Rmu_sc0028619.1_g000003
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028619.1
OG0017536
Physical Location & Seq
Reverse (-)
7023 .. 9054
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028619.1_g000003.1.cds

Sequence Viewer

Length: 807 bp
atggctccggtgggattacctcccggatttaggttccatccgacggatgaagagcttgtgaattactatctgaagaggaagataatcgggcaagagattgagcttgatatcattccggaagttgatctctacaaatgtgagccttgggaattagcagaaaagtcatttttgccaagtagagacccggagtggtacttctttggaccccgggatcggaaatacccaaatggattcagaactaacagagcaacaagagctggatactggaagtcgactggcaaagacaggagagtcttatcccagaatcgagccatcggaatgaagaagacgctggtttactacagaggccgagcccctcagggcattcggaccgattgggtcatgcatgaatatcgcctagatgacaaggctgactgcctcgacgacacctctgctggcatccaggattcttttgcattgtgtcgcgtgttcaagaaaaatggaatatgcgcggagattgaagagcaaggagggcaaagtagcagtagtgatgtatcgctattaattcatgaaagatcatcacaattattagcagcaggaggtctacaccataacgatcactgtagtattgaaaccatgtcaccggaaaatattccgagggcgtcgtcatcgtcatgtctgcaggacttggaggaagaagataaggacgactcgtggatgcagtttatcacagatgatccatggtcttcgtctaacaccccaattaatggtactactactgaagtcgacctctctcagtctcatgcgggtgtggccttcacaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

268

Amino Acids

30.41

Weight (kDa)

