AT3G17670

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013286
Physical Location & Seq
Forward (+)
6040797 .. 6042196
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17670.1

Sequence Viewer

Length: 711 bp
ATGTCTTCCGTCGCTTTGCCGGCGATGAGCTGCCGGAGCTCAGGTGAACAAGTGAAGGAGATTCGCGTTTGTACGAATCGCACCTGCCGAAGACAAGGCTCCTTCCAGATTCTCGAGACTTTAACAGCTCTCGCACCTCCCGAACTCCGAGTCACTCACTGCGCTTGCCTCGGCCGATGCGGCTCCGGTCCAAACCTCGTGGCTCTCCCTCAAGGTCTCATCCTACGTCACTGCGCCACGCCTTCTCGAGCTGCTGAAATTTTGTTCAGCCTATGTGGTGACGGTCGTGAAGCTTCTTCATCCTCCGCCGTCACAGACGCTCTCACGGCTTTAGCGTTAACCAACAATGCTCTCTCTCAAATCGATGCGGGAAATTTCTCTGAAGCCGAAGCACTTCTCACTCAGGCTTTAGAGCTGAAACCCTACGGTGGCTTGCATAGAATATTCAAACACAGATCAGTAGCAAAATTGGGAATGCTTGATTACTCTGGGGCTCTTGAAGATATAAGCCAAGCTCTAGCTTTAGCTCCTAACTATTCTGAGCCCTACATATGCCAAGGGGATGTCTACGTAGCAAAAGGTCAATATGATCTTGCAGAGAAGTCATACTTGACATGTCTAGAGATAGATCCTTCTCTTCGCAGATCGAAACCATTCAAGGCCCGGATTGCGAAACTTCAACAGAAAGTTGTTGAACTAGATGTAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0006457 GO:0008022 GO:0008150 GO:0009987 GO:0030544 GO:0031072 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

236

Amino Acids

25.42

Weight (kDa)

