AT3G17730
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017536
Physical Location & Seq
Forward (+)
6064272 .. 6066180
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17730.1

Sequence Viewer

Length: 741 bp
ATGGCTCCAGTCGGATTACCTCCAGGCTTTAGATTTCATCCGACTGACGAAGAACTCGTAAACTATTATCTGAAAAGAAAGATCAACGGTCAAGAAATCGAGCTTGATATAATTCCCGAGGTTGATCTCTACAAATGCGAGCCATGGGACCTCGCAGAGAAGTCGTTTCTACCAAGTAGAGATCCGGAGTGGTATTTTTTTGGGCCACGTGACCGGAAGTATCCGAACGGGTTTAGGACGAACCGAGCAACGAGAGGTGGGTACTGGAAATCGACCGGCAAAGATCGGAGAGTGACAAGTCAAAGCAGAGCGATTGGGATGAAAAAGACTTTGGTTTATTATAAAGGAAGAGCTCCTCAAGGGATCCGTACGGATTGGGTTATGCATGAGTATCGTCTCGATGATAAGGATTGTGACGATCCCTCTTCGCTCCAGGACTCGTATGCATTGTGTCGGGTATTCAAAAAGAACGGAATATGTTCGGAGTTGGAATCAGAACGGCAATTGCAAACGGGACAATGTAGCTTCACAACGGCGTCAATGGAGGAGATCAATTCGAATAACAACAACAATTATAATAATGATTATGAGACAATGTCGCCGGAGGTGGGAGTTTCCTCCGCCTGCGTTGAAGAAGTAGTCGATGATAAAGACGATTCGTGGATGCAGTTTATAACAGATGACGCATGGGACACGTCATCAAATGGTGCAGCTATGGGACATGGTCAAGGGGTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

246

Amino Acids

28.25

Weight (kDa)

