AT3G17640

Leucine rich repeat N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013307
Physical Location & Seq
Forward (+)
6032072 .. 6033861
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17640.1

Sequence Viewer

Length: 1191 bp
ATGAGCTACACTTTCTTTCTCCTTTTGCTCTCTCTTGTCCACTCCACTTTCTCTTCATTAGCTCCTACGGATCGAGCCGCGCTCCAATCCATCAGAGACTCTTTAACCGACATGCCCGGTTCAGCCTTCTTCTCCTCTTGGGACTTCACAGTTCCTGACCCTTGTTCCTCCTTCTCTGGCCTTACCTGCTCTTCTCGCGGCCGTGTCACCGGCTTAACTCTTGGCCCTAATCTCTCAGGCTCTCTCTCCCCTTCCATCTCCATTCTAACCCACTTAACCCAACTCATTCTCTACCCCGGTTCAGTCACCGGTCCTCTCCCTCCTCGGTTCGATTCCCTCCCTCTCCTTCGAGTCATTTCCTTAACAAGAAACCGTTTAACCGGTCCTATACCCGTATCTTTCTCATCTCTCTCAAATCTCCACACTCTTGACCTTAGCTATAACCAACTCTCTGGCTCTCTCCCTCCTTTTCTCACCACTCTTCCTCGACTCAAAGTCCTTGTTTTAGCCTCAAACCATTTCTCCAACAACCTTAAGCCTGTCTCTAGCCCATTGTTCCATTTAGACCTAAAGATGAACCAAATCTCCGGCCAACTCCCACCCGCTTTCCCGACTACTCTCCGGTACTTATCTCTATCCGGAAACTCAATGCAGGGCACAATCAATGCCATGGAGCCATTAACAGAGCTAATATACATCGATCTAAGCATGAACCAATTTACCGGCGCAATCCCTAGCTCACTCTTTAGTCCCACAATCTCAACAATGTTCCTACAACGAAACAACTTCACATCCATTGCCACCTCAAACGCCACGTCATTGTTACCTGAGGGCTCCATTGTTGATCTGAGCCATAACTCAATCTCCGGAGAGCTAACTCCCGCGCTTGTCGGAGCAGAGGCTTTGTTCTTGAACAACAACCGTCTCACTGGAGACATTCCAGAGGAATACGTCAAGAGCTTAATCAACGGTACAACAAAACAGCTCTTCTTGCAACATAACTACTTCACGAGATTCCCTTGGAACTCTGGTCTCCAACTACCAGACTCTGTTTCGCTCTGTTTGTCATATAACTGTATGGAGACAGATCCAGTCGTTGGTTTGTCCACGTGTCCGATCGAAGTTGCACCTCTGCTCTCAAGACCTGCTTCACAATGTTCAAGATTCTATAATCACAGCTCCACTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

396

Amino Acids

42.92

Weight (kDa)

