DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16980 AT4G16265 AT4G16265 |
| fragaria_vesca | FvH4_4g19480 |
| malus_domestica | MD13G1156200.v1.1 MD16G1157100.v1.1 |
| prunus_persica | Prupe.1G122000_v2.0.a1 |
| pyrus_communis | pycom13g13360 pycom16g13210 |
| rosa_chinensis | RchiOBHm_Chr4g0424591 |
| rosa_laevigata | RLG00000007453 |
| rosa_multiflora | Rmu_sc0002603.1_g000022 Rmu_sc0003942.1_g000007 |
| rosa_roxburghii | Rroxscaffold_5G00366510 |
| rosa_rugosa | Rorug04G0198000 Rorug04G0198000 |
| rosa_samantha | Rh4AG254800 Rh4BG260300 |
| rosa_wichuraiana | Rw4G022030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 135 |
| AccII | CGCG | 2 cut(s) | 24, 89 |
| AciI | CCGC | 2 cut(s) | 22, 94 |
| AclWI | GGATC | 1 cut(s) | 194 |
| AfaI | GTAC | 1 cut(s) | 7 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 58, 329 |
| AflIII | ACRYGT | 1 cut(s) | 87 |
| AjnI | CCWGG | 1 cut(s) | 108 |
| AluBI | AGCT | 3 cut(s) | 194, 224, 257 |
| AluI | AGCT | 3 cut(s) | 194, 224, 257 |
| Alw21I | GWGCWC | 1 cut(s) | 238 |
| AlwI | GGATC | 1 cut(s) | 194 |
| ApeKI | GCWGC | 2 cut(s) | 194, 315 |
| AspLEI | GCGC | 1 cut(s) | 231 |
| AsuHPI | GGTGA | 1 cut(s) | 98 |
| BbsI | GAAGAC | 1 cut(s) | 253 |
| Bbv12I | GWGCWC | 1 cut(s) | 238 |
| BbvI | GCAGC | 2 cut(s) | 181, 302 |
| BciT130I | CCWGG | 1 cut(s) | 110 |
| BclI | TGATCA | 1 cut(s) | 103 |
| BfaI | CTAG | 1 cut(s) | 279 |
| BfmI | CTRYAG | 3 cut(s) | 136, 195, 334 |
| BisI | GCNGC | 4 cut(s) | 22, 94, 195, 316 |
| BlsI | GCNGC | 4 cut(s) | 23, 95, 196, 317 |
| Bme1390I | CCNGG | 1 cut(s) | 110 |
| BmrFI | CCNGG | 1 cut(s) | 110 |
| BpiI | GAAGAC | 1 cut(s) | 253 |
| BsaJI | CCNNGG | 1 cut(s) | 54 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 243, 273 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 58, 329 |
| BseBI | CCWGG | 1 cut(s) | 110 |
| BseDI | CCNNGG | 1 cut(s) | 54 |
| BseGI | GGATG | 1 cut(s) | 300 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 58, 329 |
| BseMII | CTCAG | 1 cut(s) | 251 |
| BseRI | GAGGAG | 2 cut(s) | 297, 302 |
| BseXI | GCAGC | 2 cut(s) | 181, 302 |
| Bsh1236I | CGCG | 2 cut(s) | 24, 89 |
| BsiHKAI | GWGCWC | 1 cut(s) | 238 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 58, 329 |