4.92

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 133 3.1e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17730
fragaria_vesca FvH4_5g18130
malus_domestica MD14G1243700.v1.1
prunus_persica Prupe.5G241300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0177481
rosa_laevigata RLG00000005534
rosa_multiflora Rmu_sc0028619.1_g000003
rosa_roxburghii Rroxscaffold_3G00275840
rosa_rugosa Rorug06G0406400
rosa_samantha Rh7AG005900 Rh7BG005800
rosa_wichuraiana Rw7G000480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 342, 576, 674
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 1 cut(s) 621
AclWI GGATC 4 cut(s) 176, 358, 371, 413
AcvI CACGTG 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 2 cut(s) 263, 370
AfiI CCNNNNNNNGG 1 cut(s) 608
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 2 cut(s) 463, 632
AjiI CACGTC 1 cut(s) 696
AjnI CCWGG 2 cut(s) 22, 432
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 4 cut(s) 103, 353, 525, 713
AluI AGCT 4 cut(s) 103, 353, 525, 713
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 2 cut(s) 401, 584
AlwI GGATC 4 cut(s) 176, 358, 371, 413
Ama87I CYCGRG 1 cut(s) 116
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 710
Asp700I GAANNNNTTC 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 148, 203
AsuII TTCGAA 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 148
BamHI GGATCC 1 cut(s) 363
BanII GRGCYC 1 cut(s) 355
BbrPI CACGTG 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 722
BceAI ACGGC 2 cut(s) 515, 549
BcgI CGANNNNNNTGC 4 cut(s) 144, 178, 374, 408
BciT130I CCWGG 2 cut(s) 24, 434
BciVI GTATCC 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 401, 584
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 1 cut(s) 711
BlsI GCNGC 1 cut(s) 712
Bme1390I CCNGG 2 cut(s) 24, 434
Bme18I GGWCC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 696
BmgT120I GGNCC 2 cut(s) 148, 203
BmiI GGNNCC 3 cut(s) 6, 149, 365
BmrFI CCNGG 2 cut(s) 24, 434
BmsI GCATC 1 cut(s) 654
BpmI CTGGAG 2 cut(s) 6, 416
Bpu14I TTCGAA 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 117, 143
BsaWI WCCGGW 2 cut(s) 184, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 608
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 8, 269
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 2 cut(s) 24, 434
BseDI CCNNGG 2 cut(s) 117, 143
BseGI GGATG 3 cut(s) 37, 324, 669
BseLI CCNNNNNNNGG 1 cut(s) 608
BseNI ACTGG 2 cut(s) 8, 269
BseRI GAGGAG 2 cut(s) 345, 560
BseXI GCAGC 1 cut(s) 722
BsgI GTGCAG 1 cut(s) 729
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 4 cut(s) 185, 214, 276, 602
BsiWI CGTACG 1 cut(s) 368
BslFI GGGAC 4 cut(s) 161, 528, 704, 732
BslI CCNNNNNNNGG 1 cut(s) 608
BsmAI GTCTC 2 cut(s) 401, 584
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 4 cut(s) 161, 528, 704, 732
BsnI GGCC 1 cut(s) 205
BsoBI CYCGRG 1 cut(s) 116
Bsp119I TTCGAA 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 355
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 7 cut(s) 81, 124, 181, 283, 363, 418, 549
Bsp19I CCATGG 1 cut(s) 143
BspACI CCGC 1 cut(s) 621
BspANI GGCC 1 cut(s) 205
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 6, 149, 365
BspPI GGATC 4 cut(s) 176, 358, 371, 413
BspQI GCTCTTC 1 cut(s) 343
BspT104I TTCGAA 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 2 cut(s) 8, 269
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 117, 143
BssMI GATC 7 cut(s) 81, 124, 181, 283, 363, 418, 549
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 2 cut(s) 24, 434
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 343, 430
BstACI GRCGYC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 557
BstC8I GCNNGC 2 cut(s) 140, 625
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 3 cut(s) 37, 324, 669
BstKTI GATC 7 cut(s) 84, 127, 184, 286, 366, 421, 552
BstMAI GTCTC 2 cut(s) 401, 584
BstMBI GATC 7 cut(s) 81, 124, 181, 283, 363, 418, 549
BstMCI CGRYCG 1 cut(s) 276
BstNI CCWGG 2 cut(s) 24, 434
BstSCI CCNGG 2 cut(s) 22, 432
BstV1I GCAGC 1 cut(s) 722
BstX2I RGATCY 2 cut(s) 181, 363
BstYI RGATCY 2 cut(s) 181, 363
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 143
BtrI CACGTC 1 cut(s) 696
BtsCI GGATG 3 cut(s) 37, 324, 669
Cac8I GCNNGC 2 cut(s) 140, 625
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 148, 203
CseI GACGC 2 cut(s) 525, 692
Csp6I GTAC 2 cut(s) 262, 369
CviAII CATG 4 cut(s) 144, 386, 687, 722
CviJI RGCY 8 cut(s) 5, 27, 103, 142, 205, 353, 525, 713
