MD06G1238300.v1.1

tetratricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013286
Physical Location & Seq
Forward (+)
36920650 .. 36922823
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1238300.v1.1.491

Sequence Viewer

Length: 792 bp
ATGGATGTGGTGTTGCCTCTACCTGGAGCTACTGCCTCCGCCGCCTCTAGATCTTATTCCAGGCGTGTGCGACGCCGCATCGTGGTCAAAGATTGTCAGTCGGCAGAGGACGTCCAGGAAATTAGGGTGTGCACCAACCGCACTTGCCGCAGACAAGGTTCGATGCAAATCCTTGAGACCCTCACCGATCTCGCCCCTCCTAACGTCTCCGTCAAATCCTCCGGCTGCTTGGGCCGCTGTGGGGCAGGCCCCAACCTCGTGGCCCTTCCCGCCGCCACTTTGGTCGCTCACTGCGGCACCACCGCTCGAGCGGCCGAGGTCCTCGTGGCACTAGTTCTGCCACGGGGAAGAGAAGGTGATGGTGGTGGTGGTTCGAATTGGGACGCTATTGTTAACAAGAGTTTGGAAGCGCTGGCGTTGAGAAACAAGGCGCGAAGTGAAGTAGTTGACAAGAACAATTTCTCTCAGGCTGAGCTCTTCCTCTCACAGGCTATAGAATTAGGACCAATTGGGGGTGTTCATATTATGTATAAAGAGAGGTCCCTTGCAAGATTAGCATCCGGCAATTGTTCCGGGGCTCTTGAAGATGCCGCTCAAGCTTTGGCTTTGCATCCTCTCTATCCTGAGGCTTATATTTGCCAAGGTGATGCATTCTTGGCCATGAACAAATTTAATTCCGCGCAGAGATCATATTCGACAGCTTTACAGATGGATCCTTCTCTTCGACGTTCCAAATCTTTCAAGGCTAGGATTGCAAACCTTGAGAAACTCACTGCCGTAAATCTGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0006457 GO:0008022 GO:0008150 GO:0009987 GO:0030544 GO:0031072 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

264

Amino Acids

28.08

Weight (kDa)

