FvH4_5g18130
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017536
Physical Location & Seq
Reverse (-)
10420606 .. 10423180
2575 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18130.t1

Sequence Viewer

Length: 813 bp
ATGGCTCCGGTGGGATTACCTCCCGGATTTAGGTTCCATCCGACGGACGAAGAGCTTGTGAATTACTATCTGAAGAGAAAGATAATTGGGCAAGAGATTGAGCTTGATATCATTCCTGAAGTTGATCTCTACAAATGTGAGCCTTGGGAATTAGCAGAGAAGTCATTTTTGCCGAGTAGAGACCCGGAGTGGTACTTTTTTGGACCCCGAGACCGGAAATACCCAAATGGATTCAGAACAAACAGAGCAACGAGAGCTGGATACTGGAAATCCACTGGTAAAGACAGGAGAGTGTCATCCCAGAATCGAGCCATCGGAATGAAGAAGACGCTGGTTTACTACAGAGGCCGAGCACCTCAGGGCATTCGAACCGATTGGGTCATGCATGAGTATCGCCTCGATGACAAGGCCGACTGCCTCGACGACACCTCCGCCGGCATTCAGGATTCTTTTGCATTGTGTCGCGTGTTCAAGAAAAATGGAATTTGTACTGAAATTGAAGAGCAAGGAGGGCAAAGTAGCAGCAGTGATGTATCGCTATTGATTCATGAAAGATCATCACAATTATTAGCAGCAGGAGGTCTACATTATAACGATCACTGTAGTACTGAAACATTGTCACCAGAAAATATTATTCCGAGGGCATCGTCGTCCTCATGTCTCCAGGACTTGGAGGAAGAAGAGAAGGACGACTCGTGGATGCAGTTCATCACAGATGATCCATGGTCTTCTTCTAACATTCCTCCAGTTAATGGTACTACTGGTGAAGTCGACCTCTCTCAGTCTCATGTGGGTGTGGCCTTCACAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

271

Amino Acids

30.61

Weight (kDa)

