Prupe.5G242200_v2.0.a1

tetratricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013286
Physical Location & Seq
Forward (+)
18222196 .. 18224791
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G242200.2

Sequence Viewer

Length: 885 bp
ATGGAGGTGGTGGTGTTACCTCTACCTGGTTCCGGATCCAATAACAAGTCCCTCTGCGGCCTCTCCTCCTCCACCGCCGCCGCCACATCATATTTTAGACGACGCCGTATTGTCGCCATCACCAATTCCACCATCAACGGTTCTCACTCTTCTTCATCAGCGGAGGCAGAGGAGGACATCCAGATTAAGGAGATCAGGGTGTGCACCAACCGGACTTGCCGTAGACAAGGTTCCTTTCAAACCCTTGACACTCTCACCGCTCTCGCGCCCTCCAACGTCGCAGTCAAGTCCTCCGGCTGCTTGGGCCGCTGCGGCGCCGGCCCCAACCTCGTCGCGCTGCCTGCCGCCACTTTGGTCGCTCACTGCGGGACCACAGCTCGAGCCGTGGAGGTCCTCGTGGCACTAGTACTACTCAGCCGCCGACGAGGAGGAGGTGTTTCGAATTCGGACGGTGCTAATGCTAATAAGAACATTGAAACAATTGCAAACAAGAGTTTGGAAGCGCTTGCGTTGAGAAACAAGGCTCGGAATGAGCTTCTACACAACAACAATTTCTCCCAGGCTGAATTCTTCCTCTCTCAGGCTATAGAATTAAAACCAATTGGTGGTATCCATATTATGTATAAAGACAGGTCCCTTGCAAGACTGGCATTGGGCAATTATTCCGGGGCTCTTGAAGATGCTGCACAAGCTTTGGCTTTAAATCCTCTCTATCCTGAGGCTTACATTTGCCAAGGTGATGCATTCTTGGCTCTGAACCAATTTCAATCTGCTCATAACTCATATATGGCGTCTTTAGAGATAGATCCTTCTCTTCGACGTTCCAAATCTTTCAAGGCTCGGATTGCAAACCTTGAGAAACTCACCACTGGAAATATGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0006457 GO:0008022 GO:0008150 GO:0009987 GO:0030544 GO:0031072 GO:0051087
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

295

Amino Acids

31.31

Weight (kDa)