9.32

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17670 AT3G17670
fragaria_vesca FvH4_5g18270 FvH4_5g18270
malus_domestica MD06G1238300.v1.1
prunus_persica Prupe.5G242200_v2.0.a1 Prupe.5G242200_v2.0.a1
pyrus_communis pycom06g21380
rosa_chinensis RchiOBHm_Chr7g0177311
rosa_laevigata RLG00000005547
rosa_multiflora Rmu_sc0005310.1_g000006
rosa_roxburghii Rroxscaffold_3G00275950
rosa_rugosa Rorug06G0404800
rosa_samantha Rh7AG004700 Rh7BG004600 Rh7CG004500 Rh7DG004500
rosa_wichuraiana Rw7G000390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 296
AccBSI CCGCTC 3 cut(s) 305, 311, 593
AccII CGCG 2 cut(s) 433, 680
AclWI GGATC 2 cut(s) 707, 720
AcoI YGGCCR 2 cut(s) 312, 657
AcsI RAATTY 1 cut(s) 668
AcyI GRCGYC 2 cut(s) 73, 111
AfeI AGCGCT 1 cut(s) 411
AfiI CCNNNNNNNGG 5 cut(s) 23, 82, 241, 487, 512
AgsI TTSAA 2 cut(s) 584, 742
AhlI ACTAGT 1 cut(s) 331
AjnI CCWGG 3 cut(s) 22, 59, 114
AluBI AGCT 4 cut(s) 29, 475, 599, 701
AluI AGCT 4 cut(s) 29, 475, 599, 701
Alw21I GWGCWC 2 cut(s) 134, 477
Alw26I GTCTC 2 cut(s) 170, 211
Alw44I GTGCAC 1 cut(s) 130
AlwI GGATC 2 cut(s) 707, 720
Ama87I CYCGRG 1 cut(s) 306
Aor51HI AGCGCT 1 cut(s) 411
AoxI GGCC 5 cut(s) 232, 247, 261, 312, 657
ApaLI GTGCAC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 668
Asp700I GAANNNNTTC 1 cut(s) 458
AspLEI GCGC 3 cut(s) 412, 433, 682
AspS9I GGNCC 6 cut(s) 232, 248, 262, 319, 503, 540
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 3 cut(s) 175, 368, 656
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 3 cut(s) 319, 503, 540
AxyI CCTNAGG 1 cut(s) 624
BaeGI GKGCMC 1 cut(s) 134
BalI TGGCCA 1 cut(s) 659
BamHI GGATCC 1 cut(s) 712
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 2 cut(s) 477, 580
BauI CACGAG 2 cut(s) 257, 323
Bbv12I GWGCWC 2 cut(s) 134, 477
BbvI GCAGC 1 cut(s) 212
BccI CCATC 2 cut(s) 353, 703
BceAI ACGGC 1 cut(s) 761
BciT130I CCWGG 3 cut(s) 24, 61, 116
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 2 cut(s) 170, 211
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 3 cut(s) 48, 332, 747
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 413
BglII AGATCT 1 cut(s) 50
BisI GCNGC 9 cut(s) 42, 76, 148, 226, 235, 273, 295, 312, 591
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 9 cut(s) 43, 77, 149, 227, 236, 274, 296, 313, 592
Bme1390I CCNGG 4 cut(s) 24, 61, 116, 574
Bme18I GGWCC 3 cut(s) 319, 503, 540
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 6 cut(s) 232, 248, 262, 319, 503, 540
BmiI GGNNCC 4 cut(s) 250, 298, 542, 714
BmrFI CCNGG 4 cut(s) 24, 61, 116, 574
BmsI GCATC 6 cut(s) 87, 153, 566, 577, 619, 637
BpmI CTGGAG 1 cut(s) 45
Bpu1102I GCTNAGC 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 3 cut(s) 194, 579, 782
BpuMI CCSGG 1 cut(s) 574
BsaBI GATNNNNATC 2 cut(s) 167, 556
BsaHI GRCGYC 2 cut(s) 73, 111
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 315, 341, 573, 640
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 82, 241, 487, 512
Bse21I CCTNAGG 1 cut(s) 624
Bse8I GATNNNNATC 2 cut(s) 167, 556
BseBI CCWGG 3 cut(s) 24, 61, 116
BseDI CCNNGG 4 cut(s) 315, 341, 573, 640
BseGI GGATG 3 cut(s) 10, 557, 610
BseJI GATNNNNATC 2 cut(s) 167, 556
BseLI CCNNNNNNNGG 5 cut(s) 23, 82, 241, 487, 512
BseMII CTCAG 3 cut(s) 462, 479, 615
BseSI GKGCMC 1 cut(s) 134
BseX3I CGGCCG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 212
Bsh1236I CGCG 2 cut(s) 433, 680
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 5 cut(s) 234, 249, 263, 314, 659
BshNI GGYRCC 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 134, 477
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 3 cut(s) 222, 561, 573
BslFI GGGAC 2 cut(s) 395, 526
BslI CCNNNNNNNGG 5 cut(s) 23, 82, 241, 487, 512
BsmAI GTCTC 2 cut(s) 170, 211
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 395, 526
BsmI GAATGC 1 cut(s) 650
BsnI GGCC 5 cut(s) 234, 249, 263, 314, 659
