FvH4_5g18270

tetratricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013286
Physical Location & Seq
Forward (+)
10509985 .. 10511987
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18270.t2

Sequence Viewer

Length: 750 bp
ATGGAGGCCGTCTTTCCTCCACCTACAACTTCCAACAAGTCTCACTCCATCTTCATCACTTCCAATCCCACACCAAGACGACGCTCTAGTTTCATCACGTCGGAAATCCAGGAAATCCGGGTCTGCACCAACAGGAGCTGCCGTAGACAAGGCTCCATGCAGACCCTTGAGACCATCACGGCTCTAGCTCCCCCCACCGTCGCCGTCAAGTCCTGTGGATGTTTGAACCGCTGCGGCAACGGCCCCAACCTGGTGGCACTACCCACCGGCACTTTGGTCGGTCACTGCGGCACCATGTCTCGAGCCGCTGAGGTTCTCGTAGCACTGTGCGGAGGAGCTTGGGATTCCGCCGCTGCTGACAAGAGTTTGGAAGCGCTTGCGTTAAGGAATAAAGCTGAGATTGAGCTCAGCAACAACAATTTATCGCAGGCTGAGCTCTTCCTCACACAGGCTATAGAATTAAGACCAATTGGTGGTATTCATATAACATTCAAGGACAGGTCTATTGCAAGATTAGCATTGGGAAATCATTCTGGGGCGCTTGAAGATGCCGCACAAGCTTTGGAATTGAATCCTCTTTATCCGGAGGCTTATATTTGCCAAGGTGATGCATTCTTGGCAATGAGTCAATTTGATTCAGCTCACAAGTCATATTTGACAGCTCTACACATAGATCCTTCCATTCGACGCTCCAAGTCTTTCAAGGCTCGGATGGCAAACCTTGAGAAACTCACTGCTGCACCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0006457 GO:0008022 GO:0008150 GO:0009987 GO:0030544 GO:0031072 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

250

Amino Acids

26.75

Weight (kDa)