5.15

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17730
fragaria_vesca FvH4_5g18130
malus_domestica MD14G1243700.v1.1
prunus_persica Prupe.5G241300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0177481
rosa_laevigata RLG00000005534
rosa_multiflora Rmu_sc0028619.1_g000003
rosa_roxburghii Rroxscaffold_3G00275840
rosa_rugosa Rorug06G0406400
rosa_samantha Rh7AG005900 Rh7BG005800
rosa_wichuraiana Rw7G000480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 290
AccB7I CCANNNNNTGG 1 cut(s) 746
AccI GTMKAC 3 cut(s) 272, 583, 765
AccII CGCG 2 cut(s) 465, 491
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 2 cut(s) 491, 785
AclWI GGATC 2 cut(s) 219, 710
AcuI CTGAAG 2 cut(s) 92, 780
AcyI GRCGYC 1 cut(s) 641
AfaI GTAC 2 cut(s) 194, 751
AfiI CCNNNNNNNGG 4 cut(s) 30, 43, 213, 746
AgsI TTSAA 3 cut(s) 472, 500, 611
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 3 cut(s) 55, 103, 257
AluI AGCT 3 cut(s) 55, 103, 257
Alw26I GTCTC 2 cut(s) 174, 783
AlwI GGATC 2 cut(s) 219, 710
Ama87I CYCGRG 1 cut(s) 207
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 2 cut(s) 346, 792
ApeKI GCWGC 1 cut(s) 572
AseI ATTAAT 2 cut(s) 542, 744
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 203, 369
AsuC2I CCSGG 4 cut(s) 24, 185, 208, 209
AsuHPI GGTGA 1 cut(s) 612
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 2 cut(s) 203, 369
AxyI CCTNAGG 1 cut(s) 357
BanII GRGCYC 1 cut(s) 355
BauI CACGAG 1 cut(s) 691
BbsI GAAGAC 2 cut(s) 332, 717
BbvI GCAGC 1 cut(s) 584
BccI CCATC 2 cut(s) 45, 320
BcgI CGANNNNNNTGC 4 cut(s) 374, 408, 413, 447
BciT130I CCWGG 1 cut(s) 443
BciVI GTATCC 1 cut(s) 254
BcnI CCSGG 4 cut(s) 24, 185, 208, 209
BcoDI GTCTC 2 cut(s) 174, 783
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 3 cut(s) 340, 601, 659
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme1390I CCNGG 5 cut(s) 24, 185, 208, 209, 443
Bme18I GGWCC 2 cut(s) 203, 369
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 203, 369
BmiI GGNNCC 3 cut(s) 6, 35, 205
BmrFI CCNGG 5 cut(s) 24, 185, 208, 209, 443
BmsI GCATC 2 cut(s) 447, 687
BpiI GAAGAC 2 cut(s) 332, 717
BpuMI CCSGG 4 cut(s) 24, 185, 208, 209
BsaHI GRCGYC 1 cut(s) 641
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 5 cut(s) 143, 206, 207, 635, 719
BsaWI WCCGGW 3 cut(s) 7, 115, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 43, 213, 746
Bse1I ACTGG 2 cut(s) 269, 280
Bse21I CCTNAGG 1 cut(s) 357
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 5 cut(s) 143, 206, 207, 635, 719
BseGI GGATG 4 cut(s) 37, 52, 438, 702
BseLI CCNNNNNNNGG 4 cut(s) 30, 43, 213, 746
BseMII CTCAG 2 cut(s) 371, 788
BseNI ACTGG 2 cut(s) 269, 280
BseXI GCAGC 1 cut(s) 584
Bsh1236I CGCG 2 cut(s) 465, 491
BshFI GGCC 2 cut(s) 348, 794
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 6 cut(s) 8, 24, 116, 185, 208, 623
BslI CCNNNNNNNGG 4 cut(s) 30, 43, 213, 746
BsmAI GTCTC 2 cut(s) 174, 783
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 2 cut(s) 348, 794
Bso31I GGTCTC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 355
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 5 cut(s) 124, 211, 554, 595, 715
Bsp19I CCATGG 1 cut(s) 719
BspACI CCGC 2 cut(s) 491, 785
BspANI GGCC 2 cut(s) 348, 794
BspCNI CTCAG 2 cut(s) 370, 787
BspEI TCCGGA 1 cut(s) 115
BspFNI CGCG 2 cut(s) 465, 491
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 6, 35, 205
BspMAI CTGCAG 1 cut(s) 663
