut(s) | 327 |
| HhaI | GCGC | 1 cut(s) | 225 |
| Hin1II | CATG | 3 cut(s) | 13, 152, 245 |
| Hin6I | GCGC | 1 cut(s) | 223 |
| HinP1I | GCGC | 1 cut(s) | 223 |
| HphI | GGTGA | 1 cut(s) | 92 |
| Hpy166II | GTNNAC | 1 cut(s) | 130 |
| Hpy188I | TCNGA | 1 cut(s) | 232 |
| Hpy8I | GTNNAC | 1 cut(s) | 130 |
| HpyAV | CCTTC | 1 cut(s) | 278 |
| HpyCH4III | ACNGT | 1 cut(s) | 125 |
| HpyCH4V | TGCA | 5 cut(s) | 30, 178, 191, 237, 312 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 27, 93, 318 |
| Hsp92II | CATG | 3 cut(s) | 13, 152, 245 |
| HspAI | GCGC | 1 cut(s) | 223 |
| Kzo9I | GATC | 3 cut(s) | 69, 97, 193 |
| LpnPI | CCDG | 6 cut(s) | 53, 77, 89, 116, 248, 331 |
| Lsp1109I | GCAGC | 2 cut(s) | 175, 296 |
| MaeI | CTAG | 1 cut(s) | 273 |
| MalI | GATC | 3 cut(s) | 71, 99, 195 |
| MboI | GATC | 3 cut(s) | 69, 97, 193 |
| MboII | GAAGA | 2 cut(s) | 79, 247 |
| MflI | RGATCY | 2 cut(s) | 69, 193 |
| MlsI | TGGCCA | 1 cut(s) | 327 |
| MluCI | AATT | 1 cut(s) | 14 |
| MluI | ACGCGT | 1 cut(s) | 81 |
| MluNI | TGGCCA | 1 cut(s) | 327 |
| MmeI | TCCRAC | 1 cut(s) | 221 |
| MnlI | CCTC | 7 cut(s) | 46, 83, 86, 100, 216, 269, 274 |
| Mox20I | TGGCCA | 1 cut(s) | 327 |
| MscI | TGGCCA | 1 cut(s) | 327 |
| Msp20I | TGGCCA | 1 cut(s) | 327 |
| MspA1I | CMGCKG | 1 cut(s) | 321 |
| MspR9I | CCNGG | 1 cut(s) | 104 |
| Mva1269I | GAATGC | 1 cut(s) | 32 |
| MvaI | CCWGG | 1 cut(s) | 104 |
| MvnI | CGCG | 2 cut(s) | 24, 83 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 27, 93, 318 |
| NdeII | GATC | 3 cut(s) | 69, 97, 193 |
| NlaIII | CATG | 3 cut(s) | 13, 152, 245 |
| PctI | GAATGC | 1 cut(s) | 32 |
| PkrI | GCNGC | 4 cut(s) | 23, 89, 190, 311 |
| Psp6I | CCWGG | 1 cut(s) | 102 |
| PspFI | CCCAGC | 1 cut(s) | 317 |
| PspGI | CCWGG | 1 cut(s) | 102 |
| PspPI | GGNCC | 1 cut(s) | 61 |
| PstI | CTGCAG | 1 cut(s) | 193 |
| PsuI | RGATCY | 2 cut(s) | 69, 193 |
| PvuII | CAGCTG | 1 cut(s) | 321 |
| RsaI | GTAC | 2 cut(s) | 7, 44 |
| RsaNI | GTAC | 2 cut(s) | 6, 43 |
| SatI | GCNGC | 4 cut(s) | 22, 88, 189, 310 |
| Sau3AI | GATC | 3 cut(s) | 69, 97, 193 |
| Sau96I | GGNCC | 1 cut(s) | 61 |
| ScrFI | CCNGG | 1 cut(s) | 104 |
| SetI | ASST | 6 cut(s) | 111, 190, 253, 289, 323, 335 |
| SfcI | CTRYAG | 2 cut(s) | 130, 189 |
| SinI | GGWCC | 1 cut(s) | 61 |
| Sse9I | AATT | 1 cut(s) | 14 |
| SsiI | CCGC | 2 cut(s) | 22, 88 |
| SspI | AATATT | 1 cut(s) | 174 |
| SspMI | CTAG | 1 cut(s) | 273 |
| StyD4I | CCNGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 1 cut(s) | 125 |
| TaqI | TCGA | 1 cut(s) | 208 |
| TasI | AATT | 1 cut(s) | 14 |
| TauI | GCSGC | 2 cut(s) | 24, 90 |
| TscAI | CASTG | 1 cut(s) | 225 |
| TseI | GCWGC | 2 cut(s) | 188, 309 |
| TspDTI | ATGAA | 1 cut(s) | 26 |
| TspRI | CASTG | 1 cut(s) | 225 |
| VpaK11BI | GGWCC | 1 cut(s) | 61 |
| XapI | RAATTY | 1 cut(s) | 14 |
| XmiI | GTMKAC | 1 cut(s) | 129 |
| XspI | CTAG | 1 cut(s) | 273 |