DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16980 AT4G16265 AT4G16265 |
| fragaria_vesca | FvH4_4g19480 |
| malus_domestica | MD13G1156200.v1.1 MD16G1157100.v1.1 |
| prunus_persica | Prupe.1G122000_v2.0.a1 |
| pyrus_communis | pycom13g13360 pycom16g13210 |
| rosa_chinensis | RchiOBHm_Chr4g0424591 |
| rosa_laevigata | RLG00000007453 |
| rosa_multiflora | Rmu_sc0002603.1_g000022 Rmu_sc0003942.1_g000007 |
| rosa_roxburghii | Rroxscaffold_5G00366510 |
| rosa_rugosa | Rorug04G0198000 Rorug04G0198000 |
| rosa_samantha | Rh4AG254800 Rh4BG260300 |
| rosa_wichuraiana | Rw4G022030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 150 |
| AccII | CGCG | 1 cut(s) | 24 |
| AciI | CCGC | 3 cut(s) | 22, 109, 345 |
| AclWI | GGATC | 1 cut(s) | 209 |
| AcoI | YGGCCR | 1 cut(s) | 346 |
| AcsI | RAATTY | 1 cut(s) | 14 |
| AfaI | GTAC | 2 cut(s) | 7, 65 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 73, 344 |
| AluBI | AGCT | 3 cut(s) | 209, 272, 342 |
| AluI | AGCT | 3 cut(s) | 209, 272, 342 |
| Alw26I | GTCTC | 1 cut(s) | 354 |
| AlwI | GGATC | 1 cut(s) | 209 |
| AoxI | GGCC | 1 cut(s) | 346 |
| ApeKI | GCWGC | 3 cut(s) | 209, 330, 342 |
| ApoI | RAATTY | 1 cut(s) | 14 |
| AspLEI | GCGC | 1 cut(s) | 186 |
| BbvI | GCAGC | 3 cut(s) | 196, 317, 329 |
| BceAI | ACGGC | 1 cut(s) | 224 |
| BcoDI | GTCTC | 1 cut(s) | 354 |
| BfaI | CTAG | 1 cut(s) | 294 |
| BfmI | CTRYAG | 2 cut(s) | 151, 210 |
| BisI | GCNGC | 6 cut(s) | 22, 109, 210, 331, 343, 346 |
| BlsI | GCNGC | 6 cut(s) | 23, 110, 211, 332, 344, 347 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 258, 288 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 73, 344 |
| BseGI | GGATG | 1 cut(s) | 208 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 73, 344 |
| BseMII | CTCAG | 2 cut(s) | 126, 203 |
| BseRI | GAGGAG | 3 cut(s) | 86, 312, 317 |
| BseXI | GCAGC | 3 cut(s) | 196, 317, 329 |
| BseYI | CCCAGC | 1 cut(s) | 338 |
| Bsh1236I | CGCG | 1 cut(s) | 24 |
| BshFI | GGCC | 1 cut(s) | 348 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 73, 344 |
| BsmAI | GTCTC | 1 cut(s) | 354 |
| BsnI | GGCC | 1 cut(s) | 348 |
| Bsp143I | GATC | 2 cut(s) | 118, 214 |
| BspACI | CCGC | 3 cut(s) | 22, 109, 345 |
| BspANI | GGCC | 1 cut(s) | 348 |
| BspCNI | CTCAG | 2 cut(s) | 127, 202 |
| BspFNI | CGCG | 1 cut(s) | 24 |
| BspMAI | CTGCAG | 1 cut(s) | 214 |
| BspPI | GGATC | 1 cut(s) | 209 |
| BssMI | GATC | 2 cut(s) | 118, 214 |
| Bst6I | CTCTTC | 1 cut(s) | 228 |
| BstC8I | GCNNGC | 3 cut(s) | 106, 182, 260 |
| BstDEI | CTNAG | 3 cut(s) | 135, 189, 252 |
| BstF5I | GGATG | 1 cut(s) | 208 |
| BstFNI | CGCG | 1 cut(s) | 24 |
| BstHHI | GCGC | 1 cut(s) | 186 |
| BstKTI | GATC | 2 cut(s) | 121, 217 |
| BstMAI | GTCTC | 1 cut(s) | 354 |
| BstMBI | GATC | 2 cut(s) | 118, 214 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 114, 339 |
| BstSFI | CTRYAG | 2 cut(s) | 151, 210 |
| BstUI | CGCG | 1 cut(s) | 24 |
| BstV1I | GCAGC | 3 cut(s) | 196, 317, 329 |
| BstX2I | RGATCY | 1 cut(s) | 214 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 176 |
| BstYI | RGATCY | 1 cut(s) | 214 |
| BsuRI | GGCC | 1 cut(s) | 348 |
| BtsCI | GGATG | 1 cut(s) | 208 |
| Cac8I | GCNNGC | 3 cut(s) | 106, 182, 260 |
| CfoI | GCGC | 1 cut(s) | 186 |