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 134, 477, 580
Bsp143I GATC 4 cut(s) 50, 187, 686, 712
Bsp1720I GCTNAGC 1 cut(s) 471
BspANI GGCC 5 cut(s) 234, 249, 263, 314, 659
BspCNI CTCAG 3 cut(s) 463, 478, 616
BspFNI CGCG 2 cut(s) 433, 680
BspLI GGNNCC 4 cut(s) 250, 298, 542, 714
BspPI GGATC 2 cut(s) 707, 720
BspQI GCTCTTC 1 cut(s) 482
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 170
BsrBI CCGCTC 3 cut(s) 305, 311, 593
BssECI CCNNGG 4 cut(s) 315, 341, 573, 640
BssMI GATC 4 cut(s) 50, 187, 686, 712
BssNI GRCGYC 2 cut(s) 73, 111
BssSI CACGAG 2 cut(s) 257, 323
BssT1I CCWWGG 1 cut(s) 640
Bst2BI CACGAG 2 cut(s) 257, 323
Bst2UI CCWGG 3 cut(s) 24, 61, 116
Bst6I CTCTTC 3 cut(s) 343, 482, 726
BstACI GRCGYC 2 cut(s) 73, 111
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 247, 414
BstDEI CTNAG 3 cut(s) 465, 471, 624
BstDSI CCRYGG 1 cut(s) 341
BstENI CCTNNNNNAGG 1 cut(s) 485
BstF5I GGATG 3 cut(s) 10, 557, 610
BstFNI CGCG 2 cut(s) 433, 680
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 3 cut(s) 412, 433, 682
BstKTI GATC 4 cut(s) 53, 190, 689, 715
BstMAI GTCTC 2 cut(s) 170, 211
BstMBI GATC 4 cut(s) 50, 187, 686, 712
BstMCI CGRYCG 1 cut(s) 315
BstNI CCWGG 3 cut(s) 24, 61, 116
BstSCI CCNGG 4 cut(s) 22, 59, 114, 572
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 134
BstUI CGCG 2 cut(s) 433, 680
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 2 cut(s) 50, 712
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 2 cut(s) 50, 712
BstZI CGGCCG 1 cut(s) 312
Bsu36I CCTNAGG 1 cut(s) 624
BsuRI GGCC 5 cut(s) 234, 249, 263, 314, 659
BtgI CCRYGG 1 cut(s) 341
BtsCI GGATG 3 cut(s) 10, 557, 610
BtsI GCAGTG 2 cut(s) 289, 771
BtsIMutI CAGTG 2 cut(s) 289, 771
Cac8I GCNNGC 2 cut(s) 247, 414
CfoI GCGC 3 cut(s) 412, 433, 682
Cfr13I GGNCC 6 cut(s) 232, 248, 262, 319, 503, 540
CseI GACGC 2 cut(s) 81, 392
CviAII CATG 1 cut(s) 661
DdeI CTNAG 3 cut(s) 465, 471, 624
DpnI GATC 4 cut(s) 52, 189, 688, 714
DpnII GATC 4 cut(s) 50, 187, 686, 712
EaeI YGGCCR 2 cut(s) 312, 657
EagI CGGCCG 1 cut(s) 312
Eam1104I CTCTTC 3 cut(s) 343, 482, 726
EarI CTCTTC 3 cut(s) 343, 482, 726
EciI GGCGGA 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 475
EclXI CGGCCG 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 640
Eco24I GRGCYC 2 cut(s) 477, 580
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 3 cut(s) 319, 503, 540
Eco47III AGCGCT 1 cut(s) 411
Eco52I CGGCCG 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 475
Eco81I CCTNAGG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 475
EcoNI CCTNNNNNAGG 1 cut(s) 485
EcoO109I RGGNCCY 3 cut(s) 248, 319, 540
EcoRII CCWGG 3 cut(s) 22, 59, 114
EcoT14I CCWWGG 1 cut(s) 640
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 2 cut(s) 477, 580
ErhI CCWWGG 1 cut(s) 640
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 1 cut(s) 664
FaiI YATR 7 cut(s) 494, 522, 527, 531, 633, 662, 691
FaqI GGGAC 2 cut(s) 395, 526
FatI CATG 1 cut(s) 660
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 9 cut(s) 42, 76, 148, 226, 235, 273, 295, 312, 591
FokI GGATG 3 cut(s) 17, 544, 597
FriOI GRGCYC 2 cut(s) 477, 580
Fsp4HI GCNGC 9 cut(s) 42, 76, 148, 226, 235, 273, 295, 312, 591
FspBI CTAG 3 cut(s) 48, 332, 747
GlaI GCGC 3 cut(s) 411, 432, 681
GluI GCNGC 9 cut(s) 42, 76, 148, 226, 235, 273, 295, 312, 591
GsuI CTGGAG 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 5 cut(s) 234, 249, 263, 314, 659
HapII CCGG 3 cut(s) 222, 561, 573
HgaI GACGC 2 cut(s) 81, 392
HhaI GCGC 3 cut(s) 412, 433, 682
Hin1I GRCGYC 2 cut(s) 73, 111
Hin1II CATG 1 cut(s) 664
Hin6I GCGC 3 cut(s) 410, 431, 680
HinP1I GCGC 3 cut(s) 410, 431, 680
HincII GTYRAC 2 cut(s) 394, 448
HindII GTYRAC 2 cut(s) 394, 448
HindIII AAGCTT 1 cut(s) 597
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 3 cut(s) 222, 561, 573
HphI GGTGA 3 cut(s) 175, 368, 656