8.02

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17670 AT3G17670
fragaria_vesca FvH4_5g18270 FvH4_5g18270
malus_domestica MD06G1238300.v1.1
prunus_persica Prupe.5G242200_v2.0.a1 Prupe.5G242200_v2.0.a1
pyrus_communis pycom06g21380
rosa_chinensis RchiOBHm_Chr7g0177311
rosa_laevigata RLG00000005547
rosa_multiflora Rmu_sc0005310.1_g000006
rosa_roxburghii Rroxscaffold_3G00275950
rosa_rugosa Rorug06G0404800
rosa_samantha Rh7AG004700 Rh7BG004600 Rh7CG004500 Rh7DG004500
rosa_wichuraiana Rw7G000390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 567
AccII CGCG 1 cut(s) 66
AciI CCGC 3 cut(s) 180, 306, 368
AclWI GGATC 1 cut(s) 623
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 2 cut(s) 258, 373
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 428
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 5 cut(s) 448, 500, 658, 680, 695
AluBI AGCT 9 cut(s) 30, 39, 128, 251, 293, 415, 515, 521, 527
AluI AGCT 9 cut(s) 30, 39, 128, 251, 293, 415, 515, 521, 527
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 110, 221
AlwI GGATC 1 cut(s) 623
Ama87I CYCGRG 2 cut(s) 113, 246
AoxI GGCC 2 cut(s) 172, 660
ApeKI GCWGC 2 cut(s) 30, 251
ApoI RAATTY 2 cut(s) 258, 373
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
Asp700I GAANNNNTTC 2 cut(s) 393, 653
AspLEI GCGC 2 cut(s) 164, 236
AspS9I GGNCC 2 cut(s) 188, 661
AsuC2I CCSGG 1 cut(s) 664
AsuHPI GGTGA 2 cut(s) 56, 290
AvaI CYCGRG 2 cut(s) 113, 246
AvaII GGWCC 1 cut(s) 188
BanII GRGCYC 3 cut(s) 41, 496, 546
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 17, 238
BceAI ACGGC 2 cut(s) 293, 342
BcnI CCSGG 1 cut(s) 664
BcoDI GTCTC 2 cut(s) 110, 221
BfaI CTAG 3 cut(s) 518, 620, 698
BfuAI ACCTGC 1 cut(s) 92
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 3 cut(s) 31, 181, 252
BlsI GCNGC 3 cut(s) 32, 182, 253
Bme1390I CCNGG 1 cut(s) 664
Bme18I GGWCC 1 cut(s) 188
BmeT110I CYCGRG 2 cut(s) 113, 246
BmgT120I GGNCC 2 cut(s) 188, 661
BmiI GGNNCC 2 cut(s) 100, 184
BmrFI CCNGG 1 cut(s) 664
BmsI GCATC 2 cut(s) 167, 355
BpiI GAAGAC 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 664
Bsa29I ATCGAT 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 571
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 169, 556
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse118I RCCGGY 1 cut(s) 19
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 169, 556
BseGI GGATG 3 cut(s) 219, 299, 568
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 3 cut(s) 54, 416, 531
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 17, 238
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 2 cut(s) 175, 286
BshFI GGCC 2 cut(s) 174, 662
BshVI ATCGAT 1 cut(s) 363
BsiEI CGRYCG 2 cut(s) 175, 286
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 2 cut(s) 113, 246
BsiSI CCGG 4 cut(s) 20, 34, 186, 664
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 110, 221
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 2 cut(s) 174, 662
Bso31I GGTCTC 1 cut(s) 221
BsoBI CYCGRG 2 cut(s) 113, 246
Bsp1286I GDGCHC 3 cut(s) 41, 496, 546
Bsp143I GATC 4 cut(s) 455, 589, 628, 644
BspACI CCGC 3 cut(s) 180, 306, 368
BspANI GGCC 2 cut(s) 174, 662
BspCNI CTCAG 3 cut(s) 53, 415, 532
BspDI ATCGAT 1 cut(s) 363
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 100, 184
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 169, 556
BssMI GATC 4 cut(s) 455, 589, 628, 644
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 556
Bst2BI CACGAG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 284, 428
Bst6I CTCTTC 1 cut(s) 642
BstBAI YACGTR 1 cut(s) 571
BstC8I GCNNGC 3 cut(s) 21, 166, 434
BstDEI CTNAG 3 cut(s) 40, 402, 540
BstF5I GGATG 3 cut(s) 219, 299, 568
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 2 cut(s) 164, 236
BstKTI GATC 4 cut(s) 458, 592, 631, 647
BstMAI GTCTC 2 cut(s) 110, 221
BstMBI GATC 4 cut(s) 455, 589, 628, 644
BstMCI CGRYCG 2 cut(s) 175, 286
BstMWI GCNNNNNNNGC 5 cut(s) 20, 36, 180, 326, 668
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 1 cut(s) 662
BstSNI TACGTA 1 cut(s) 571
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 17, 238
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
BstZI CGGCCG 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 2 cut(s) 174, 662
BsuTUI ATCGAT 1 cut(s) 363
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 3 cut(s) 219, 299, 568
BtsI GCAGTG 2 cut(s) 157, 229
BtsIMutI CAGTG 2 cut(s) 157, 229
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 3 cut(s) 21, 166, 434
CfoI GCGC 2 cut(s) 164, 236
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 188, 661
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 72
CspCI CAANNNNNGTGG 2 cut(s) 180, 215
CviAII CATG 1 cut(s) 615
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 40, 402, 540
DpnI GATC 4 cut(s) 457, 591, 630, 646
DpnII GATC 4 cut(s) 455, 589, 628, 644
EaeI YGGCCR 1 cut(s) 172
EagI CGGCCG 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
EciI GGCGGA 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 39
EclXI CGGCCG 1 cut(s) 172
Eco105I TACGTA 1 cut(s) 571