9.35

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17670 AT3G17670
fragaria_vesca FvH4_5g18270 FvH4_5g18270
malus_domestica MD06G1238300.v1.1
prunus_persica Prupe.5G242200_v2.0.a1 Prupe.5G242200_v2.0.a1
pyrus_communis pycom06g21380
rosa_chinensis RchiOBHm_Chr7g0177311
rosa_laevigata RLG00000005547
rosa_multiflora Rmu_sc0005310.1_g000006
rosa_roxburghii Rroxscaffold_3G00275950
rosa_rugosa Rorug06G0404800
rosa_samantha Rh7AG004700 Rh7BG004600 Rh7CG004500 Rh7DG004500
rosa_wichuraiana Rw7G000390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AccB7I CCANNNNNTGG 1 cut(s) 605
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 223
AccII CGCG 2 cut(s) 266, 335
AccIII TCCGGA 1 cut(s) 32
AclWI GGATC 3 cut(s) 30, 43, 800
AcsI RAATTY 2 cut(s) 442, 566
AcyI GRCGYC 3 cut(s) 103, 315, 791
AfaI GTAC 1 cut(s) 408
AfeI AGCGCT 1 cut(s) 504
AfiI CCNNNNNNNGG 5 cut(s) 26, 32, 187, 580, 605
AgsI TTSAA 5 cut(s) 239, 476, 677, 767, 835
AhlI ACTAGT 1 cut(s) 403
AjnI CCWGG 2 cut(s) 25, 558
AluBI AGCT 3 cut(s) 377, 535, 692
AluI AGCT 3 cut(s) 377, 535, 692
Alw21I GWGCWC 1 cut(s) 206
Alw44I GTGCAC 1 cut(s) 202
AlwI GGATC 3 cut(s) 30, 43, 800
Ama87I CYCGRG 1 cut(s) 378
Aor13HI TCCGGA 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 504
AoxI GGCC 3 cut(s) 58, 304, 319
ApaLI GTGCAC 1 cut(s) 202
ApeKI GCWGC 4 cut(s) 297, 309, 337, 683
ApoI RAATTY 2 cut(s) 442, 566
AspLEI GCGC 4 cut(s) 268, 317, 337, 505
AspS9I GGNCC 5 cut(s) 304, 320, 369, 391, 633
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 4 cut(s) 112, 247, 749, 856
AsuII TTCGAA 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 378
AvaII GGWCC 3 cut(s) 369, 391, 633
AxyI CCTNAGG 1 cut(s) 717
BaeGI GKGCMC 1 cut(s) 206
BamHI GGATCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 673
BauI CACGAG 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 4 cut(s) 284, 296, 324, 670
BccI CCATC 2 cut(s) 125, 140
BceAI ACGGC 3 cut(s) 90, 204, 368
BciT130I CCWGG 2 cut(s) 27, 560
BciVI GTATCC 1 cut(s) 620
BcnI CCSGG 1 cut(s) 667
BcuI ACTAGT 1 cut(s) 403
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 585
BfoI RGCGCY 2 cut(s) 318, 506
BfuI GTATCC 1 cut(s) 620
BglI GCCNNNNNGGC 1 cut(s) 312
BmcAI AGTACT 1 cut(s) 408
Bme1390I CCNGG 3 cut(s) 27, 560, 667
Bme18I GGWCC 3 cut(s) 369, 391, 633
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 5 cut(s) 304, 320, 369, 391, 633
BmiI GGNNCC 7 cut(s) 31, 37, 232, 316, 322, 370, 635
BmrFI CCNGG 3 cut(s) 27, 560, 667
BmsI GCATC 2 cut(s) 670, 730
Bpu14I TTCGAA 1 cut(s) 440
BpuEI CTTGAG 1 cut(s) 875
BpuMI CCSGG 1 cut(s) 667
BsaHI GRCGYC 3 cut(s) 103, 315, 791
BsaJI CCNNGG 4 cut(s) 384, 558, 666, 733
BsaWI WCCGGW 2 cut(s) 32, 210
BsaXI ACNNNNNCTCC 4 cut(s) 420, 450, 539, 569
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 32, 187, 580, 605
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 651, 874
Bse21I CCTNAGG 1 cut(s) 717
BseAI TCCGGA 1 cut(s) 32
BseBI CCWGG 2 cut(s) 27, 560
BseDI CCNNGG 4 cut(s) 384, 558, 666, 733
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 5 cut(s) 26, 32, 187, 580, 605
BseMII CTCAG 3 cut(s) 427, 593, 708
BseNI ACTGG 2 cut(s) 651, 874
BseRI GAGGAG 5 cut(s) 55, 58, 185, 441, 444
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 4 cut(s) 284, 296, 324, 670
BsgI GTGCAG 1 cut(s) 669
Bsh1236I CGCG 2 cut(s) 266, 335
BshFI GGCC 3 cut(s) 60, 306, 321
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 5 cut(s) 33, 211, 294, 318, 666
BslFI GGGAC 3 cut(s) 34, 382, 619
BslI CCNNNNNNNGG 5 cut(s) 26, 32, 187, 580, 605
BsmFI GGGAC 3 cut(s) 34, 382, 619
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 3 cut(s) 60, 306, 321
