Rh7BG004600

tetratricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013286
Physical Location & Seq
Reverse (-)
280320 .. 282477
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG004600.1

Sequence Viewer

Length: 777 bp
ATGGAGGTTGTGTTTCCTCCACCTACAACGTCTAACAAGTCTCTCCCCATCTTTATTAATTCCAAGCCCACACCAAGACGGCGCTGTAGTATCATCATTTCCGAAATCCAGGAAATCCGGGTATGCACCAACCGGAGTTGCCGTAGACAAGGTTCCATGCAGACCCTTGAGACCATCACGGCCCTCGCTCCCCCCACAGTCGCCGTCAAGTCCTGCGGCTGTTTGAGCCGCTGCGGCAACGGCCCCAACCTCGTCGCGCTTCCAGCCGGCACTCTGGTCGGTCATTGCGGAACCAGGGCTCGAGCCGCCGAGGTCCTCGTGGCACTCTGCGGAGGAGCTTGGGATTCCGACGCTGCTGACAAGAGTTTGGAAGGGCTTGCGTTGAGGAATAAAGCTGAGATTGAGCTCAACAACAACAACAATTTCTCTCAGGCTGAGCTCTTCCTCTCACAGGCTATAGAATTAAGGCCAATTGGTGGCATCCATATTACATACAAGGACAGGTCTATTGCTAGATTAGCACTGGGAAATCATTCTGGGGCTCTTGAAGATGCCGCACAAGCTTTGGCATTAAATCCTCTTTATCCGGAGGCTTATATTTGCCAAGGTGATGCATTCTTGGCAATGAGTCATTTTGATTCAGCTCAGAAGTCATATTTGACAGCTCTACAGATAGATCCTTCTATTCGACGCTCCAAATCTTTCAAGGTATATTATAAGACCCGTATATCCATAATGTTAGGACGGACAAAGATTAAAGATCATCTTGGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0006457 GO:0008022 GO:0008150 GO:0009987 GO:0030544 GO:0031072 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

258

Amino Acids

27.97

Weight (kDa)