5.09

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 133 1.9e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17730
fragaria_vesca FvH4_5g18130
malus_domestica MD14G1243700.v1.1
prunus_persica Prupe.5G241300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0177481
rosa_laevigata RLG00000005534
rosa_multiflora Rmu_sc0028619.1_g000003
rosa_roxburghii Rroxscaffold_3G00275840
rosa_rugosa Rorug06G0406400
rosa_samantha Rh7AG005900 Rh7BG005800
rosa_wichuraiana Rw7G000480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AccB7I CCANNNNNTGG 2 cut(s) 670, 752
AccI GTMKAC 2 cut(s) 583, 771
AccII CGCG 1 cut(s) 465
AciI CCGC 1 cut(s) 432
AclWI GGATC 1 cut(s) 713
AcsI RAATTY 1 cut(s) 483
AcuI CTGAAG 2 cut(s) 92, 138
AfaI GTAC 4 cut(s) 194, 490, 607, 757
AfiI CCNNNNNNNGG 5 cut(s) 30, 43, 213, 670, 752
AgsI TTSAA 2 cut(s) 472, 500
AjnI CCWGG 1 cut(s) 663
AluBI AGCT 3 cut(s) 55, 103, 257
AluI AGCT 3 cut(s) 55, 103, 257
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 4 cut(s) 174, 204, 665, 789
AlwI GGATC 1 cut(s) 713
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 3 cut(s) 346, 408, 798
ApeKI GCWGC 2 cut(s) 522, 572
ApoI RAATTY 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 2 cut(s) 24, 185
AsuHPI GGTGA 2 cut(s) 612, 776
AsuII TTCGAA 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 203
AxyI CCTNAGG 1 cut(s) 357
BauI CACGAG 1 cut(s) 694
BbsI GAAGAC 2 cut(s) 332, 720
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 534, 584
BccI CCATC 2 cut(s) 45, 320
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 1 cut(s) 665
BciVI GTATCC 1 cut(s) 254
BcnI CCSGG 2 cut(s) 24, 185
BcoDI GTCTC 4 cut(s) 174, 204, 665, 789
BfmI CTRYAG 2 cut(s) 340, 601
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 2 cut(s) 523, 573
BlsI GCNGC 2 cut(s) 524, 574
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 3 cut(s) 24, 185, 665
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 3 cut(s) 6, 35, 205
BmrFI CCNGG 3 cut(s) 24, 185, 665
BmsI GCATC 2 cut(s) 653, 690
BpiI GAAGAC 2 cut(s) 332, 720
BpmI CTGGAG 2 cut(s) 647, 729
Bpu14I TTCGAA 1 cut(s) 367
BpuMI CCSGG 2 cut(s) 24, 185
BsaI GGTCTC 2 cut(s) 174, 204
BsaJI CCNNGG 3 cut(s) 143, 638, 722
BsaWI WCCGGW 2 cut(s) 7, 213
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 43, 213, 670, 752
Bse118I RCCGGY 1 cut(s) 434
Bse1I ACTGG 4 cut(s) 269, 280, 746, 766
Bse21I CCTNAGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 3 cut(s) 143, 638, 722
BseGI GGATG 3 cut(s) 37, 296, 705
BseLI CCNNNNNNNGG 5 cut(s) 30, 43, 213, 670, 752
BseMII CTCAG 2 cut(s) 371, 794
BseNI ACTGG 4 cut(s) 269, 280, 746, 766
BseXI GCAGC 2 cut(s) 534, 584
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 3 cut(s) 348, 410, 800
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 5 cut(s) 8, 24, 185, 214, 435
BslI CCNNNNNNNGG 5 cut(s) 30, 43, 213, 670, 752
BsmAI GTCTC 4 cut(s) 174, 204, 665, 789
BsmI GAATGC 2 cut(s) 363, 438
BsnI GGCC 3 cut(s) 348, 410, 800
Bso31I GGTCTC 2 cut(s) 174, 204
BsoBI CYCGRG 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 4 cut(s) 124, 554, 595, 718
Bsp19I CCATGG 1 cut(s) 722
BspACI CCGC 1 cut(s) 432
BspANI GGCC 3 cut(s) 348, 410, 800