6.43

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 22 - 64 1.6e-07 Leucine rich repeat N-terminal domain
LRR_8 PF13855 115 - 174 4.1e-09 Leucine rich repeat
LRR_4 PF12799 139 - 176 7.3e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013307)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17640
fragaria_vesca FvH4_6g39240
malus_domestica MD09G1144100.v1.1 MD17G1130800.v1.1
prunus_persica Prupe.3G183800_v2.0.a1
pyrus_communis pycom09g06350 pycom17g12320
rosa_chinensis RchiOBHm_Chr2g0153081
rosa_laevigata RLG00000020675
rosa_multiflora Rmu_sc0000218.1_g000028 Rmu_sc0036105.1_g000001
rosa_roxburghii Rroxscaffold_2G00095210
rosa_rugosa Rorug02G0437200
rosa_samantha Rh2AG499400 Rh2BG510700 Rh2CG485800 Rh2DG522400
rosa_wichuraiana Rw2G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 194, 1153
AccB7I CCANNNNNTGG 1 cut(s) 1097
AccII CGCG 3 cut(s) 80, 198, 884
AccIII TCCGGA 2 cut(s) 638, 866
AciI CCGC 4 cut(s) 78, 198, 603, 882
AclWI GGATC 2 cut(s) 78, 1082
AcoI YGGCCR 2 cut(s) 199, 589
AcvI CACGTG 1 cut(s) 1110
AfaI GTAC 2 cut(s) 626, 973
AfiI CCNNNNNNNGG 1 cut(s) 1097
AflII CTTAAG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 1109
AgeI ACCGGT 2 cut(s) 308, 380
AgsI TTSAA 2 cut(s) 913, 1161
AhdI GACNNNNNGTC 1 cut(s) 494
AjiI CACGTC 1 cut(s) 816
AloI GAACNNNNNNTCC 2 cut(s) 569, 601
AluBI AGCT 9 cut(s) 6, 62, 438, 688, 738, 874, 960, 985, 1179
AluI AGCT 9 cut(s) 6, 62, 438, 688, 738, 874, 960, 985, 1179
Alw26I GTCTC 6 cut(s) 90, 547, 927, 929, 1037, 1076
AlwI GGATC 2 cut(s) 78, 1082
AlwNI CAGNNNCTG 2 cut(s) 155, 1049
Aor13HI TCCGGA 2 cut(s) 638, 866
AoxI GGCC 4 cut(s) 178, 199, 223, 589
ArsI GACNNNNNNTTYG 2 cut(s) 800, 832
AsiGI ACCGGT 2 cut(s) 308, 380
AspLEI GCGC 3 cut(s) 82, 728, 886
AspS9I GGNCC 3 cut(s) 224, 311, 383
AsuC2I CCSGG 2 cut(s) 117, 297
AsuHPI GGTGA 3 cut(s) 199, 298, 466
AvaII GGWCC 2 cut(s) 311, 383
AxyI CCTNAGG 1 cut(s) 828
BaeGI GKGCMC 1 cut(s) 659
BanII GRGCYC 1 cut(s) 836
BauI CACGAG 1 cut(s) 1009
BbrPI CACGTG 1 cut(s) 1110
BccI CCATC 2 cut(s) 98, 263
BceAI ACGGC 1 cut(s) 186
BcnI CCSGG 2 cut(s) 117, 297
BcoDI GTCTC 6 cut(s) 90, 547, 927, 929, 1037, 1076
BfaI CTAG 2 cut(s) 546, 735
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 2 cut(s) 194, 1153
BisI GCNGC 2 cut(s) 78, 199
BlsI GCNGC 2 cut(s) 79, 200
Bme1390I CCNGG 2 cut(s) 117, 297
Bme18I GGWCC 2 cut(s) 311, 383
BmeRI GACNNNNNGTC 1 cut(s) 494
BmgBI CACGTC 1 cut(s) 816
BmgT120I GGNCC 3 cut(s) 224, 311, 383
BmiI GGNNCC 2 cut(s) 675, 835
BmrFI CCNGG 2 cut(s) 117, 297
BplI GAGNNNNNCTC 2 cut(s) 66, 98
BpmI CTGGAG 1 cut(s) 951
Bpu10I CCTNAGC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 1123
BpuMI CCSGG 2 cut(s) 117, 297
Bsa29I ATCGAT 1 cut(s) 699