8.66

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17670 AT3G17670
fragaria_vesca FvH4_5g18270 FvH4_5g18270
malus_domestica MD06G1238300.v1.1
prunus_persica Prupe.5G242200_v2.0.a1 Prupe.5G242200_v2.0.a1
pyrus_communis pycom06g21380
rosa_chinensis RchiOBHm_Chr7g0177311
rosa_laevigata RLG00000005547
rosa_multiflora Rmu_sc0005310.1_g000006
rosa_roxburghii Rroxscaffold_3G00275950
rosa_rugosa Rorug06G0404800
rosa_samantha Rh7AG004700 Rh7BG004600 Rh7CG004500 Rh7DG004500
rosa_wichuraiana Rw7G000390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AccB7I CCANNNNNTGG 1 cut(s) 473
AccI GTMKAC 1 cut(s) 145
AccIII TCCGGA 1 cut(s) 583
AciI CCGC 8 cut(s) 229, 234, 288, 306, 330, 348, 351, 552
AclWI GGATC 1 cut(s) 668
AfeI AGCGCT 1 cut(s) 375
AfiI CCNNNNNNNGG 3 cut(s) 250, 448, 473
AgsI TTSAA 5 cut(s) 226, 493, 545, 571, 703
AjiI CACGTC 1 cut(s) 99
AjnI CCWGG 2 cut(s) 108, 249
AluBI AGCT 9 cut(s) 138, 188, 338, 395, 406, 436, 560, 641, 662
AluI AGCT 9 cut(s) 138, 188, 338, 395, 406, 436, 560, 641, 662
Alw21I GWGCWC 2 cut(s) 408, 438
Alw26I GTCTC 3 cut(s) 45, 164, 303
AlwI GGATC 1 cut(s) 668
AlwNI CAGNNNCTG 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 300
Aor13HI TCCGGA 1 cut(s) 583
Aor51HI AGCGCT 1 cut(s) 375
AoxI GGCC 2 cut(s) 6, 241
ApeKI GCWGC 4 cut(s) 138, 231, 353, 737
Asp700I GAANNNNTTC 1 cut(s) 529
AspLEI GCGC 2 cut(s) 376, 541
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 300
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 2 cut(s) 408, 438
Bbv12I GWGCWC 2 cut(s) 408, 438
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 4 cut(s) 125, 218, 340, 724
BccI CCATC 3 cut(s) 56, 182, 706
BceAI ACGGC 4 cut(s) 126, 188, 195, 256
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BciT130I CCWGG 2 cut(s) 110, 251
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 3 cut(s) 45, 164, 303
BfaI CTAG 2 cut(s) 87, 185
BfmI CTRYAG 1 cut(s) 453
BfoI RGCGCY 2 cut(s) 377, 542
BisI GCNGC 9 cut(s) 139, 232, 235, 289, 306, 351, 354, 552, 738
BlpI GCTNAGC 2 cut(s) 407, 432
BlsI GCNGC 9 cut(s) 140, 233, 236, 290, 307, 352, 355, 553, 739
Bme1390I CCNGG 3 cut(s) 110, 119, 251
BmeT110I CYCGRG 1 cut(s) 300
BmgBI CACGTC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 154, 244, 292
BmrFI CCNGG 3 cut(s) 110, 119, 251
BmsI GCATC 2 cut(s) 538, 598
Bpu10I CCTNAGC 1 cut(s) 309
Bpu1102I GCTNAGC 2 cut(s) 407, 432
BpuEI CTTGAG 2 cut(s) 188, 743
BpuMI CCSGG 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 601
BsaWI WCCGGW 1 cut(s) 583
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 448, 473
Bse118I RCCGGY 1 cut(s) 266
Bse3DI GCAATG 1 cut(s) 627
BseAI TCCGGA 1 cut(s) 583
BseBI CCWGG 2 cut(s) 110, 251
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 2 cut(s) 224, 717
BseLI CCNNNNNNNGG 3 cut(s) 250, 448, 473
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 4 cut(s) 300, 387, 421, 423
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 4 cut(s) 125, 218, 340, 724
BsgI GTGCAG 2 cut(s) 109, 723
BshFI GGCC 2 cut(s) 8, 243
BshNI GGYRCC 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 408, 438
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 3 cut(s) 118, 267, 584
BslI CCNNNNNNNGG 3 cut(s) 250, 448, 473
BsmAI GTCTC 3 cut(s) 45, 164, 303
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 2 cut(s) 8, 243
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 408, 438
Bsp13I TCCGGA 1 cut(s) 583