Hpy166II GTNNAC 3 cut(s) 132, 394, 448
Hpy188III TCNNGA 3 cut(s) 48, 581, 623
Hpy8I GTNNAC 3 cut(s) 132, 394, 448
Hpy99I CGWCG 2 cut(s) 75, 729
HpyAV CCTTC 3 cut(s) 275, 347, 726
HpyCH4IV ACGT 3 cut(s) 111, 204, 727
HpyCH4V TGCA 6 cut(s) 132, 166, 548, 610, 650, 755
HpyF3I CTNAG 3 cut(s) 465, 471, 624
HpySE526I ACGT 3 cut(s) 111, 204, 727
Hsp92I GRCGYC 2 cut(s) 73, 111
Hsp92II CATG 1 cut(s) 664
HspAI GCGC 3 cut(s) 410, 431, 680
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 4 cut(s) 50, 187, 686, 712
LguI GCTCTTC 1 cut(s) 482
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 6 cut(s) 87, 153, 566, 577, 619, 637
MaeI CTAG 3 cut(s) 48, 332, 747
MaeII ACGT 3 cut(s) 111, 204, 727
MalI GATC 4 cut(s) 52, 189, 688, 714
MbiI CCGCTC 3 cut(s) 305, 311, 593
MboI GATC 4 cut(s) 50, 187, 686, 712
MboII GAAGA 4 cut(s) 360, 469, 596, 713
MfeI CAATTG 2 cut(s) 507, 565
MflI RGATCY 2 cut(s) 50, 712
MhlI GDGCHC 3 cut(s) 134, 477, 580
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 8 cut(s) 120, 376, 457, 497, 507, 565, 668, 673
MluNI TGGCCA 1 cut(s) 659
Mox20I TGGCCA 1 cut(s) 659
Mph1103I ATGCAT 1 cut(s) 652
MroXI GAANNNNTTC 1 cut(s) 458
MscI TGGCCA 1 cut(s) 659
MseI TTAA 3 cut(s) 393, 672, 790
Msp20I TGGCCA 1 cut(s) 659
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 3 cut(s) 222, 561, 573
MspR9I CCNGG 4 cut(s) 24, 61, 116, 574
MunI CAATTG 2 cut(s) 507, 565
Mva1269I GAATGC 1 cut(s) 650
MvaI CCWGG 3 cut(s) 24, 61, 116
MvnI CGCG 2 cut(s) 433, 680
NciI CCSGG 1 cut(s) 574
NdeII GATC 4 cut(s) 50, 187, 686, 712
NlaIII CATG 1 cut(s) 664
NlaIV GGNNCC 4 cut(s) 250, 298, 542, 714
NmeAIII GCCGAG 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 652
NspV TTCGAA 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 482
PctI GAATGC 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 458
PfoI TCCNGGA 1 cut(s) 114
PkrI GCNGC 9 cut(s) 43, 77, 149, 227, 236, 274, 296, 313, 592
PpuMI RGGWCCY 2 cut(s) 319, 540
Psp124BI GAGCTC 1 cut(s) 477
Psp5II RGGWCCY 2 cut(s) 319, 540
Psp6I CCWGG 3 cut(s) 22, 59, 114
PspGI CCWGG 3 cut(s) 22, 59, 114
PspN4I GGNNCC 4 cut(s) 250, 298, 542, 714
PspPI GGNCC 6 cut(s) 232, 248, 262, 319, 503, 540
PspPPI RGGWCCY 2 cut(s) 319, 540
PspXI VCTCGAGB 1 cut(s) 306
PsuI RGATCY 2 cut(s) 50, 712
SacI GAGCTC 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 482
SaqAI TTAA 3 cut(s) 393, 672, 790
SatI GCNGC 9 cut(s) 42, 76, 148, 226, 235, 273, 295, 312, 591
Sau3AI GATC 4 cut(s) 50, 187, 686, 712
Sau96I GGNCC 6 cut(s) 232, 248, 262, 319, 503, 540
ScrFI CCNGG 4 cut(s) 24, 61, 116, 574
SduI GDGCHC 3 cut(s) 134, 477, 580
SfaNI GCATC 6 cut(s) 87, 153, 566, 577, 619, 637
SfcI CTRYAG 1 cut(s) 492
Sfr274I CTCGAG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 374
SinI GGWCC 3 cut(s) 319, 503, 540
SlaI CTCGAG 1 cut(s) 306
SmlI CTYRAG 4 cut(s) 173, 306, 594, 761
SmoI CTYRAG 4 cut(s) 173, 306, 594, 761
SpeI ACTAGT 1 cut(s) 331
Sse9I AATT 8 cut(s) 120, 376, 457, 497, 507, 565, 668, 673
SspMI CTAG 3 cut(s) 48, 332, 747
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 4 cut(s) 22, 59, 114, 572
StyI CCWWGG 1 cut(s) 640
TaiI ACGT 3 cut(s) 114, 207, 730
TaqI TCGA 5 cut(s) 161, 307, 374, 695, 724
TasI AATT 8 cut(s) 120, 376, 457, 497, 507, 565, 668, 673
TauI GCSGC 8 cut(s) 44, 78, 150, 237, 275, 297, 314, 593
Tru1I TTAA 3 cut(s) 393, 672, 790
Tru9I TTAA 3 cut(s) 393, 672, 790
TscAI CASTG 2 cut(s) 296, 778
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 2 cut(s) 509, 677
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 2 cut(s) 296, 778
VneI GTGCAC 1 cut(s) 130
VpaK11BI GGWCC 3 cut(s) 319, 503, 540
XagI CCTNNNNNAGG 1 cut(s) 485
XapI RAATTY 1 cut(s) 668
XbaI TCTAGA 1 cut(s) 47
XhoI CTCGAG 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 3 cut(s) 48, 332, 747
ZraI GACGTC 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.