BsaAI YACGTR 1 cut(s) 1110
BsaI GGTCTC 1 cut(s) 1037
BsaJI CCNNGG 4 cut(s) 295, 323, 669, 1019
BsaWI WCCGGW 5 cut(s) 308, 380, 621, 638, 866
BsaXI ACNNNNNCTCC 6 cut(s) 506, 536, 569, 599, 848, 878
Bsc4I CCNNNNNNNGG 1 cut(s) 1097
Bse118I RCCGGY 4 cut(s) 209, 308, 380, 722
Bse1I ACTGG 3 cut(s) 934, 1091, 1189
Bse21I CCTNAGG 1 cut(s) 828
Bse3DI GCAATG 1 cut(s) 795
BseAI TCCGGA 2 cut(s) 638, 866
BseCI ATCGAT 1 cut(s) 699
BseDI CCNNGG 4 cut(s) 295, 323, 669, 1019
BseGI GGATG 1 cut(s) 791
BseLI CCNNNNNNNGG 1 cut(s) 1097
BseMI GCAATG 1 cut(s) 795
BseMII CTCAG 3 cut(s) 249, 819, 839
BseNI ACTGG 3 cut(s) 934, 1091, 1189
BseRI GAGGAG 2 cut(s) 124, 312
BseSI GKGCMC 1 cut(s) 659
BseX3I CGGCCG 1 cut(s) 199
Bsh1236I CGCG 3 cut(s) 80, 198, 884
Bsh1285I CGRYCG 2 cut(s) 202, 1119
BshFI GGCC 4 cut(s) 180, 201, 225, 591
BshTI ACCGGT 2 cut(s) 308, 380
BshVI ATCGAT 1 cut(s) 699
BsiEI CGRYCG 2 cut(s) 202, 1119
BslFI GGGAC 2 cut(s) 155, 735
BslI CCNNNNNNNGG 1 cut(s) 1097
BsmAI GTCTC 6 cut(s) 90, 547, 927, 929, 1037, 1076
BsmBI CGTCTC 1 cut(s) 929
BsmFI GGGAC 2 cut(s) 155, 735
BsnI GGCC 4 cut(s) 180, 201, 225, 591
Bso31I GGTCTC 1 cut(s) 1037
Bsp1286I GDGCHC 2 cut(s) 659, 836
Bsp13I TCCGGA 2 cut(s) 638, 866
Bsp143I GATC 5 cut(s) 70, 700, 844, 1087, 1116
Bsp19I CCATGG 1 cut(s) 669
BspACI CCGC 4 cut(s) 78, 198, 603, 882
BspANI GGCC 4 cut(s) 180, 201, 225, 591
BspCNI CTCAG 3 cut(s) 248, 820, 840
BspDI ATCGAT 1 cut(s) 699
BspEI TCCGGA 2 cut(s) 638, 866
BspFNI CGCG 3 cut(s) 80, 198, 884
BspLI GGNNCC 2 cut(s) 675, 835
BspMI ACCTGC 2 cut(s) 194, 1153
BspPI GGATC 2 cut(s) 78, 1082
BspQI GCTCTTC 2 cut(s) 196, 992
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 1037
BsrDI GCAATG 1 cut(s) 795
BsrFI RCCGGY 4 cut(s) 209, 308, 380, 722
BsrI ACTGG 3 cut(s) 934, 1091, 1189
BssAI RCCGGY 4 cut(s) 209, 308, 380, 722
BssECI CCNNGG 4 cut(s) 295, 323, 669, 1019
BssMI GATC 5 cut(s) 70, 700, 844, 1087, 1116
BssSI CACGAG 1 cut(s) 1009
BssT1I CCWWGG 2 cut(s) 669, 1019
Bst2BI CACGAG 1 cut(s) 1009
Bst4CI ACNGT 5 cut(s) 151, 374, 923, 971, 1076
Bst6I CTCTTC 4 cut(s) 58, 196, 486, 992
BstAFI CTTAAG 1 cut(s) 533
BstBAI YACGTR 1 cut(s) 1110
BstDEI CTNAG 5 cut(s) 235, 434, 704, 828, 848
BstDSI CCRYGG 1 cut(s) 669
BstF5I GGATG 1 cut(s) 791
BstFNI CGCG 3 cut(s) 80, 198, 884
BstHHI GCGC 3 cut(s) 82, 728, 886
BstKTI GATC 5 cut(s) 73, 703, 847, 1090, 1119
BstMAI GTCTC 6 cut(s) 90, 547, 927, 929, 1037, 1076
BstMBI GATC 5 cut(s) 70, 700, 844, 1087, 1116
BstMCI CGRYCG 2 cut(s) 202, 1119
BstMWI GCNNNNNNNGC 3 cut(s) 186, 195, 991
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 115, 295
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 3 cut(s) 80, 198, 884
BstX2I RGATCY 1 cut(s) 1087
