Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012090

Physical Location & Seq

Genomic Coordinates Reverse (-)

9202250 .. 9204147

Gene Structure 1898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16265.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAGTACTATGAAATTTTGTCGCGAATGTAATAACATTCTATATCCCAAGGAAGACAAGGAGCAATCAATCCTCCTCTATGCGTGCCGTAATTGTGATCACCAGGAAGCAGCAGATAACAATTGTGTTTACAGAAACGAGGTTCATCACTCTGTAAGTGAACAAACTCAGATCCTATCTGACGTTGCTTCCGACCCAACTCTTCCACGTACCAAGGCTGTGCGATGCGCCAAGTGTCAACACGGTGAAGCTGTCTTCTTCCAGGCCACGGCTAGAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTGCAACCCGAACTGTAGTCACCGTTGGAGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0001192 GO:0001193 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006304 GO:0006305 GO:0006306 GO:0006351 GO:0006352 GO:0006354 GO:0006366 GO:0006367 GO:0006368 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016591 GO:0018130 GO:0019222 GO:0019438 GO:0030880 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_POL_M_15KD TFIIS_C

Protein Analysis

114

Amino Acids

13.11

Weight (kDa)

6.19

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPB9	PF02150	4 - 39	1.9e-12	RNA polymerases M/15 Kd subunit
Zn_ribbon_TFIIS	PF01096	75 - 113	3.5e-10	Transcription factor S-II (TFIIS)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16980 AT4G16265 AT4G16265
fragaria_vesca	FvH4_4g19480
malus_domestica	MD13G1156200.v1.1 MD16G1157100.v1.1
prunus_persica	Prupe.1G122000_v2.0.a1
pyrus_communis	pycom13g13360 pycom16g13210
rosa_chinensis	RchiOBHm_Chr4g0424591
rosa_laevigata	RLG00000007453
rosa_multiflora	Rmu_sc0002603.1_g000022 Rmu_sc0003942.1_g000007
rosa_roxburghii	Rroxscaffold_5G00366510
rosa_rugosa	Rorug04G0198000 Rorug04G0198000
rosa_samantha	Rh4AG254800 Rh4BG260300
rosa_wichuraiana	Rw4G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	24
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	2 cut(s)	7, 211
AfiI	CCNNNNNNNGG	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	102, 261
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	110, 309
ApoI	RAATTY	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	92, 257, 320
BbsI	GAAGAC	2 cut(s)	60, 247
BbvI	GCAGC	2 cut(s)	122, 296
BceAI	ACGGC	2 cut(s)	72, 285
BciT130I	CCWGG	2 cut(s)	104, 263
BclI	TGATCA	1 cut(s)	97
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	322
BisI	GCNGC	2 cut(s)	111, 310
BlsI	GCNGC	2 cut(s)	112, 311
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	104, 263
BmrFI	CCNGG	2 cut(s)	104, 263
BmsI	GCATC	1 cut(s)	215
BpiI	GAAGAC	2 cut(s)	60, 247
BsaAI	YACGTR	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	48, 213, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	104, 263
BseDI	CCNNGG	3 cut(s)	48, 213, 267
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	122, 296
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	268
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	97, 171
Bsp68I	TCGCGA	1 cut(s)	24
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	24
BspPI	GGATC	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	48, 213, 267
BssMI	GATC	2 cut(s)	97, 171
BssT1I	CCWWGG	2 cut(s)	48, 213
Bst2UI	CCWGG	2 cut(s)	104, 263
Bst4CI	ACNGT	3 cut(s)	245, 323, 332
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	2 cut(s)	100, 174
BstMBI	GATC	2 cut(s)	97, 171
BstNI	CCWGG	2 cut(s)	104, 263
BstSCI	CCNGG	2 cut(s)	102, 261
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	122, 296
BstV2I	GAAGAC	2 cut(s)	60, 247
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	238
BtuMI	TCGCGA	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	6, 210
CviJI	RGCY	4 cut(s)	218, 251, 266, 272
CviKI_1	RGCY	4 cut(s)	218, 251, 266, 272
CviQI	GTAC	2 cut(s)	6, 210
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	99, 173
DpnII	GATC	2 cut(s)	97, 171
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	48, 213
EcoRII	CCWGG	2 cut(s)	102, 261
EcoT14I	CCWWGG	2 cut(s)	48, 213
ErhI	CCWWGG	2 cut(s)	48, 213
FaiI	YATR	3 cut(s)	11, 43, 81
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	111, 310
Fsp4HI	GCNGC	2 cut(s)	111, 310
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	2 cut(s)	111, 310
HaeIII	GGCC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HinfI	GANTC	1 cut(s)	292
HphI	GGTGA	3 cut(s)	92, 257, 320
Hpy166II	GTNNAC	3 cut(s)	130, 161, 239
Hpy188I	TCNGA	3 cut(s)	171, 181, 193
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	3 cut(s)	130, 161, 239
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	3 cut(s)	245, 323, 332
HpyCH4IV	ACGT	2 cut(s)	183, 208
HpyCH4V	TGCA	1 cut(s)	312
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	2 cut(s)	183, 208
HspAI	GCGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	97, 171
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	89, 116, 248, 275
Lsp1109I	GCAGC	2 cut(s)	122, 296
LweI	GCATC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	2 cut(s)	183, 208
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	99, 173
MboI	GATC	2 cut(s)	97, 171
MboII	GAAGA	5 cut(s)	65, 194, 247, 250, 293
MfeI	CAATTG	1 cut(s)	121
MflI	RGATCY	1 cut(s)	171
MluCI	AATT	3 cut(s)	14, 91, 121
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	216, 314
MnlI	CCTC	4 cut(s)	83, 86, 133, 269
MspR9I	CCNGG	2 cut(s)	104, 263
MunI	CAATTG	1 cut(s)	121
MvaI	CCWGG	2 cut(s)	104, 263
MvnI	CGCG	1 cut(s)	24
NdeII	GATC	2 cut(s)	97, 171
NmuCI	GTSAC	1 cut(s)	326
NruI	TCGCGA	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	112, 311
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Ppu21I	YACGTR	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	102, 261
PspGI	CCWGG	2 cut(s)	102, 261
PsuI	RGATCY	1 cut(s)	171
RruI	TCGCGA	1 cut(s)	24
RsaI	GTAC	2 cut(s)	7, 211
RsaNI	GTAC	2 cut(s)	6, 210
SatI	GCNGC	2 cut(s)	111, 310
Sau3AI	GATC	2 cut(s)	97, 171
ScaI	AGTACT	1 cut(s)	7
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	2 cut(s)	104, 263
SetI	ASST	4 cut(s)	144, 186, 211, 253
SfaNI	GCATC	1 cut(s)	215
SfcI	CTRYAG	1 cut(s)	322
Sse9I	AATT	3 cut(s)	14, 91, 121
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	102, 261
StyI	CCWWGG	2 cut(s)	48, 213
TaaI	ACNGT	3 cut(s)	245, 323, 332
TaiI	ACGT	2 cut(s)	186, 211
TasI	AATT	3 cut(s)	14, 91, 121
TatI	WGTACW	1 cut(s)	5
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	110, 309
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	26, 134
XapI	RAATTY	1 cut(s)	14
XspI	CTAG	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.