BspCNI CTCAG 2 cut(s) 370, 793
BspFNI CGCG 1 cut(s) 465
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 6, 35, 205
BspPI GGATC 1 cut(s) 713
BspQI GCTCTTC 2 cut(s) 45, 495
BspT104I TTCGAA 1 cut(s) 367
BspTNI GGTCTC 2 cut(s) 174, 204
BsrFI RCCGGY 1 cut(s) 434
BsrI ACTGG 4 cut(s) 269, 280, 746, 766
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 3 cut(s) 143, 638, 722
BssMI GATC 4 cut(s) 124, 554, 595, 718
BssSI CACGAG 1 cut(s) 694
BssT1I CCWWGG 2 cut(s) 143, 722
Bst2BI CACGAG 1 cut(s) 694
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 1 cut(s) 602
Bst6I CTCTTC 4 cut(s) 45, 68, 495, 675
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 357, 780
BstDSI CCRYGG 1 cut(s) 722
BstF5I GGATG 3 cut(s) 37, 296, 705
BstFNI CGCG 1 cut(s) 465
BstKTI GATC 4 cut(s) 127, 557, 598, 721
BstMAI GTCTC 4 cut(s) 174, 204, 665, 789
BstMBI GATC 4 cut(s) 124, 554, 595, 718
BstMWI GCNNNNNNNGC 2 cut(s) 254, 511
BstNI CCWGG 1 cut(s) 665
BstSCI CCNGG 3 cut(s) 22, 183, 663
BstSFI CTRYAG 2 cut(s) 340, 601
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 534, 584
BstV2I GAAGAC 2 cut(s) 332, 720
Bsu36I CCTNAGG 1 cut(s) 357
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 3 cut(s) 348, 410, 800
BtgI CCRYGG 1 cut(s) 722
BtsCI GGATG 3 cut(s) 37, 296, 705
BtsI GCAGTG 1 cut(s) 532
BtsIMutI CAGTG 3 cut(s) 273, 532, 598
Cac8I GCNNGC 1 cut(s) 436
CciI TCATGA 1 cut(s) 547
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 1 cut(s) 337
Csp6I GTAC 4 cut(s) 193, 489, 606, 756
CviAII CATG 6 cut(s) 382, 386, 548, 657, 723, 788
CviJI RGCY 9 cut(s) 5, 55, 103, 142, 257, 311, 348, 410, 800
CviKI_1 RGCY 9 cut(s) 5, 55, 103, 142, 257, 311, 348, 410, 800
CviQI GTAC 4 cut(s) 193, 489, 606, 756
DdeI CTNAG 2 cut(s) 357, 780
DpnI GATC 4 cut(s) 126, 556, 597, 720
DpnII GATC 4 cut(s) 124, 554, 595, 718
Eam1104I CTCTTC 4 cut(s) 45, 68, 495, 675
EarI CTCTTC 4 cut(s) 45, 68, 495, 675
EciI GGCGGA 1 cut(s) 421
Eco130I CCWWGG 2 cut(s) 143, 722
Eco31I GGTCTC 2 cut(s) 174, 204
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 92, 138
Eco81I CCTNAGG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 663
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 143, 722
EcoT22I ATGCAT 1 cut(s) 387
ErhI CCWWGG 2 cut(s) 143, 722
FaeI CATG 6 cut(s) 385, 389, 551, 660, 726, 791
FaiI YATR 8 cut(s) 383, 387, 549, 591, 658, 724, 789, 811
FatI CATG 6 cut(s) 381, 385, 547, 656, 722, 787
FblI GTMKAC 2 cut(s) 583, 771
Fnu4HI GCNGC 2 cut(s) 523, 573
FokI GGATG 3 cut(s) 24, 283, 712
Fsp4HI GCNGC 2 cut(s) 523, 573
GluI GCNGC 2 cut(s) 523, 573
GsuI CTGGAG 2 cut(s) 647, 729
HaeIII GGCC 3 cut(s) 348, 410, 800
HapII CCGG 5 cut(s) 8, 24, 185, 214, 435
HgaI GACGC 1 cut(s) 337
Hin1II CATG 6 cut(s) 385, 389, 551, 660, 726, 791
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 5 cut(s) 231, 304, 446, 544, 692
HpaII CCGG 5 cut(s) 8, 24, 185, 214, 435
HphI GGTGA 2 cut(s) 612, 776
Hpy166II GTNNAC 3 cut(s) 337, 584, 772
Hpy188I TCNGA 5 cut(s) 42, 72, 236, 317, 639
Hpy188III TCNNGA 4 cut(s) 116, 443, 472, 548
Hpy8I GTNNAC 3 cut(s) 337, 584, 772
Hpy99I CGWCG 3 cut(s) 46, 425, 652
HpyAV CCTTC 2 cut(s) 679, 811
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4V TGCA 3 cut(s) 385, 455, 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 511
