Rmu_sc0036105.1_g000001

Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036105.1
OG0013307
Physical Location & Seq
Forward (+)
1 .. 394
394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036105.1_g000001.1.cds

Sequence Viewer

Length: 394 bp
ctccgggtgggtcccttcggtggtcccggaggatcagccatcgtacggcgagggatcgatcgtggacttgagccacaactcgctcacgggtgagctgtcgccgattttggcaagcgtggagagcctgtatttgaataacaaccgtctgatcgggacggttccgagggagtacgttaagagcgtgtacctgggcaccaccagaacattgtacttgcaacacaattacctatcccggtttccggtggagcctgggtcggcattgccggacacggtgtcgttgtgcttgagttacaactgcatggtgccgccggtgggactggcggcgtgcccgaccagcgcgggcaccgagctgtcccggccggcgtcgcagtgtacggtgtttaattacggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

130

Amino Acids

13.95

Weight (kDa)

4.92

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013307)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17640
fragaria_vesca FvH4_6g39240
malus_domestica MD09G1144100.v1.1 MD17G1130800.v1.1
prunus_persica Prupe.3G183800_v2.0.a1
pyrus_communis pycom09g06350 pycom17g12320
rosa_chinensis RchiOBHm_Chr2g0153081
rosa_laevigata RLG00000020675
rosa_multiflora Rmu_sc0000218.1_g000028 Rmu_sc0036105.1_g000001
rosa_roxburghii Rroxscaffold_2G00095210
rosa_rugosa Rorug02G0437200
rosa_samantha Rh2AG499400 Rh2BG510700 Rh2CG485800 Rh2DG522400
rosa_wichuraiana Rw2G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 192, 302, 342
AccII CGCG 1 cut(s) 339
AciI CCGC 3 cut(s) 306, 321, 339
AclWI GGATC 2 cut(s) 40, 62
AcoI YGGCCR 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 5 cut(s) 45, 171, 186, 210, 374
AfiI CCNNNNNNNGG 4 cut(s) 20, 45, 239, 312
AgsI TTSAA 1 cut(s) 134
AhdI GACNNNNNGTC 1 cut(s) 272
AjnI CCWGG 2 cut(s) 187, 248
AluBI AGCT 2 cut(s) 95, 350
AluI AGCT 2 cut(s) 95, 350
AlwI GGATC 2 cut(s) 40, 62
AoxI GGCC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 2 cut(s) 11, 23
AsuC2I CCSGG 4 cut(s) 5, 27, 233, 356
AsuHPI GGTGA 1 cut(s) 102
AvaII GGWCC 2 cut(s) 11, 23
BaeGI GKGCMC 3 cut(s) 195, 330, 345
BanI GGYRCC 3 cut(s) 192, 302, 342
BccI CCATC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 2 cut(s) 189, 250
BcnI CCSGG 4 cut(s) 5, 27, 233, 356
BfaI CTAG 1 cut(s) 392
BisI GCNGC 2 cut(s) 306, 322
BlsI GCNGC 2 cut(s) 307, 323
Bme1390I CCNGG 6 cut(s) 5, 27, 189, 233, 250, 356
Bme18I GGWCC 2 cut(s) 11, 23
BmeRI GACNNNNNGTC 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 11, 23
BmiI GGNNCC 8 cut(s) 12, 13, 25, 160, 194, 247, 304, 344
BmrFI CCNGG 6 cut(s) 5, 27, 189, 233, 250, 356
BpuEI CTTGAG 2 cut(s) 89, 305
BpuMI CCSGG 4 cut(s) 5, 27, 233, 356
Bsa29I ATCGAT 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 363
BsaJI CCNNGG 3 cut(s) 162, 188, 249
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 4 cut(s) 111, 141, 237, 267
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 45, 239, 312
Bse118I RCCGGY 2 cut(s) 308, 359
Bse1I ACTGG 1 cut(s) 322
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 2 cut(s) 189, 250