Bsp143I GATC 1 cut(s) 673
Bsp1720I GCTNAGC 2 cut(s) 407, 432
BspACI CCGC 8 cut(s) 229, 234, 288, 306, 330, 348, 351, 552
BspANI GGCC 2 cut(s) 8, 243
BspCNI CTCAG 4 cut(s) 301, 388, 420, 424
BspEI TCCGGA 1 cut(s) 583
BspLI GGNNCC 3 cut(s) 154, 244, 292
BspPI GGATC 1 cut(s) 668
BspQI GCTCTTC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 627
BsrFI RCCGGY 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 1 cut(s) 673
BssT1I CCWWGG 1 cut(s) 601
Bst2UI CCWGG 2 cut(s) 110, 251
Bst4CI ACNGT 2 cut(s) 199, 327
Bst6I CTCTTC 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 378, 429
BstDEI CTNAG 4 cut(s) 309, 396, 407, 432
BstENI CCTNNNNNAGG 1 cut(s) 446
BstF5I GGATG 2 cut(s) 224, 717
BstH2I RGCGCY 2 cut(s) 377, 542
BstHHI GCGC 2 cut(s) 376, 541
BstKTI GATC 1 cut(s) 676
BstMAI GTCTC 3 cut(s) 45, 164, 303
BstMBI GATC 1 cut(s) 673
BstMWI GCNNNNNNNGC 6 cut(s) 240, 433, 515, 557, 617, 713
BstNI CCWGG 2 cut(s) 110, 251
BstSCI CCNGG 3 cut(s) 108, 117, 249
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 4 cut(s) 125, 218, 340, 724
BstX2I RGATCY 1 cut(s) 673
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 2 cut(s) 8, 243
BtrI CACGTC 1 cut(s) 99
BtsCI GGATG 2 cut(s) 224, 717
BtsI GCAGTG 2 cut(s) 283, 732
BtsIMutI CAGTG 3 cut(s) 283, 323, 732
Cac8I GCNNGC 2 cut(s) 378, 429
CaiI CAGNNNCTG 1 cut(s) 138
CfoI GCGC 2 cut(s) 376, 541
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 2 cut(s) 90, 696
CsiI ACCWGGT 1 cut(s) 249
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 2 cut(s) 157, 295
DdeI CTNAG 4 cut(s) 309, 396, 407, 432
DpnI GATC 1 cut(s) 675
DpnII GATC 1 cut(s) 673
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
EciI GGCGGA 1 cut(s) 337
Ecl136II GAGCTC 2 cut(s) 406, 436
Eco130I CCWWGG 1 cut(s) 601
Eco24I GRGCYC 2 cut(s) 408, 438
Eco31I GGTCTC 1 cut(s) 164
Eco47III AGCGCT 1 cut(s) 375
Eco53kI GAGCTC 2 cut(s) 406, 436
Eco88I CYCGRG 1 cut(s) 300
EcoICRI GAGCTC 2 cut(s) 406, 436
EcoNI CCTNNNNNAGG 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 108, 249
EcoT14I CCWWGG 1 cut(s) 601
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 2 cut(s) 408, 438
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 2 cut(s) 160, 298
FaiI YATR 8 cut(s) 158, 296, 455, 483, 485, 594, 652, 671
FatI CATG 2 cut(s) 156, 294
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 9 cut(s) 139, 232, 235, 289, 306, 351, 354, 552, 738
FokI GGATG 2 cut(s) 231, 724
FriOI GRGCYC 2 cut(s) 408, 438
Fsp4HI GCNGC 9 cut(s) 139, 232, 235, 289, 306, 351, 354, 552, 738
FspBI CTAG 2 cut(s) 87, 185
GlaI GCGC 2 cut(s) 375, 540
GluI GCNGC 9 cut(s) 139, 232, 235, 289, 306, 351, 354, 552, 738
HaeII RGCGCY 2 cut(s) 377, 542
HaeIII GGCC 2 cut(s) 8, 243
HapII CCGG 3 cut(s) 118, 267, 584
HgaI GACGC 2 cut(s) 90, 696
HhaI GCGC 2 cut(s) 376, 541
Hin1II CATG 2 cut(s) 160, 298
Hin6I GCGC 2 cut(s) 374, 539
HinP1I GCGC 2 cut(s) 374, 539
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 4 cut(s) 344, 571, 625, 635
HpaII CCGG 3 cut(s) 118, 267, 584
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 103, 711
Hpy188III TCNNGA 2 cut(s) 300, 584
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 4 cut(s) 84, 103, 203, 690
HpyAV CCTTC 1 cut(s) 687
HpyCH4III ACNGT 2 cut(s) 199, 327
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 5 cut(s) 126, 160, 509, 611, 740
HpyF10VI GCNNNNNNNGC 6 cut(s) 240, 433, 515, 557, 617, 713