HpyF3I CTNAG 2 cut(s) 357, 780
Hsp92II CATG 6 cut(s) 385, 389, 551, 660, 726, 791
KroI GCCGGC 1 cut(s) 434
KroNI GCCGGC 1 cut(s) 436
Kzo9I GATC 4 cut(s) 124, 554, 595, 718
LguI GCTCTTC 2 cut(s) 45, 495
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 534, 584
LweI GCATC 2 cut(s) 653, 690
MaeIII GTNAC 1 cut(s) 618
MalI GATC 4 cut(s) 126, 556, 597, 720
MboI GATC 4 cut(s) 124, 554, 595, 718
MboII GAAGA 9 cut(s) 62, 85, 334, 337, 512, 689, 692, 720, 723
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 6 cut(s) 61, 84, 149, 483, 495, 563
MlyI GAGTC 1 cut(s) 686
MmeI TCCRAC 1 cut(s) 65
Mph1103I ATGCAT 1 cut(s) 387
MroNI GCCGGC 1 cut(s) 434
MseI TTAA 1 cut(s) 750
MslI CAYNNNNRTG 2 cut(s) 317, 792
MspI CCGG 5 cut(s) 8, 24, 185, 214, 435
MspR9I CCNGG 3 cut(s) 24, 185, 665
Mva1269I GAATGC 2 cut(s) 363, 438
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 2 cut(s) 254, 511
NaeI GCCGGC 1 cut(s) 436
NciI CCSGG 2 cut(s) 24, 185
NcoI CCATGG 1 cut(s) 722
NdeII GATC 4 cut(s) 124, 554, 595, 718
NgoMIV GCCGGC 1 cut(s) 434
NlaIII CATG 6 cut(s) 385, 389, 551, 660, 726, 791
NlaIV GGNNCC 3 cut(s) 6, 35, 205
NmeAIII GCCGAG 2 cut(s) 198, 374
NmuCI GTSAC 1 cut(s) 618
NsiI ATGCAT 1 cut(s) 387
NspV TTCGAA 1 cut(s) 367
PagI TCATGA 1 cut(s) 547
PciSI GCTCTTC 2 cut(s) 45, 495
PctI GAATGC 2 cut(s) 363, 438
PdiI GCCGGC 1 cut(s) 436
PfeI GAWTC 4 cut(s) 231, 304, 446, 544
PflMI CCANNNNNTGG 2 cut(s) 670, 752
PfoI TCCNGGA 2 cut(s) 22, 663
PkrI GCNGC 2 cut(s) 524, 574
PleI GAGTC 1 cut(s) 686
PpsI GAGTC 1 cut(s) 686
PsiI TTATAA 1 cut(s) 591
Psp6I CCWGG 1 cut(s) 663
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 3 cut(s) 6, 35, 205
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 4 cut(s) 194, 490, 607, 757
RsaNI GTAC 4 cut(s) 193, 489, 606, 756
RseI CAYNNNNRTG 2 cut(s) 317, 792
SalI GTCGAC 1 cut(s) 770
SapI GCTCTTC 2 cut(s) 45, 495
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 2 cut(s) 523, 573
Sau3AI GATC 4 cut(s) 124, 554, 595, 718
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 3 cut(s) 24, 185, 665
SduI GDGCHC 1 cut(s) 355
SetI ASST 9 cut(s) 22, 35, 57, 105, 259, 358, 431, 583, 777
SfaNI GCATC 2 cut(s) 653, 690
SfcI CTRYAG 2 cut(s) 340, 601
SfuI TTCGAA 1 cut(s) 367
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 317, 792
Sse9I AATT 6 cut(s) 61, 84, 149, 483, 495, 563
SsiI CCGC 1 cut(s) 432
SspI AATATT 1 cut(s) 631
StyD4I CCNGG 3 cut(s) 22, 183, 663
StyI CCWWGG 2 cut(s) 143, 722
TaaI ACNGT 1 cut(s) 602
TaqI TCGA 5 cut(s) 307, 367, 399, 420, 771
TasI AATT 6 cut(s) 61, 84, 149, 483, 495, 563
TatI WGTACW 2 cut(s) 488, 605
TfiI GAWTC 4 cut(s) 231, 304, 446, 544
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TscAI CASTG 3 cut(s) 280, 532, 605
TseFI GTSAC 1 cut(s) 618
TseI GCWGC 2 cut(s) 522, 572
Tsp45I GTSAC 1 cut(s) 618
TspDTI ATGAA 4 cut(s) 335, 536, 564, 697
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 3 cut(s) 280, 532, 605
Van91I CCANNNNNTGG 2 cut(s) 670, 752
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 483
XmiI GTMKAC 2 cut(s) 583, 771
ZrmI AGTACT 1 cut(s) 607
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.