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 162, 188, 249
BseLI CCNNNNNNNGG 4 cut(s) 20, 45, 239, 312
BseMI GCAATG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 322
BseSI GKGCMC 3 cut(s) 195, 330, 345
BseX3I CGGCCG 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 2 cut(s) 61, 360
BshFI GGCC 1 cut(s) 359
BshNI GGYRCC 3 cut(s) 192, 302, 342
BshVI ATCGAT 1 cut(s) 57
BsiEI CGRYCG 2 cut(s) 61, 360
BsiSI CCGG 8 cut(s) 4, 27, 233, 240, 264, 309, 356, 360
BsiWI CGTACG 1 cut(s) 43
BslFI GGGAC 4 cut(s) 9, 167, 328, 338
BslI CCNNNNNNNGG 4 cut(s) 20, 45, 239, 312
BsmFI GGGAC 4 cut(s) 9, 167, 328, 338
BsnI GGCC 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 195, 330, 345
Bsp143I GATC 4 cut(s) 32, 54, 58, 148
BspACI CCGC 3 cut(s) 306, 321, 339
BspANI GGCC 1 cut(s) 359
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 8 cut(s) 12, 13, 25, 160, 194, 247, 304, 344
BspPI GGATC 2 cut(s) 40, 62
BspT107I GGYRCC 3 cut(s) 192, 302, 342
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 308, 359
BsrI ACTGG 1 cut(s) 322
BssAI RCCGGY 2 cut(s) 308, 359
BssECI CCNNGG 3 cut(s) 162, 188, 249
BssMI GATC 4 cut(s) 32, 54, 58, 148
BssNI GRCGYC 1 cut(s) 363
Bst2UI CCWGG 2 cut(s) 189, 250
Bst4CI ACNGT 4 cut(s) 144, 158, 272, 377
BstACI GRCGYC 1 cut(s) 363
BstC8I GCNNGC 4 cut(s) 113, 326, 341, 361
BstFNI CGCG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 4 cut(s) 35, 57, 61, 151
BstMBI GATC 4 cut(s) 32, 54, 58, 148
BstMCI CGRYCG 2 cut(s) 61, 360
BstMWI GCNNNNNNNGC 4 cut(s) 121, 334, 356, 365
BstNI CCWGG 2 cut(s) 189, 250
BstSCI CCNGG 6 cut(s) 3, 25, 187, 231, 248, 354
BstSLI GKGCMC 3 cut(s) 195, 330, 345
BstUI CGCG 1 cut(s) 339
BstZI CGGCCG 1 cut(s) 357
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 359
BsuTUI ATCGAT 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 4 cut(s) 113, 326, 341, 361
CfoI GCGC 1 cut(s) 339
Cfr10I RCCGGY 2 cut(s) 308, 359
Cfr13I GGNCC 2 cut(s) 11, 23
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 352
Csp6I GTAC 5 cut(s) 44, 170, 185, 209, 373
CviAII CATG 1 cut(s) 299
CviJI RGCY 8 cut(s) 38, 73, 95, 124, 248, 350, 359, 391
CviKI_1 RGCY 8 cut(s) 38, 73, 95, 124, 248, 350, 359, 391
CviQI GTAC 5 cut(s) 44, 170, 185, 209, 373
DpnI GATC 4 cut(s) 34, 56, 60, 150
DpnII GATC 4 cut(s) 32, 54, 58, 148
DriI GACNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 357
EagI CGGCCG 1 cut(s) 357
Eam1105I GACNNNNNGTC 1 cut(s) 272
EclXI CGGCCG 1 cut(s) 357
Eco47I GGWCC 2 cut(s) 11, 23
Eco52I CGGCCG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 187, 248
FaeI CATG 1 cut(s) 302
FaiI YATR 1 cut(s) 300
FaqI GGGAC 4 cut(s) 9, 167, 328, 338
FatI CATG 1 cut(s) 298
FauI CCCGC 1 cut(s) 332
Fnu4HI GCNGC 2 cut(s) 306, 322
Fsp4HI GCNGC 2 cut(s) 306, 322
FspBI CTAG 1 cut(s) 392
GlaI GCGC 1 cut(s) 338
GluI GCNGC 2 cut(s) 306, 322
HaeIII GGCC 1 cut(s) 359
HapII CCGG 8 cut(s) 4, 27, 233, 240, 264, 309, 356, 360
HgaI GACGC 1 cut(s) 352