BspPI GGATC 2 cut(s) 219, 710
BspQI GCTCTTC 2 cut(s) 45, 495
BspTNI GGTCTC 1 cut(s) 174
BsrI ACTGG 2 cut(s) 269, 280
BssECI CCNNGG 5 cut(s) 143, 206, 207, 635, 719
BssMI GATC 5 cut(s) 124, 211, 554, 595, 715
BssNI GRCGYC 1 cut(s) 641
BssSI CACGAG 1 cut(s) 691
BssT1I CCWWGG 2 cut(s) 143, 719
Bst2BI CACGAG 1 cut(s) 691
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 602
Bst6I CTCTTC 3 cut(s) 45, 68, 495
BstACI GRCGYC 1 cut(s) 641
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 357, 774
BstDSI CCRYGG 1 cut(s) 719
BstF5I GGATG 4 cut(s) 37, 52, 438, 702
BstFNI CGCG 2 cut(s) 465, 491
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 5 cut(s) 127, 214, 557, 598, 718
BstMAI GTCTC 2 cut(s) 174, 783
BstMBI GATC 5 cut(s) 124, 211, 554, 595, 715
BstMWI GCNNNNNNNGC 3 cut(s) 254, 511, 791
BstNI CCWGG 1 cut(s) 443
BstSCI CCNGG 5 cut(s) 22, 183, 206, 207, 441
BstSFI CTRYAG 3 cut(s) 340, 601, 659
BstUI CGCG 2 cut(s) 465, 491
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 2 cut(s) 332, 717
Bsu36I CCTNAGG 1 cut(s) 357
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 2 cut(s) 348, 794
BtgI CCRYGG 1 cut(s) 719
BtsCI GGATG 4 cut(s) 37, 52, 438, 702
BtsIMutI CAGTG 1 cut(s) 598
Cac8I GCNNGC 1 cut(s) 436
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 2 cut(s) 203, 369
Cfr9I CCCGGG 1 cut(s) 207
CpoI CGGWCCG 1 cut(s) 369
CseI GACGC 2 cut(s) 337, 630
Csp6I GTAC 2 cut(s) 193, 750
CspI CGGWCCG 1 cut(s) 369
CviAII CATG 7 cut(s) 382, 386, 548, 616, 654, 720, 782
CviQI GTAC 2 cut(s) 193, 750
DdeI CTNAG 2 cut(s) 357, 774
DpnI GATC 5 cut(s) 126, 213, 556, 597, 717
DpnII GATC 5 cut(s) 124, 211, 554, 595, 715
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
Eam1104I CTCTTC 3 cut(s) 45, 68, 495
EarI CTCTTC 3 cut(s) 45, 68, 495
Eco130I CCWWGG 2 cut(s) 143, 719
Eco24I GRGCYC 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 203, 369
Eco57I CTGAAG 2 cut(s) 92, 780
Eco81I CCTNAGG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 441
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 143, 719
EcoT22I ATGCAT 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 2 cut(s) 143, 719
FaeI CATG 7 cut(s) 385, 389, 551, 619, 657, 723, 785
FaiI YATR 9 cut(s) 383, 387, 487, 549, 591, 617, 655, 721, 783
FatI CATG 7 cut(s) 381, 385, 547, 615, 653, 719, 781
FauI CCCGC 1 cut(s) 778
FblI GTMKAC 3 cut(s) 272, 583, 765
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 4 cut(s) 24, 59, 425, 709
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 1 cut(s) 398
GlaI GCGC 1 cut(s) 490
GluI GCNGC 1 cut(s) 573
HaeIII GGCC 2 cut(s) 348, 794
HapII CCGG 6 cut(s) 8, 24, 116, 185, 208, 623
HgaI GACGC 2 cut(s) 337, 630
HhaI GCGC 1 cut(s) 491
Hin1I GRCGYC 1 cut(s) 641
Hin1II CATG 7 cut(s) 385, 389, 551, 619, 657, 723, 785
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HincII GTYRAC 2 cut(s) 273, 766
HindII GTYRAC 2 cut(s) 273, 766
HinfI GANTC 5 cut(s) 231, 291, 304, 446, 689
HpaII CCGG 6 cut(s) 8, 24, 116, 185, 208, 623
HphI GGTGA 1 cut(s) 612
Hpy166II GTNNAC 4 cut(s) 273, 337, 584, 766
Hpy188I TCNGA 7 cut(s) 42, 72, 216, 236, 317, 369, 636
Hpy188III TCNNGA 3 cut(s) 116, 472, 548
Hpy8I GTNNAC 4 cut(s) 273, 337, 584, 766
Hpy99I CGWCG 3 cut(s) 46, 425, 646
HpyAV CCTTC 1 cut(s) 805
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4V TGCA 4 cut(s) 385, 455, 661, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 511, 791