| CseI | GACGC | 1 cut(s) | 136 |
| Csp6I | GTAC | 2 cut(s) | 6, 64 |
| CviAII | CATG | 2 cut(s) | 10, 263 |
| CviJI | RGCY | 5 cut(s) | 209, 239, 272, 342, 348 |
| CviKI_1 | RGCY | 5 cut(s) | 209, 239, 272, 342, 348 |
| CviQI | GTAC | 2 cut(s) | 6, 64 |
| DdeI | CTNAG | 3 cut(s) | 135, 189, 252 |
| DpnI | GATC | 2 cut(s) | 120, 216 |
| DpnII | GATC | 2 cut(s) | 118, 214 |
| EaeI | YGGCCR | 1 cut(s) | 346 |
| Eam1104I | CTCTTC | 1 cut(s) | 228 |
| EarI | CTCTTC | 1 cut(s) | 228 |
| FaeI | CATG | 2 cut(s) | 13, 266 |
| FaiI | YATR | 4 cut(s) | 11, 87, 264, 311 |
| FatI | CATG | 2 cut(s) | 9, 262 |
| FblI | GTMKAC | 1 cut(s) | 150 |
| Fnu4HI | GCNGC | 6 cut(s) | 22, 109, 210, 331, 343, 346 |
| FokI | GGATG | 1 cut(s) | 215 |
| Fsp4HI | GCNGC | 6 cut(s) | 22, 109, 210, 331, 343, 346 |
| FspBI | CTAG | 1 cut(s) | 294 |
| GlaI | GCGC | 1 cut(s) | 185 |
| GluI | GCNGC | 6 cut(s) | 22, 109, 210, 331, 343, 346 |
| GsaI | CCCAGC | 1 cut(s) | 342 |
| HaeIII | GGCC | 1 cut(s) | 348 |
| HgaI | GACGC | 1 cut(s) | 136 |
| HhaI | GCGC | 1 cut(s) | 186 |
| Hin1II | CATG | 2 cut(s) | 13, 266 |
| Hin6I | GCGC | 1 cut(s) | 184 |
| HinP1I | GCGC | 1 cut(s) | 184 |
| HinfI | GANTC | 1 cut(s) | 91 |
| Hpy166II | GTNNAC | 1 cut(s) | 151 |
| Hpy188I | TCNGA | 1 cut(s) | 192 |
| Hpy8I | GTNNAC | 1 cut(s) | 151 |
| HpyAV | CCTTC | 1 cut(s) | 64 |
| HpyCH4V | TGCA | 4 cut(s) | 199, 212, 258, 333 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 114, 339 |
| HpyF3I | CTNAG | 3 cut(s) | 135, 189, 252 |
| Hsp92II | CATG | 2 cut(s) | 13, 266 |
| HspAI | GCGC | 1 cut(s) | 184 |
| Kzo9I | GATC | 2 cut(s) | 118, 214 |
| LpnPI | CCDG | 5 cut(s) | 118, 185, 269, 337, 352 |
| Lsp1109I | GCAGC | 3 cut(s) | 196, 317, 329 |
| MaeI | CTAG | 1 cut(s) | 294 |
| MalI | GATC | 2 cut(s) | 120, 216 |
| MboI | GATC | 2 cut(s) | 118, 214 |
| MboII | GAAGA | 1 cut(s) | 215 |
| MflI | RGATCY | 1 cut(s) | 214 |
| MluCI | AATT | 1 cut(s) | 14 |
| MnlI | CCTC | 7 cut(s) | 67, 107, 121, 237, 290, 295, 298 |
| MseI | TTAA | 1 cut(s) | 51 |
| MspA1I | CMGCKG | 1 cut(s) | 342 |
| MvnI | CGCG | 1 cut(s) | 24 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 114, 339 |
| NdeII | GATC | 2 cut(s) | 118, 214 |
| NlaIII | CATG | 2 cut(s) | 13, 266 |
| PfeI | GAWTC | 1 cut(s) | 91 |
| PkrI | GCNGC | 6 cut(s) | 23, 110, 211, 332, 344, 347 |
| PspFI | CCCAGC | 1 cut(s) | 338 |
| PstI | CTGCAG | 1 cut(s) | 214 |
| PsuI | RGATCY | 1 cut(s) | 214 |
| PvuII | CAGCTG | 1 cut(s) | 342 |
| RsaI | GTAC | 2 cut(s) | 7, 65 |
| RsaNI | GTAC | 2 cut(s) | 6, 64 |
| SaqAI | TTAA | 1 cut(s) | 51 |
| SatI | GCNGC | 6 cut(s) | 22, 109, 210, 331, 343, 346 |
| Sau3AI | GATC | 2 cut(s) | 118, 214 |
| SetI | ASST | 5 cut(s) | 132, 211, 274, 344, 356 |
| SfcI | CTRYAG | 2 cut(s) | 151, 210 |
| Sse9I | AATT | 1 cut(s) | 14 |
| SsiI | CCGC | 3 cut(s) | 22, 109, 345 |
| SspMI | CTAG | 1 cut(s) | 294 |
| TaqI | TCGA | 1 cut(s) | 229 |
| TasI | AATT | 1 cut(s) | 14 |
| TauI | GCSGC | 3 cut(s) | 24, 111, 348 |
| TfiI | GAWTC | 1 cut(s) | 91 |
| Tru1I | TTAA | 1 cut(s) | 51 |
| Tru9I | TTAA | 1 cut(s) | 51 |
| TseI | GCWGC | 3 cut(s) | 209, 330, 342 |
| TspDTI | ATGAA | 1 cut(s) | 26 |
| XapI | RAATTY | 1 cut(s) | 14 |
| XmiI | GTMKAC | 1 cut(s) | 150 |
| XspI | CTAG | 1 cut(s) | 294 |