Eco130I CCWWGG 1 cut(s) 556
Eco24I GRGCYC 3 cut(s) 41, 496, 546
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 188
Eco52I CGGCCG 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 402
Eco88I CYCGRG 2 cut(s) 113, 246
EcoICRI GAGCTC 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 3 cut(s) 41, 496, 546
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 1 cut(s) 618
FaiI YATR 9 cut(s) 274, 438, 506, 551, 553, 588, 607, 616, 709
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FatI CATG 1 cut(s) 614
FauI CCCGC 1 cut(s) 361
FauNDI CATATG 1 cut(s) 551
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 3 cut(s) 31, 181, 252
FokI GGATG 3 cut(s) 206, 286, 575
FriOI GRGCYC 3 cut(s) 41, 496, 546
Fsp4HI GCNGC 3 cut(s) 31, 181, 252
FspBI CTAG 3 cut(s) 518, 620, 698
GlaI GCGC 2 cut(s) 163, 235
GluI GCNGC 3 cut(s) 31, 181, 252
HaeIII GGCC 2 cut(s) 174, 662
HapII CCGG 4 cut(s) 20, 34, 186, 664
HgaI GACGC 1 cut(s) 326
HhaI GCGC 2 cut(s) 164, 236
Hin1II CATG 1 cut(s) 618
Hin6I GCGC 2 cut(s) 162, 234
HinP1I GCGC 2 cut(s) 162, 234
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 4 cut(s) 61, 76, 109, 150
HpaI GTTAAC 1 cut(s) 339
HpaII CCGG 4 cut(s) 20, 34, 186, 664
HphI GGTGA 2 cut(s) 56, 290
Hpy166II GTNNAC 3 cut(s) 47, 339, 568
Hpy188I TCNGA 3 cut(s) 149, 382, 541
Hpy188III TCNNGA 8 cut(s) 106, 113, 115, 140, 246, 287, 497, 620
Hpy8I GTNNAC 3 cut(s) 47, 339, 568
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 4 cut(s) 49, 112, 252, 642
HpyCH4III ACNGT 2 cut(s) 284, 428
HpyCH4IV ACGT 2 cut(s) 226, 570
HpyCH4V TGCA 2 cut(s) 436, 596
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 36, 180, 326, 668
HpyF3I CTNAG 3 cut(s) 40, 402, 540
HpySE526I ACGT 2 cut(s) 226, 570
Hsp92II CATG 1 cut(s) 618
HspAI GCGC 2 cut(s) 162, 234
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
KspAI GTTAAC 1 cut(s) 339
Kzo9I GATC 4 cut(s) 455, 589, 628, 644
LmnI GCTCC 4 cut(s) 36, 104, 188, 532
LpnPI CCDG 9 cut(s) 27, 33, 47, 97, 119, 199, 389, 474, 677
Lsp1109I GCAGC 2 cut(s) 17, 238
LweI GCATC 2 cut(s) 167, 355
MaeI CTAG 3 cut(s) 518, 620, 698
MaeII ACGT 2 cut(s) 226, 570
MaeIII GTNAC 5 cut(s) 151, 227, 278, 310, 703
MalI GATC 4 cut(s) 457, 591, 630, 646
MboI GATC 4 cut(s) 455, 589, 628, 644
MboII GAAGA 4 cut(s) 102, 288, 512, 629
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 3 cut(s) 41, 496, 546
MluCI AATT 3 cut(s) 258, 373, 467
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 5 cut(s) 147, 179, 206, 219, 313
MroNI GCCGGC 1 cut(s) 19
MroXI GAANNNNTTC 2 cut(s) 393, 653
MseI TTAA 2 cut(s) 122, 338
MspI CCGG 4 cut(s) 20, 34, 186, 664
MspR9I CCNGG 1 cut(s) 664
Mva1269I GAATGC 1 cut(s) 480
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 5 cut(s) 20, 36, 180, 326, 668
NaeI GCCGGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 664
NdeI CATATG 1 cut(s) 551
NdeII GATC 4 cut(s) 455, 589, 628, 644
NgoMIV GCCGGC 1 cut(s) 19
NlaIII CATG 1 cut(s) 618
NlaIV GGNNCC 2 cut(s) 100, 184
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 4 cut(s) 151, 227, 278, 310
NspI RCATGY 1 cut(s) 618
PaeR7I CTCGAG 2 cut(s) 113, 246
PaqCI CACCTGC 1 cut(s) 92
PciI ACATGT 1 cut(s) 614
PcsI WCGNNNNNNNCGW 3 cut(s) 85, 138, 332
PctI GAATGC 1 cut(s) 480
PdiI GCCGGC 1 cut(s) 21
PdmI GAANNNNTTC 2 cut(s) 393, 653
PfeI GAWTC 3 cut(s) 61, 76, 109
PkrI GCNGC 3 cut(s) 32, 182, 253
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 571
PscI ACATGT 1 cut(s) 614
Psp124BI GAGCTC 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 100, 184
PspPI GGNCC 2 cut(s) 188, 661
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SacI GAGCTC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 122, 338
SatI GCNGC 3 cut(s) 31, 181, 252
Sau3AI GATC 4 cut(s) 455, 589, 628, 644
Sau96I GGNCC 2 cut(s) 188, 661
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 664
SduI GDGCHC 3 cut(s) 41, 496, 546
SfaNI GCATC 2 cut(s) 167, 355
Sfr274I CTCGAG 2 cut(s) 113, 246
SinI GGWCC 1 cut(s) 188
SlaI CTCGAG 2 cut(s) 113, 246
SmlI CTYRAG 3 cut(s) 113, 210, 246
SmoI CTYRAG 3 cut(s) 113, 210, 246
SnaBI TACGTA 1 cut(s) 571
Sse9I AATT 3 cut(s) 258, 373, 467
SsiI CCGC 3 cut(s) 180, 306, 368
SspI AATATT 1 cut(s) 444
SspMI CTAG 3 cut(s) 518, 620, 698
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 662
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 284, 428
TaiI ACGT 2 cut(s) 229, 573
TaqI TCGA 4 cut(s) 114, 247, 363, 647
TasI AATT 3 cut(s) 258, 373, 467
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 3 cut(s) 61, 76, 109
Tru1I TTAA 2 cut(s) 122, 338
Tru9I TTAA 2 cut(s) 122, 338
TscAI CASTG 2 cut(s) 164, 236
TseFI GTSAC 4 cut(s) 151, 227, 278, 310
TseI GCWGC 2 cut(s) 30, 251
Tsp45I GTSAC 4 cut(s) 151, 227, 278, 310
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 2 cut(s) 164, 236
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 2 cut(s) 258, 373
XbaI TCTAGA 1 cut(s) 619
XceI RCATGY 1 cut(s) 618
XhoI CTCGAG 2 cut(s) 113, 246
XmiI GTMKAC 1 cut(s) 567
XmnI GAANNNNTTC 2 cut(s) 393, 653
XspI CTAG 3 cut(s) 518, 620, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.