HpyF3I CTNAG 4 cut(s) 309, 396, 407, 432
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 2 cut(s) 160, 298
HspAI GCGC 2 cut(s) 374, 539
Kpn2I TCCGGA 1 cut(s) 583
Kzo9I GATC 1 cut(s) 673
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 5 cut(s) 135, 158, 193, 335, 695
Lsp1109I GCAGC 4 cut(s) 125, 218, 340, 724
LweI GCATC 2 cut(s) 538, 598
MabI ACCWGGT 1 cut(s) 249
MaeI CTAG 2 cut(s) 87, 185
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 281
MalI GATC 1 cut(s) 675
MboI GATC 1 cut(s) 673
MboII GAAGA 3 cut(s) 43, 430, 557
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 2 cut(s) 408, 438
MluCI AATT 5 cut(s) 418, 458, 468, 566, 629
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 2 cut(s) 57, 81
MnlI CCTC 6 cut(s) 27, 304, 326, 452, 580, 585
Mph1103I ATGCAT 1 cut(s) 613
MroI TCCGGA 1 cut(s) 583
MroXI GAANNNNTTC 1 cut(s) 529
MseI TTAA 3 cut(s) 383, 461, 748
MspA1I CMGCKG 3 cut(s) 231, 308, 353
MspI CCGG 3 cut(s) 118, 267, 584
MspR9I CCNGG 3 cut(s) 110, 119, 251
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 2 cut(s) 110, 251
MwoI GCNNNNNNNGC 6 cut(s) 240, 433, 515, 557, 617, 713
NciI CCSGG 1 cut(s) 119
NdeII GATC 1 cut(s) 673
NlaIII CATG 2 cut(s) 160, 298
NlaIV GGNNCC 3 cut(s) 154, 244, 292
NmuCI GTSAC 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 613
PaeR7I CTCGAG 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 443
PctI GAATGC 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 529
PfeI GAWTC 3 cut(s) 344, 571, 635
PflMI CCANNNNNTGG 1 cut(s) 473
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 9 cut(s) 140, 233, 236, 290, 307, 352, 355, 553, 739
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
Psp124BI GAGCTC 2 cut(s) 408, 438
Psp6I CCWGG 2 cut(s) 108, 249
PspGI CCWGG 2 cut(s) 108, 249
PspN4I GGNNCC 3 cut(s) 154, 244, 292
PspPI GGNCC 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 673
SacI GAGCTC 2 cut(s) 408, 438
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 3 cut(s) 383, 461, 748
SatI GCNGC 9 cut(s) 139, 232, 235, 289, 306, 351, 354, 552, 738
Sau3AI GATC 1 cut(s) 673
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 634
ScrFI CCNGG 3 cut(s) 110, 119, 251
SduI GDGCHC 2 cut(s) 408, 438
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 2 cut(s) 538, 598
SfcI CTRYAG 1 cut(s) 453
Sfr274I CTCGAG 1 cut(s) 300
SlaI CTCGAG 1 cut(s) 300
SmlI CTYRAG 3 cut(s) 167, 300, 722
SmoI CTYRAG 3 cut(s) 167, 300, 722
Sse9I AATT 5 cut(s) 418, 458, 468, 566, 629
SsiI CCGC 8 cut(s) 229, 234, 288, 306, 330, 348, 351, 552
SspMI CTAG 2 cut(s) 87, 185
SstI GAGCTC 2 cut(s) 408, 438
StyD4I CCNGG 3 cut(s) 108, 117, 249
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 2 cut(s) 199, 327
TaiI ACGT 1 cut(s) 101
TaqI TCGA 2 cut(s) 301, 685
TaqII GACCGA 1 cut(s) 269
TasI AATT 5 cut(s) 418, 458, 468, 566, 629
TauI GCSGC 5 cut(s) 237, 291, 308, 353, 554
TfiI GAWTC 3 cut(s) 344, 571, 635
Tru1I TTAA 3 cut(s) 383, 461, 748
Tru9I TTAA 3 cut(s) 383, 461, 748
TscAI CASTG 3 cut(s) 290, 330, 739
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 4 cut(s) 138, 231, 353, 737
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 43, 82, 470
TspRI CASTG 3 cut(s) 290, 330, 739
Van91I CCANNNNNTGG 1 cut(s) 473
XagI CCTNNNNNAGG 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 529
XspI CTAG 2 cut(s) 87, 185
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.