BstXI CCANNNNNNTGG 1 cut(s) 452
BstYI RGATCY 1 cut(s) 1087
BstZI CGGCCG 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 699
Bsu36I CCTNAGG 1 cut(s) 828
BsuRI GGCC 4 cut(s) 180, 201, 225, 591
BsuTUI ATCGAT 1 cut(s) 699
BtgI CCRYGG 1 cut(s) 669
BtrI CACGTC 1 cut(s) 816
BtsCI GGATG 1 cut(s) 791
BtsIMutI CAGTG 2 cut(s) 927, 1182
BveI ACCTGC 2 cut(s) 194, 1153
CaiI CAGNNNCTG 2 cut(s) 155, 1049
CfoI GCGC 3 cut(s) 82, 728, 886
Cfr10I RCCGGY 4 cut(s) 209, 308, 380, 722
Cfr13I GGNCC 3 cut(s) 224, 311, 383
ClaI ATCGAT 1 cut(s) 699
Csp6I GTAC 2 cut(s) 625, 972
CspAI ACCGGT 2 cut(s) 308, 380
CviAII CATG 3 cut(s) 112, 670, 709
CviQI GTAC 2 cut(s) 625, 972
DdeI CTNAG 5 cut(s) 235, 434, 704, 828, 848
DpnI GATC 5 cut(s) 72, 702, 846, 1089, 1118
DpnII GATC 5 cut(s) 70, 700, 844, 1087, 1116
DriI GACNNNNNGTC 1 cut(s) 494
EaeI YGGCCR 2 cut(s) 199, 589
EagI CGGCCG 1 cut(s) 199
Eam1104I CTCTTC 4 cut(s) 58, 196, 486, 992
Eam1105I GACNNNNNGTC 1 cut(s) 494
EarI CTCTTC 4 cut(s) 58, 196, 486, 992
EclXI CGGCCG 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 669, 1019
Eco24I GRGCYC 1 cut(s) 836
Eco31I GGTCTC 1 cut(s) 1037
Eco47I GGWCC 2 cut(s) 311, 383
Eco52I CGGCCG 1 cut(s) 199
Eco72I CACGTG 1 cut(s) 1110
Eco81I CCTNAGG 1 cut(s) 828
EcoT14I CCWWGG 2 cut(s) 669, 1019
EcoT38I GRGCYC 1 cut(s) 836
ErhI CCWWGG 2 cut(s) 669, 1019
Esp3I CGTCTC 1 cut(s) 929
FaeI CATG 3 cut(s) 115, 673, 712
FalI AAGNNNNNCTT 2 cut(s) 1132, 1164
FaqI GGGAC 2 cut(s) 155, 735
FatI CATG 3 cut(s) 111, 669, 708
FauI CCCGC 2 cut(s) 610, 889
Fnu4HI GCNGC 2 cut(s) 78, 199
FokI GGATG 1 cut(s) 778
FriOI GRGCYC 1 cut(s) 836
Fsp4HI GCNGC 2 cut(s) 78, 199
FspBI CTAG 2 cut(s) 546, 735
GlaI GCGC 3 cut(s) 81, 727, 885
GluI GCNGC 2 cut(s) 78, 199
GsuI CTGGAG 1 cut(s) 951
HaeIII GGCC 4 cut(s) 180, 201, 225, 591
HhaI GCGC 3 cut(s) 82, 728, 886
Hin1II CATG 3 cut(s) 115, 673, 712
Hin6I GCGC 3 cut(s) 80, 726, 884
HinP1I GCGC 3 cut(s) 80, 726, 884
HinfI GANTC 7 cut(s) 98, 332, 351, 489, 1014, 1046, 1164
HphI GGTGA 3 cut(s) 199, 298, 466
Hpy166II GTNNAC 2 cut(s) 40, 1107
Hpy188I TCNGA 4 cut(s) 95, 849, 893, 1116
Hpy8I GTNNAC 2 cut(s) 40, 1107
HpyAV CCTTC 4 cut(s) 136, 181, 261, 356
HpyCH4III ACNGT 5 cut(s) 151, 374, 923, 971, 1076
HpyCH4IV ACGT 3 cut(s) 815, 951, 1109
HpyCH4V TGCA 3 cut(s) 652, 994, 1127
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 195, 991
HpyF3I CTNAG 5 cut(s) 235, 434, 704, 828, 848
HpySE526I ACGT 3 cut(s) 815, 951, 1109
Hsp92II CATG 3 cut(s) 115, 673, 712
HspAI GCGC 3 cut(s) 80, 726, 884
Kpn2I TCCGGA 2 cut(s) 638, 866
Kzo9I GATC 5 cut(s) 70, 700, 844, 1087, 1116
LguI GCTCTTC 2 cut(s) 196, 992
LmnI GCTCC 6 cut(s) 67, 87, 673, 839, 893, 1184
MaeI CTAG 2 cut(s) 546, 735