CviKI_1 RGCY 8 cut(s) 5, 27, 103, 142, 205, 353, 525, 713
CviQI GTAC 2 cut(s) 262, 369
DpnI GATC 7 cut(s) 83, 126, 183, 285, 365, 420, 551
DpnII GATC 7 cut(s) 81, 124, 181, 283, 363, 418, 549
Eam1104I CTCTTC 2 cut(s) 343, 430
EarI CTCTTC 2 cut(s) 343, 430
EciI GGCGGA 1 cut(s) 610
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 353
Eco72I CACGTG 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 22, 432
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 2 cut(s) 387, 448
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 4 cut(s) 147, 389, 690, 725
FaqI GGGAC 4 cut(s) 161, 528, 704, 732
FatI CATG 4 cut(s) 143, 385, 686, 721
Fnu4HI GCNGC 1 cut(s) 711
FokI GGATG 3 cut(s) 24, 331, 676
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 711
GluI GCNGC 1 cut(s) 711
GsuI CTGGAG 2 cut(s) 6, 416
HaeIII GGCC 1 cut(s) 205
HapII CCGG 4 cut(s) 185, 214, 276, 602
HgaI GACGC 2 cut(s) 525, 692
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 4 cut(s) 147, 389, 690, 725
HinfI GANTC 3 cut(s) 437, 491, 656
HpaII CCGG 4 cut(s) 185, 214, 276, 602
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 7 cut(s) 14, 42, 72, 225, 288, 484, 496
Hpy188III TCNNGA 4 cut(s) 92, 116, 185, 398
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 2 cut(s) 208, 695
HpyCH4V TGCA 5 cut(s) 385, 446, 508, 667, 710
HpySE526I ACGT 2 cut(s) 208, 695
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 4 cut(s) 147, 389, 690, 725
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 7 cut(s) 81, 124, 181, 283, 363, 418, 549
LguI GCTCTTC 1 cut(s) 343
LmnI GCTCC 3 cut(s) 10, 358, 435
Lsp1109I GCAGC 1 cut(s) 722
LweI GCATC 1 cut(s) 654
MaeII ACGT 2 cut(s) 208, 695
MaeIII GTNAC 3 cut(s) 209, 292, 413
MalI GATC 7 cut(s) 83, 126, 183, 285, 365, 420, 551
MboI GATC 7 cut(s) 81, 124, 181, 283, 363, 418, 549
MboII GAAGA 4 cut(s) 62, 360, 417, 644
MfeI CAATTG 1 cut(s) 503
MflI RGATCY 2 cut(s) 181, 363
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 4 cut(s) 111, 503, 553, 571
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 65, 468
MnlI CCTC 9 cut(s) 30, 112, 161, 248, 366, 433, 538, 598, 628
Mph1103I ATGCAT 2 cut(s) 387, 448
MroI TCCGGA 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 478
MspI CCGG 4 cut(s) 185, 214, 276, 602
MspR9I CCNGG 2 cut(s) 24, 434
MunI CAATTG 1 cut(s) 503
MvaI CCWGG 2 cut(s) 24, 434
NcoI CCATGG 1 cut(s) 143
NdeII GATC 7 cut(s) 81, 124, 181, 283, 363, 418, 549
NlaIII CATG 4 cut(s) 147, 389, 690, 725
NlaIV GGNNCC 3 cut(s) 6, 149, 365
NmuCI GTSAC 3 cut(s) 209, 292, 413
NsiI ATGCAT 2 cut(s) 387, 448
NspV TTCGAA 1 cut(s) 557
PciSI GCTCTTC 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 491, 656
Pfl23II CGTACG 1 cut(s) 368
PflFI GACNNNGTC 2 cut(s) 595, 723
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 1 cut(s) 712
PleI GAGTC 1 cut(s) 431
PmaCI CACGTG 1 cut(s) 209
PmlI CACGTG 1 cut(s) 209
PpsI GAGTC 1 cut(s) 431
Ppu21I YACGTR 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 148
PsiI TTATAA 3 cut(s) 342, 576, 674
Psp124BI GAGCTC 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 22, 432
PspCI CACGTG 1 cut(s) 209
PspGI CCWGG 2 cut(s) 22, 432
PspLI CGTACG 1 cut(s) 368
PspN4I GGNNCC 3 cut(s) 6, 149, 365
PspPI GGNCC 2 cut(s) 148, 203
PspPPI RGGWCCY 1 cut(s) 148
PsuI RGATCY 2 cut(s) 181, 363
PsyI GACNNNGTC 2 cut(s) 595, 723
RsaI GTAC 2 cut(s) 263, 370
RsaNI GTAC 2 cut(s) 262, 369
SacI GAGCTC 1 cut(s) 355
SapI GCTCTTC 1 cut(s) 343
SatI GCNGC 1 cut(s) 711
Sau3AI GATC 7 cut(s) 81, 124, 181, 283, 363, 418, 549
Sau96I GGNCC 2 cut(s) 148, 203
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 2 cut(s) 24, 434
SduI GDGCHC 1 cut(s) 355
SfaNI GCATC 1 cut(s) 654
SfuI TTCGAA 1 cut(s) 557
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 4 cut(s) 111, 503, 553, 571
SsiI CCGC 1 cut(s) 621
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 2 cut(s) 22, 432
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 2 cut(s) 211, 698
TaqI TCGA 5 cut(s) 99, 272, 399, 557, 642
TasI AATT 4 cut(s) 111, 503, 553, 571
TfiI GAWTC 2 cut(s) 491, 656
TseFI GTSAC 3 cut(s) 209, 292, 413
TseI GCWGC 1 cut(s) 710
Tsp45I GTSAC 3 cut(s) 209, 292, 413
TspDTI ATGAA 2 cut(s) 26, 335
TspGWI ACGGA 3 cut(s) 356, 386, 486
Tth111I GACNNNGTC 2 cut(s) 595, 723
VpaK11BI GGWCC 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 478
Zsp2I ATGCAT 2 cut(s) 387, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.