HpyF3I CTNAG 2 cut(s) 357, 774
Hsp92I GRCGYC 1 cut(s) 641
Hsp92II CATG 7 cut(s) 385, 389, 551, 619, 657, 723, 785
HspAI GCGC 1 cut(s) 489
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 5 cut(s) 124, 211, 554, 595, 715
LguI GCTCTTC 2 cut(s) 45, 495
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 2 cut(s) 447, 687
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 618
MalI GATC 5 cut(s) 126, 213, 556, 597, 717
MboI GATC 5 cut(s) 124, 211, 554, 595, 715
MboII GAAGA 9 cut(s) 62, 85, 91, 334, 337, 512, 686, 689, 717
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 5 cut(s) 61, 149, 543, 563, 741
MlyI GAGTC 2 cut(s) 300, 683
MmeI TCCRAC 1 cut(s) 65
Mph1103I ATGCAT 1 cut(s) 387
MroI TCCGGA 1 cut(s) 115
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 2 cut(s) 542, 744
MslI CAYNNNNRTG 3 cut(s) 317, 652, 786
MspI CCGG 6 cut(s) 8, 24, 116, 185, 208, 623
MspR9I CCNGG 5 cut(s) 24, 185, 208, 209, 443
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 2 cut(s) 465, 491
MwoI GCNNNNNNNGC 3 cut(s) 254, 511, 791
NciI CCSGG 4 cut(s) 24, 185, 208, 209
NcoI CCATGG 1 cut(s) 719
NdeII GATC 5 cut(s) 124, 211, 554, 595, 715
NlaIII CATG 7 cut(s) 385, 389, 551, 619, 657, 723, 785
NlaIV GGNNCC 3 cut(s) 6, 35, 205
NmeAIII GCCGAG 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 618
NsiI ATGCAT 1 cut(s) 387
PagI TCATGA 1 cut(s) 547
PciSI GCTCTTC 2 cut(s) 45, 495
PctI GAATGC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 3 cut(s) 231, 304, 446
PflMI CCANNNNNTGG 1 cut(s) 746
PfoI TCCNGGA 2 cut(s) 22, 441
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 2 cut(s) 299, 683
PpsI GAGTC 2 cut(s) 299, 683
PshBI ATTAAT 2 cut(s) 542, 744
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 3 cut(s) 6, 35, 205
PspPI GGNCC 2 cut(s) 203, 369
PstI CTGCAG 1 cut(s) 663
RsaI GTAC 2 cut(s) 194, 751
RsaNI GTAC 2 cut(s) 193, 750
RseI CAYNNNNRTG 3 cut(s) 317, 652, 786
Rsr2I CGGWCCG 1 cut(s) 369
RsrII CGGWCCG 1 cut(s) 369
SalI GTCGAC 2 cut(s) 271, 764
SapI GCTCTTC 2 cut(s) 45, 495
SaqAI TTAA 2 cut(s) 542, 744
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 5 cut(s) 124, 211, 554, 595, 715
Sau96I GGNCC 2 cut(s) 203, 369
SchI GAGTC 2 cut(s) 300, 683
ScrFI CCNGG 5 cut(s) 24, 185, 208, 209, 443
SduI GDGCHC 1 cut(s) 355
SetI ASST 9 cut(s) 22, 35, 57, 105, 259, 431, 583, 771, 806
SfaNI GCATC 2 cut(s) 447, 687
SfcI CTRYAG 3 cut(s) 340, 601, 659
SinI GGWCC 2 cut(s) 203, 369
SmaI CCCGGG 1 cut(s) 209
SmiMI CAYNNNNRTG 3 cut(s) 317, 652, 786
Sse9I AATT 5 cut(s) 61, 149, 543, 563, 741
SsiI CCGC 2 cut(s) 491, 785
SspI AATATT 1 cut(s) 631
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 5 cut(s) 22, 183, 206, 207, 441
StyI CCWWGG 2 cut(s) 143, 719
TaaI ACNGT 1 cut(s) 602
TaqI TCGA 4 cut(s) 272, 307, 420, 765
TaqII GACCGA 1 cut(s) 386
TasI AATT 5 cut(s) 61, 149, 543, 563, 741
TfiI GAWTC 3 cut(s) 231, 304, 446
Tru1I TTAA 2 cut(s) 542, 744
Tru9I TTAA 2 cut(s) 542, 744
TscAI CASTG 1 cut(s) 605
TseFI GTSAC 1 cut(s) 618
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 618
TspDTI ATGAA 5 cut(s) 63, 335, 402, 536, 564
TspGWI ACGGA 1 cut(s) 59
TspMI CCCGGG 1 cut(s) 207
TspRI CASTG 1 cut(s) 605
Van91I CCANNNNNTGG 1 cut(s) 746
VpaK11BI GGWCC 2 cut(s) 203, 369
VspI ATTAAT 2 cut(s) 542, 744
XmaI CCCGGG 1 cut(s) 207
XmiI GTMKAC 3 cut(s) 272, 583, 765
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.