HhaI GCGC 1 cut(s) 339
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 1 cut(s) 302
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HpaII CCGG 8 cut(s) 4, 27, 233, 240, 264, 309, 356, 360
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 3 cut(s) 65, 185, 373
Hpy188I TCNGA 2 cut(s) 148, 163
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 3 cut(s) 65, 185, 373
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 4 cut(s) 144, 158, 272, 377
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 215, 298
HpyF10VI GCNNNNNNNGC 4 cut(s) 121, 334, 356, 365
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 1 cut(s) 302
HspAI GCGC 1 cut(s) 337
KflI GGGWCCC 1 cut(s) 11
KroI GCCGGC 1 cut(s) 359
KroNI GCCGGC 1 cut(s) 361
Kzo9I GATC 4 cut(s) 32, 54, 58, 148
LmnI GCTCC 1 cut(s) 245
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 288
MalI GATC 4 cut(s) 34, 56, 60, 150
MboI GATC 4 cut(s) 32, 54, 58, 148
MhlI GDGCHC 3 cut(s) 195, 330, 345
MluCI AATT 2 cut(s) 221, 383
MnlI CCTC 3 cut(s) 23, 44, 157
MroNI GCCGGC 1 cut(s) 359
MseI TTAA 2 cut(s) 175, 382
MspI CCGG 8 cut(s) 4, 27, 233, 240, 264, 309, 356, 360
MspR9I CCNGG 6 cut(s) 5, 27, 189, 233, 250, 356
MvaI CCWGG 2 cut(s) 189, 250
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 4 cut(s) 121, 334, 356, 365
NaeI GCCGGC 1 cut(s) 361
NciI CCSGG 4 cut(s) 5, 27, 233, 356
NdeII GATC 4 cut(s) 32, 54, 58, 148
NgoMIV GCCGGC 1 cut(s) 359
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 8 cut(s) 12, 13, 25, 160, 194, 247, 304, 344
PcsI WCGNNNNNNNCGW 1 cut(s) 178
PdiI GCCGGC 1 cut(s) 361
Pfl23II CGTACG 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 25
PkrI GCNGC 2 cut(s) 307, 323
Ple19I CGATCG 1 cut(s) 61
PpuMI RGGWCCY 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 187, 248
PspGI CCWGG 2 cut(s) 187, 248
PspLI CGTACG 1 cut(s) 43
PspN4I GGNNCC 8 cut(s) 12, 13, 25, 160, 194, 247, 304, 344
PspPI GGNCC 2 cut(s) 11, 23
PspPPI RGGWCCY 1 cut(s) 11
PvuI CGATCG 1 cut(s) 61
RsaI GTAC 5 cut(s) 45, 171, 186, 210, 374
RsaNI GTAC 5 cut(s) 44, 170, 185, 209, 373
SaqAI TTAA 2 cut(s) 175, 382
SatI GCNGC 2 cut(s) 306, 322
Sau3AI GATC 4 cut(s) 32, 54, 58, 148
Sau96I GGNCC 2 cut(s) 11, 23
ScrFI CCNGG 6 cut(s) 5, 27, 189, 233, 250, 356
SduI GDGCHC 3 cut(s) 195, 330, 345
SetI ASST 5 cut(s) 97, 175, 190, 229, 352
SgrAI CRCCGGYG 1 cut(s) 308
SinI GGWCC 2 cut(s) 11, 23
SmlI CTYRAG 2 cut(s) 68, 284
SmoI CTYRAG 2 cut(s) 68, 284
Sse9I AATT 2 cut(s) 221, 383
SsiI CCGC 3 cut(s) 306, 321, 339
SspMI CTAG 1 cut(s) 392
StyD4I CCNGG 6 cut(s) 3, 25, 187, 231, 248, 354
TaaI ACNGT 4 cut(s) 144, 158, 272, 377
TaiI ACGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 57
TasI AATT 2 cut(s) 221, 383
TatI WGTACW 1 cut(s) 208
TauI GCSGC 2 cut(s) 308, 324
Tru1I TTAA 2 cut(s) 175, 382
Tru9I TTAA 2 cut(s) 175, 382
TscAI CASTG 1 cut(s) 375
TspRI CASTG 1 cut(s) 375
VpaK11BI GGWCC 2 cut(s) 11, 23
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.