9.2

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17670 AT3G17670
fragaria_vesca FvH4_5g18270 FvH4_5g18270
malus_domestica MD06G1238300.v1.1
prunus_persica Prupe.5G242200_v2.0.a1 Prupe.5G242200_v2.0.a1
pyrus_communis pycom06g21380
rosa_chinensis RchiOBHm_Chr7g0177311
rosa_laevigata RLG00000005547
rosa_multiflora Rmu_sc0005310.1_g000006
rosa_roxburghii Rroxscaffold_3G00275950
rosa_rugosa Rorug06G0404800
rosa_samantha Rh7AG004700 Rh7BG004600 Rh7CG004500 Rh7DG004500
rosa_wichuraiana Rw7G000390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 1 cut(s) 145
AccII CGCG 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 7 cut(s) 216, 229, 234, 288, 306, 330, 555
AclWI GGATC 1 cut(s) 671
AfiI CCNNNNNNNGG 2 cut(s) 451, 476
AgsI TTSAA 2 cut(s) 548, 706
AjnI CCWGG 2 cut(s) 108, 293
AluBI AGCT 7 cut(s) 338, 395, 406, 439, 563, 644, 665
AluI AGCT 7 cut(s) 338, 395, 406, 439, 563, 644, 665
Alw21I GWGCWC 2 cut(s) 408, 441
Alw26I GTCTC 2 cut(s) 45, 164
AlwI GGATC 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 300
Aor13HI TCCGGA 1 cut(s) 586
AoxI GGCC 3 cut(s) 180, 241, 467
ApeKI GCWGC 2 cut(s) 231, 353
AseI ATTAAT 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 532
AspLEI GCGC 2 cut(s) 84, 259
AspS9I GGNCC 3 cut(s) 181, 242, 313
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 620
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 4 cut(s) 301, 408, 441, 544
BauI CACGAG 1 cut(s) 317
Bbv12I GWGCWC 2 cut(s) 408, 441
BbvI GCAGC 2 cut(s) 218, 340
BccI CCATC 2 cut(s) 56, 182
BceAI ACGGC 5 cut(s) 95, 126, 188, 195, 256
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BciT130I CCWGG 2 cut(s) 110, 295
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 45, 164
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 3 cut(s) 85, 456, 668
BfoI RGCGCY 1 cut(s) 85
BglI GCCNNNNNGGC 1 cut(s) 234
BisI GCNGC 7 cut(s) 217, 229, 232, 235, 306, 354, 555
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 7 cut(s) 218, 230, 233, 236, 307, 355, 556
Bme1390I CCNGG 3 cut(s) 110, 119, 295
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 3 cut(s) 181, 242, 313
BmiI GGNNCC 3 cut(s) 154, 244, 292
BmrFI CCNGG 3 cut(s) 110, 119, 295
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 3 cut(s) 489, 541, 601
BmuI ACTGGG 1 cut(s) 533
Bpu1102I GCTNAGC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 294, 309, 604
BsaWI WCCGGW 2 cut(s) 132, 586
BsaXI ACNNNNNCTCC 3 cut(s) 26, 127, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 476
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 528
Bse3DI GCAATG 2 cut(s) 283, 630
BseAI TCCGGA 1 cut(s) 586
BseBI CCWGG 2 cut(s) 110, 295
BseDI CCNNGG 3 cut(s) 294, 309, 604
BseGI GGATG 1 cut(s) 480
BseLI CCNNNNNNNGG 2 cut(s) 451, 476
BseMI GCAATG 2 cut(s) 283, 630
BseMII CTCAG 4 cut(s) 387, 426, 443, 659
BseNI ACTGG 1 cut(s) 528
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 2 cut(s) 218, 340
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 3 cut(s) 182, 243, 469
BsiHKAI GWGCWC 2 cut(s) 408, 441
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 4 cut(s) 118, 133, 267, 587
BslI CCNNNNNNNGG 2 cut(s) 451, 476
BsmAI GTCTC 2 cut(s) 45, 164
BsmI GAATGC 1 cut(s) 614
BsnI GGCC 3 cut(s) 182, 243, 469
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 4 cut(s) 301, 408, 441, 544
Bsp13I TCCGGA 1 cut(s) 586
Bsp143I GATC 2 cut(s) 676, 760
Bsp1720I GCTNAGC 1 cut(s) 435
BspACI CCGC 7 cut(s) 216, 229, 234, 288, 306, 330, 555
BspANI GGCC 3 cut(s) 182, 243, 469
BspCNI CTCAG 4 cut(s) 388, 427, 442, 658
BspEI TCCGGA 1 cut(s) 586
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 3 cut(s) 154, 244, 292
BspPI GGATC 1 cut(s) 671
BspQI GCTCTTC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 283, 630
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 528
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 294, 309, 604
BssMI GATC 2 cut(s) 676, 760
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 604
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 2 cut(s) 110, 295
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 446
BstC8I GCNNGC 2 cut(s) 268, 378
BstDEI CTNAG 4 cut(s) 396, 429, 435, 645
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 1 cut(s) 480
BstFNI CGCG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 2 cut(s) 84, 259
BstKTI GATC 2 cut(s) 679, 763
BstMAI GTCTC 2 cut(s) 45, 164
BstMBI GATC 2 cut(s) 676, 760
BstMWI GCNNNNNNNGC 8 cut(s) 225, 234, 240, 263, 305, 518, 560, 620
BstNI CCWGG 2 cut(s) 110, 295
BstSCI CCNGG 3 cut(s) 108, 117, 293
BstSFI CTRYAG 3 cut(s) 85, 456, 668
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 218, 340
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 3 cut(s) 182, 243, 469
BtsCI GGATG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 268, 378
CfoI GCGC 2 cut(s) 84, 259
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 3 cut(s) 181, 242, 313
CseI GACGC 2 cut(s) 359, 699
CviAII CATG 1 cut(s) 157
DdeI CTNAG 4 cut(s) 396, 429, 435, 645
DpnI GATC 2 cut(s) 678, 762
DpnII GATC 2 cut(s) 676, 760
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Ecl136II GAGCTC 2 cut(s) 406, 439
Eco130I CCWWGG 1 cut(s) 604