BsoBI CYCGRG 1 cut(s) 378
Bsp119I TTCGAA 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 206, 673
Bsp13I TCCGGA 1 cut(s) 32
Bsp143I GATC 3 cut(s) 35, 192, 805
BspANI GGCC 3 cut(s) 60, 306, 321
BspCNI CTCAG 3 cut(s) 426, 592, 709
BspEI TCCGGA 1 cut(s) 32
BspFNI CGCG 2 cut(s) 266, 335
BspLI GGNNCC 7 cut(s) 31, 37, 232, 316, 322, 370, 635
BspPI GGATC 3 cut(s) 30, 43, 800
BspT104I TTCGAA 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 314
BsrBI CCGCTC 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 2 cut(s) 651, 874
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 4 cut(s) 384, 558, 666, 733
BssMI GATC 3 cut(s) 35, 192, 805
BssNI GRCGYC 3 cut(s) 103, 315, 791
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 733
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 2 cut(s) 27, 560
Bst4CI ACNGT 2 cut(s) 140, 452
Bst6I CTCTTC 2 cut(s) 154, 819
BstACI GRCGYC 3 cut(s) 103, 315, 791
BstBI TTCGAA 1 cut(s) 440
BstC8I GCNNGC 3 cut(s) 319, 342, 507
BstDEI CTNAG 3 cut(s) 413, 579, 717
BstDSI CCRYGG 1 cut(s) 384
BstENI CCTNNNNNAGG 1 cut(s) 578
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 2 cut(s) 266, 335
BstH2I RGCGCY 2 cut(s) 318, 506
BstHHI GCGC 4 cut(s) 268, 317, 337, 505
BstKTI GATC 3 cut(s) 38, 195, 808
BstMBI GATC 3 cut(s) 35, 192, 805
BstMWI GCNNNNNNNGC 9 cut(s) 303, 306, 312, 318, 341, 647, 689, 749, 845
BstNI CCWGG 2 cut(s) 27, 560
BstSCI CCNGG 3 cut(s) 25, 558, 665
BstSFI CTRYAG 1 cut(s) 585
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 2 cut(s) 266, 335
BstV1I GCAGC 4 cut(s) 284, 296, 324, 670
BstX2I RGATCY 2 cut(s) 35, 805
BstYI RGATCY 2 cut(s) 35, 805
Bsu36I CCTNAGG 1 cut(s) 717
BsuI GTATCC 1 cut(s) 620
BsuRI GGCC 3 cut(s) 60, 306, 321
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 361, 867
Cac8I GCNNGC 3 cut(s) 319, 342, 507
CfoI GCGC 4 cut(s) 268, 317, 337, 505
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 5 cut(s) 304, 320, 369, 391, 633
CseI GACGC 2 cut(s) 111, 780
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 1 cut(s) 407
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 3 cut(s) 413, 579, 717
DinI GGCGCC 1 cut(s) 316
DpnI GATC 3 cut(s) 37, 194, 807
DpnII GATC 3 cut(s) 35, 192, 805
DraI TTTAAA 1 cut(s) 702
Eam1104I CTCTTC 2 cut(s) 154, 819
EarI CTCTTC 2 cut(s) 154, 819
Eco130I CCWWGG 1 cut(s) 733
Eco24I GRGCYC 1 cut(s) 673
Eco47I GGWCC 3 cut(s) 369, 391, 633
Eco47III AGCGCT 1 cut(s) 504
Eco81I CCTNAGG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 578
EcoO109I RGGNCCY 2 cut(s) 391, 633
EcoRI GAATTC 2 cut(s) 442, 566
EcoRII CCWGG 2 cut(s) 25, 558
EcoT14I CCWWGG 1 cut(s) 733
EcoT22I ATGCAT 1 cut(s) 745
EcoT38I GRGCYC 1 cut(s) 673
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 733
FaqI GGGAC 3 cut(s) 34, 382, 619
FauI CCCGC 1 cut(s) 359
FblI GTMKAC 1 cut(s) 223
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 673
FspBI CTAG 1 cut(s) 404
GlaI GCGC 4 cut(s) 267, 316, 336, 504
HaeII RGCGCY 2 cut(s) 318, 506
HaeIII GGCC 3 cut(s) 60, 306, 321
HapII CCGG 5 cut(s) 33, 211, 294, 318, 666
HgaI GACGC 2 cut(s) 111, 780
HhaI GCGC 4 cut(s) 268, 317, 337, 505
Hin1I GRCGYC 3 cut(s) 103, 315, 791
Hin6I GCGC 4 cut(s) 266, 315, 335, 503
HinP1I GCGC 4 cut(s) 266, 315, 335, 503
HindIII AAGCTT 1 cut(s) 690
HpaII CCGG 5 cut(s) 33, 211, 294, 318, 666
HphI GGTGA 4 cut(s) 112, 247, 749, 856
Hpy166II GTNNAC 2 cut(s) 204, 224
Hpy188I TCNGA 4 cut(s) 448, 528, 756, 843
Hpy188III TCNNGA 4 cut(s) 33, 181, 674, 716
Hpy8I GTNNAC 2 cut(s) 204, 224
Hpy99I CGWCG 5 cut(s) 105, 281, 335, 426, 822
HpyAV CCTTC 1 cut(s) 819
HpyCH4III ACNGT 2 cut(s) 140, 452
HpyCH4IV ACGT 2 cut(s) 276, 820