MaeII ACGT 3 cut(s) 815, 951, 1109
MaeIII GTNAC 3 cut(s) 205, 304, 822
MalI GATC 5 cut(s) 72, 702, 846, 1089, 1118
MboI GATC 5 cut(s) 70, 700, 844, 1087, 1116
MboII GAAGA 5 cut(s) 45, 121, 183, 473, 979
MflI RGATCY 1 cut(s) 1087
MhlI GDGCHC 2 cut(s) 659, 836
MluCI AATT 1 cut(s) 716
MlyI GAGTC 4 cut(s) 92, 360, 483, 1040
MmeI TCCRAC 3 cut(s) 549, 871, 1060
MroI TCCGGA 2 cut(s) 638, 866
MseI TTAA 9 cut(s) 104, 215, 275, 362, 377, 534, 680, 962, 1189
MspCI CTTAAG 1 cut(s) 533
MspR9I CCNGG 2 cut(s) 117, 297
MvnI CGCG 3 cut(s) 80, 198, 884
MwoI GCNNNNNNNGC 3 cut(s) 186, 195, 991
NciI CCSGG 2 cut(s) 117, 297
NcoI CCATGG 1 cut(s) 669
NdeII GATC 5 cut(s) 70, 700, 844, 1087, 1116
NlaIII CATG 3 cut(s) 115, 673, 712
NlaIV GGNNCC 2 cut(s) 675, 835
NmuCI GTSAC 2 cut(s) 205, 304
NspI RCATGY 1 cut(s) 115
PciSI GCTCTTC 2 cut(s) 196, 992
PfeI GAWTC 3 cut(s) 332, 1014, 1164
PflMI CCANNNNNTGG 1 cut(s) 1097
PinAI ACCGGT 2 cut(s) 308, 380
PkrI GCNGC 2 cut(s) 79, 200
Ple19I CGATCG 1 cut(s) 1119
PleI GAGTC 4 cut(s) 92, 359, 483, 1040
PmaCI CACGTG 1 cut(s) 1110
PmlI CACGTG 1 cut(s) 1110
PpsI GAGTC 4 cut(s) 92, 359, 483, 1040
Ppu21I YACGTR 1 cut(s) 1110
PspCI CACGTG 1 cut(s) 1110
PspN4I GGNNCC 2 cut(s) 675, 835
PspPI GGNCC 3 cut(s) 224, 311, 383
PstNI CAGNNNCTG 2 cut(s) 155, 1049
PsuI RGATCY 1 cut(s) 1087
PvuI CGATCG 1 cut(s) 1119
RsaI GTAC 2 cut(s) 626, 973
RsaNI GTAC 2 cut(s) 625, 972
SapI GCTCTTC 2 cut(s) 196, 992
SaqAI TTAA 9 cut(s) 104, 215, 275, 362, 377, 534, 680, 962, 1189
SatI GCNGC 2 cut(s) 78, 199
Sau3AI GATC 5 cut(s) 70, 700, 844, 1087, 1116
Sau96I GGNCC 3 cut(s) 224, 311, 383
SchI GAGTC 4 cut(s) 92, 360, 483, 1040
ScrFI CCNGG 2 cut(s) 117, 297
SduI GDGCHC 2 cut(s) 659, 836
SinI GGWCC 2 cut(s) 311, 383
SmlI CTYRAG 2 cut(s) 533, 1138
SmoI CTYRAG 2 cut(s) 533, 1138
Sse9I AATT 1 cut(s) 716
SsiI CCGC 4 cut(s) 78, 198, 603, 882
SspMI CTAG 2 cut(s) 546, 735
StyD4I CCNGG 2 cut(s) 115, 295
StyI CCWWGG 2 cut(s) 669, 1019
TaaI ACNGT 5 cut(s) 151, 374, 923, 971, 1076
TaiI ACGT 3 cut(s) 818, 954, 1112
TaqI TCGA 6 cut(s) 73, 330, 349, 487, 699, 1119
TasI AATT 1 cut(s) 716
TauI GCSGC 2 cut(s) 80, 201
TfiI GAWTC 3 cut(s) 332, 1014, 1164
Tru1I TTAA 9 cut(s) 104, 215, 275, 362, 377, 534, 680, 962, 1189
Tru9I TTAA 9 cut(s) 104, 215, 275, 362, 377, 534, 680, 962, 1189
TscAI CASTG 2 cut(s) 934, 1189
TseFI GTSAC 2 cut(s) 205, 304
Tsp45I GTSAC 2 cut(s) 205, 304
TspDTI ATGAA 3 cut(s) 45, 590, 725
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 2 cut(s) 934, 1189
Van91I CCANNNNNTGG 1 cut(s) 1097
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 2 cut(s) 311, 383
XceI RCATGY 1 cut(s) 115
XspI CTAG 2 cut(s) 546, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.