Eco24I GRGCYC 4 cut(s) 301, 408, 441, 544
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 2 cut(s) 406, 439
Eco88I CYCGRG 1 cut(s) 300
EcoICRI GAGCTC 2 cut(s) 406, 439
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 108, 293
EcoT14I CCWWGG 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 616
EcoT38I GRGCYC 4 cut(s) 301, 408, 441, 544
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 1 cut(s) 160
FalI AAGNNNNNCTT 1 cut(s) 750
FatI CATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 7 cut(s) 217, 229, 232, 235, 306, 354, 555
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 4 cut(s) 301, 408, 441, 544
Fsp4HI GCNGC 7 cut(s) 217, 229, 232, 235, 306, 354, 555
FspBI CTAG 1 cut(s) 513
GlaI GCGC 2 cut(s) 83, 258
GluI GCNGC 7 cut(s) 217, 229, 232, 235, 306, 354, 555
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 3 cut(s) 182, 243, 469
HapII CCGG 4 cut(s) 118, 133, 267, 587
HgaI GACGC 2 cut(s) 359, 699
HhaI GCGC 2 cut(s) 84, 259
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 2 cut(s) 82, 257
HinP1I GCGC 2 cut(s) 82, 257
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 3 cut(s) 344, 628, 638
HpaII CCGG 4 cut(s) 118, 133, 267, 587
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 3 cut(s) 103, 349, 648
Hpy188III TCNNGA 2 cut(s) 545, 587
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 3 cut(s) 257, 353, 693
HpyAV CCTTC 2 cut(s) 365, 690
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 3 cut(s) 126, 160, 614
HpyF10VI GCNNNNNNNGC 8 cut(s) 225, 234, 240, 263, 305, 518, 560, 620
HpyF3I CTNAG 4 cut(s) 396, 429, 435, 645
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 2 cut(s) 82, 257
Kpn2I TCCGGA 1 cut(s) 586
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 676, 760
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 3 cut(s) 193, 335, 698
Lsp1109I GCAGC 2 cut(s) 218, 340
LweI GCATC 3 cut(s) 489, 541, 601
MaeI CTAG 1 cut(s) 513
MaeII ACGT 1 cut(s) 29
MalI GATC 2 cut(s) 678, 762
MboI GATC 2 cut(s) 676, 760
MboII GAAGA 2 cut(s) 433, 560
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 4 cut(s) 301, 408, 441, 544
MluCI AATT 4 cut(s) 58, 421, 461, 471
MlyI GAGTC 1 cut(s) 637
MmeI TCCRAC 1 cut(s) 372
Mph1103I ATGCAT 1 cut(s) 616
MroI TCCGGA 1 cut(s) 586
MroNI GCCGGC 1 cut(s) 266
MroXI GAANNNNTTC 1 cut(s) 532
MseI TTAA 4 cut(s) 57, 464, 572, 756
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 4 cut(s) 118, 133, 267, 587
MspR9I CCNGG 3 cut(s) 110, 119, 295
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 614
MvaI CCWGG 2 cut(s) 110, 295
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 8 cut(s) 225, 234, 240, 263, 305, 518, 560, 620
NaeI GCCGGC 1 cut(s) 268
NciI CCSGG 1 cut(s) 119
NdeII GATC 2 cut(s) 676, 760
NgoMIV GCCGGC 1 cut(s) 266
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 3 cut(s) 154, 244, 292
NmeAIII GCCGAG 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 616
PaeR7I CTCGAG 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 446
PctI GAATGC 1 cut(s) 614
PdiI GCCGGC 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 532
PfeI GAWTC 2 cut(s) 344, 638
PflMI CCANNNNNTGG 1 cut(s) 476
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 7 cut(s) 218, 230, 233, 236, 307, 355, 556
PleI GAGTC 1 cut(s) 636
PpsI GAGTC 1 cut(s) 636
PpuMI RGGWCCY 1 cut(s) 313
PshBI ATTAAT 1 cut(s) 57
PsiI TTATAA 1 cut(s) 717
Psp124BI GAGCTC 2 cut(s) 408, 441
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 2 cut(s) 108, 293
PspGI CCWGG 2 cut(s) 108, 293
PspN4I GGNNCC 3 cut(s) 154, 244, 292
PspPI GGNCC 3 cut(s) 181, 242, 313
PspPPI RGGWCCY 1 cut(s) 313
PspXI VCTCGAGB 1 cut(s) 300
PsrI GAACNNNNNNTAC 2 cut(s) 136, 168
PsuI RGATCY 1 cut(s) 676
SacI GAGCTC 2 cut(s) 408, 441
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 4 cut(s) 57, 464, 572, 756
SatI GCNGC 7 cut(s) 217, 229, 232, 235, 306, 354, 555
Sau3AI GATC 2 cut(s) 676, 760
Sau96I GGNCC 3 cut(s) 181, 242, 313
SchI GAGTC 1 cut(s) 637
ScrFI CCNGG 3 cut(s) 110, 119, 295
SduI GDGCHC 4 cut(s) 301, 408, 441, 544
SfaNI GCATC 3 cut(s) 489, 541, 601
SfcI CTRYAG 3 cut(s) 85, 456, 668
Sfr274I CTCGAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 313
SlaI CTCGAG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 167, 300
SmoI CTYRAG 2 cut(s) 167, 300
Sse9I AATT 4 cut(s) 58, 421, 461, 471
SsiI CCGC 7 cut(s) 216, 229, 234, 288, 306, 330, 555
SspMI CTAG 1 cut(s) 513
SstI GAGCTC 2 cut(s) 408, 441
StyD4I CCNGG 3 cut(s) 108, 117, 293
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 301, 688
TaqII GACCGA 1 cut(s) 269
TasI AATT 4 cut(s) 58, 421, 461, 471
TauI GCSGC 5 cut(s) 219, 231, 237, 308, 557
TfiI GAWTC 2 cut(s) 344, 638
Tru1I TTAA 4 cut(s) 57, 464, 572, 756
Tru9I TTAA 4 cut(s) 57, 464, 572, 756
TscAI CASTG 1 cut(s) 528
TseI GCWGC 2 cut(s) 231, 353
TspDTI ATGAA 1 cut(s) 762
TspGWI ACGGA 1 cut(s) 760
TspRI CASTG 1 cut(s) 528
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 313
VspI ATTAAT 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 449
XhoI CTCGAG 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 532
XspI CTAG 1 cut(s) 513
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.