HpyCH4V TGCA 6 cut(s) 204, 485, 641, 686, 743, 848
HpyF10VI GCNNNNNNNGC 9 cut(s) 303, 306, 312, 318, 341, 647, 689, 749, 845
HpyF3I CTNAG 3 cut(s) 413, 579, 717
HpySE526I ACGT 2 cut(s) 276, 820
Hsp92I GRCGYC 3 cut(s) 103, 315, 791
HspAI GCGC 4 cut(s) 266, 315, 335, 503
KasI GGCGCC 1 cut(s) 314
Kpn2I TCCGGA 1 cut(s) 32
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Kzo9I GATC 3 cut(s) 35, 192, 805
Lsp1109I GCAGC 4 cut(s) 284, 296, 324, 670
LweI GCATC 2 cut(s) 670, 730
MabI ACCWGGT 1 cut(s) 25
MaeI CTAG 1 cut(s) 404
MaeII ACGT 2 cut(s) 276, 820
MaeIII GTNAC 1 cut(s) 15
MalI GATC 3 cut(s) 37, 194, 807
MbiI CCGCTC 1 cut(s) 260
MboI GATC 3 cut(s) 35, 192, 805
MboII GAAGA 5 cut(s) 141, 144, 562, 689, 806
MfeI CAATTG 2 cut(s) 480, 600
MflI RGATCY 2 cut(s) 35, 805
MhlI GDGCHC 2 cut(s) 206, 673
MluCI AATT 9 cut(s) 124, 442, 480, 550, 566, 590, 600, 658, 761
Mly113I GGCGCC 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 297
Mph1103I ATGCAT 1 cut(s) 745
MroI TCCGGA 1 cut(s) 32
MroNI GCCGGC 1 cut(s) 317
MseI TTAA 4 cut(s) 186, 593, 701, 883
MspA1I CMGCKG 2 cut(s) 161, 309
MspI CCGG 5 cut(s) 33, 211, 294, 318, 666
MspR9I CCNGG 3 cut(s) 27, 560, 667
MunI CAATTG 2 cut(s) 480, 600
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 2 cut(s) 27, 560
MvnI CGCG 2 cut(s) 266, 335
MwoI GCNNNNNNNGC 9 cut(s) 303, 306, 312, 318, 341, 647, 689, 749, 845
NaeI GCCGGC 1 cut(s) 319
NarI GGCGCC 1 cut(s) 315
NciI CCSGG 1 cut(s) 667
NdeII GATC 3 cut(s) 35, 192, 805
NgoMIV GCCGGC 1 cut(s) 317
NlaIV GGNNCC 7 cut(s) 31, 37, 232, 316, 322, 370, 635
NsiI ATGCAT 1 cut(s) 745
NspV TTCGAA 1 cut(s) 440
PaeR7I CTCGAG 1 cut(s) 378
PctI GAATGC 1 cut(s) 743
PdiI GCCGGC 1 cut(s) 319
PflMI CCANNNNNTGG 1 cut(s) 605
PluTI GGCGCC 1 cut(s) 318
PpuMI RGGWCCY 2 cut(s) 391, 633
Psp5II RGGWCCY 2 cut(s) 391, 633
Psp6I CCWGG 2 cut(s) 25, 558
PspGI CCWGG 2 cut(s) 25, 558
PspN4I GGNNCC 7 cut(s) 31, 37, 232, 316, 322, 370, 635
PspPI GGNCC 5 cut(s) 304, 320, 369, 391, 633
PspPPI RGGWCCY 2 cut(s) 391, 633
PspXI VCTCGAGB 1 cut(s) 378
PsrI GAACNNNNNNTAC 2 cut(s) 214, 246
PsuI RGATCY 2 cut(s) 35, 805
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SaqAI TTAA 4 cut(s) 186, 593, 701, 883
Sau3AI GATC 3 cut(s) 35, 192, 805
Sau96I GGNCC 5 cut(s) 304, 320, 369, 391, 633
ScaI AGTACT 1 cut(s) 408
ScrFI CCNGG 3 cut(s) 27, 560, 667
SduI GDGCHC 2 cut(s) 206, 673
SexAI ACCWGGT 1 cut(s) 25
SfaNI GCATC 2 cut(s) 670, 730
SfcI CTRYAG 1 cut(s) 585
SfoI GGCGCC 1 cut(s) 316
Sfr274I CTCGAG 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 440
SinI GGWCC 3 cut(s) 369, 391, 633
SlaI CTCGAG 1 cut(s) 378
SmlI CTYRAG 2 cut(s) 378, 854
SmoI CTYRAG 2 cut(s) 378, 854
SpeI ACTAGT 1 cut(s) 403
Sse9I AATT 9 cut(s) 124, 442, 480, 550, 566, 590, 600, 658, 761
SspDI GGCGCC 1 cut(s) 314
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 3 cut(s) 25, 558, 665
StyI CCWWGG 1 cut(s) 733
TaaI ACNGT 2 cut(s) 140, 452
TaiI ACGT 2 cut(s) 279, 823
TaqI TCGA 3 cut(s) 379, 440, 817
TasI AATT 9 cut(s) 124, 442, 480, 550, 566, 590, 600, 658, 761
TatI WGTACW 1 cut(s) 406
TauI GCSGC 7 cut(s) 60, 80, 83, 309, 315, 347, 420
Tru1I TTAA 4 cut(s) 186, 593, 701, 883
Tru9I TTAA 4 cut(s) 186, 593, 701, 883
TscAI CASTG 2 cut(s) 368, 874
TseI GCWGC 4 cut(s) 297, 309, 337, 683
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 2 cut(s) 368, 874
Van91I CCANNNNNTGG 1 cut(s) 605
VneI GTGCAC 1 cut(s) 202
VpaK11BI GGWCC 3 cut(s) 369, 391, 633
XagI CCTNNNNNAGG 1 cut(s) 578
XapI RAATTY 2 cut(s) 442, 566
XhoI CTCGAG 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 1 cut(s) 404
ZrmI AGTACT 1 cut(s) 408
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.