| Bsp1286I | GDGCHC | 1 cut(s) | 238 |
| Bsp143I | GATC | 2 cut(s) | 103, 199 |
| BspACI | CCGC | 2 cut(s) | 22, 94 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BspFNI | CGCG | 2 cut(s) | 24, 89 |
| BspMAI | CTGCAG | 1 cut(s) | 199 |
| BspPI | GGATC | 1 cut(s) | 194 |
| BssECI | CCNNGG | 1 cut(s) | 54 |
| BssMI | GATC | 2 cut(s) | 103, 199 |
| BssT1I | CCWWGG | 1 cut(s) | 54 |
| Bst2UI | CCWGG | 1 cut(s) | 110 |
| Bst4CI | ACNGT | 2 cut(s) | 131, 329 |
| BstC8I | GCNNGC | 2 cut(s) | 91, 245 |
| BstDEI | CTNAG | 1 cut(s) | 237 |
| BstF5I | GGATG | 1 cut(s) | 300 |
| BstFNI | CGCG | 2 cut(s) | 24, 89 |
| BstHHI | GCGC | 1 cut(s) | 231 |
| BstKTI | GATC | 2 cut(s) | 106, 202 |
| BstMBI | GATC | 2 cut(s) | 103, 199 |
| BstNI | CCWGG | 1 cut(s) | 110 |
| BstSCI | CCNGG | 1 cut(s) | 108 |
| BstSFI | CTRYAG | 3 cut(s) | 136, 195, 334 |
| BstUI | CGCG | 2 cut(s) | 24, 89 |
| BstV1I | GCAGC | 2 cut(s) | 181, 302 |
| BstV2I | GAAGAC | 1 cut(s) | 253 |
| BstX2I | RGATCY | 1 cut(s) | 199 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 161 |
| BstYI | RGATCY | 1 cut(s) | 199 |
| BtsCI | GGATG | 1 cut(s) | 300 |
| BtsIMutI | CAGTG | 1 cut(s) | 245 |
| Cac8I | GCNNGC | 2 cut(s) | 91, 245 |
| CfoI | GCGC | 1 cut(s) | 231 |
| Csp6I | GTAC | 1 cut(s) | 6 |
| CviAII | CATG | 2 cut(s) | 10, 248 |
| CviJI | RGCY | 4 cut(s) | 194, 224, 257, 333 |
| CviKI_1 | RGCY | 4 cut(s) | 194, 224, 257, 333 |
| CviQI | GTAC | 1 cut(s) | 6 |
| DdeI | CTNAG | 1 cut(s) | 237 |
| DpnI | GATC | 2 cut(s) | 105, 201 |
| DpnII | GATC | 2 cut(s) | 103, 199 |
| Eco130I | CCWWGG | 1 cut(s) | 54 |
| EcoRII | CCWGG | 1 cut(s) | 108 |
| EcoT14I | CCWWGG | 1 cut(s) | 54 |
| ErhI | CCWWGG | 1 cut(s) | 54 |
| FaeI | CATG | 2 cut(s) | 13, 251 |
| FaiI | YATR | 2 cut(s) | 11, 249 |
| FatI | CATG | 2 cut(s) | 9, 247 |
| FbaI | TGATCA | 1 cut(s) | 103 |
| FblI | GTMKAC | 1 cut(s) | 135 |
| Fnu4HI | GCNGC | 4 cut(s) | 22, 94, 195, 316 |
| FokI | GGATG | 1 cut(s) | 307 |
| Fsp4HI | GCNGC | 4 cut(s) | 22, 94, 195, 316 |
| FspBI | CTAG | 1 cut(s) | 279 |
| GlaI | GCGC | 1 cut(s) | 230 |
| GluI | GCNGC | 4 cut(s) | 22, 94, 195, 316 |
| HhaI | GCGC | 1 cut(s) | 231 |
| Hin1II | CATG | 2 cut(s) | 13, 251 |
| Hin6I | GCGC | 1 cut(s) | 229 |
| HinP1I | GCGC | 1 cut(s) | 229 |
| HinfI | GANTC | 1 cut(s) | 76 |
| HphI | GGTGA | 1 cut(s) | 98 |
| Hpy166II | GTNNAC | 1 cut(s) | 136 |
| Hpy188I | TCNGA | 1 cut(s) | 34 |
| Hpy8I | GTNNAC | 1 cut(s) | 136 |
| HpyCH4III | ACNGT | 2 cut(s) | 131, 329 |
| HpyCH4V | TGCA | 4 cut(s) | 184, 197, 243, 318 |
| HpyF3I | CTNAG | 1 cut(s) | 237 |
| Hsp92II | CATG | 2 cut(s) | 13, 251 |
| HspAI | GCGC | 1 cut(s) | 229 |
| Ksp22I | TGATCA | 1 cut(s) | 103 |
| Kzo9I | GATC | 2 cut(s) | 103, 199 |
| LpnPI | CCDG | 4 cut(s) | 95, 122, 254, 322 |
| Lsp1109I | GCAGC | 2 cut(s) | 181, 302 |
| MaeI | CTAG | 1 cut(s) | 279 |
| MalI | GATC | 2 cut(s) | 105, 201 |
| MboI | GATC | 2 cut(s) | 103, 199 |
| MboII | GAAGA | 3 cut(s) | 71, 85, 253 |
| MfeI | CAATTG | 1 cut(s) | 97 |
| MflI | RGATCY | 1 cut(s) | 199 |
| MhlI | GDGCHC | 1 cut(s) | 238 |
| MluCI | AATT | 1 cut(s) | 97 |
| MluI | ACGCGT | 1 cut(s) | 87 |
| MmeI | TCCRAC | 1 cut(s) | 227 |
| MnlI | CCTC | 7 cut(s) | 52, 106, 222, 275, 280, 283, 336 |
| MspR9I | CCNGG | 1 cut(s) | 110 |
| MunI | CAATTG | 1 cut(s) | 97 |
| MvaI | CCWGG | 1 cut(s) | 110 |
| MvnI | CGCG | 2 cut(s) | 24, 89 |
| NdeII | GATC | 2 cut(s) | 103, 199 |
| NlaIII | CATG | 2 cut(s) | 13, 251 |
| PfeI | GAWTC | 1 cut(s) | 76 |
| PkrI | GCNGC | 4 cut(s) | 23, 95, 196, 317 |
| Psp6I | CCWGG | 1 cut(s) | 108 |
| PspGI | CCWGG | 1 cut(s) | 108 |
| PstI | CTGCAG | 1 cut(s) | 199 |
| PsuI | RGATCY | 1 cut(s) | 199 |
| RsaI | GTAC | 1 cut(s) | 7 |
| RsaNI | GTAC | 1 cut(s) | 6 |
| SatI | GCNGC | 4 cut(s) | 22, 94, 195, 316 |
| Sau3AI | GATC | 2 cut(s) | 103, 199 |
| ScrFI | CCNGG | 1 cut(s) | 110 |
| SduI | GDGCHC | 1 cut(s) | 238 |
| SetI | ASST | 6 cut(s) | 117, 196, 214, 226, 259, 341 |
| SfcI | CTRYAG | 3 cut(s) | 136, 195, 334 |
| Sse9I | AATT | 1 cut(s) | 97 |
| SsiI | CCGC | 2 cut(s) | 22, 94 |
| SspMI | CTAG | 1 cut(s) | 279 |
| StyD4I | CCNGG | 1 cut(s) | 108 |
| StyI | CCWWGG | 1 cut(s) | 54 |
| TaaI | ACNGT | 2 cut(s) | 131, 329 |
| TasI | AATT | 1 cut(s) | 97 |
| TauI | GCSGC | 2 cut(s) | 24, 96 |
| TfiI | GAWTC | 1 cut(s) | 76 |
| TscAI | CASTG | 1 cut(s) | 245 |
| TseI | GCWGC | 2 cut(s) | 194, 315 |
| TspDTI | ATGAA | 1 cut(s) | 26 |
| TspRI | CASTG | 1 cut(s) | 245 |
| XmiI | GTMKAC | 1 cut(s) | 135 |
| XspI | CTAG | 1 cut(s) | 279 |